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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0249900 |
| Transcript ID | LotjaGi3g1v0249900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Monoterpene synthase; TAIR: AT4G16730.1 terpene synthase 02; Swiss-Prot: sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic; TrEMBL-Plants: tr|A0A072V9D0|A0A072V9D0_MEDTR Monoterpene synthase; Found in the gene: LotjaGi3g1v0249900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:41628363..41631075) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAGCCAAGAAAACTATCTTAATATTTTGATTGTTATTCTAATGGCTCTCCTCCAAATTACTTCTCTCCCATTTAGCT TTGCTAAATTGCCTTTACCTCGCGAAACAAAGTCTTCATATCTAGAAAAGAGAAGCTTCAATCTCCATGGTGGAACTCAA CCCAAGGCATCATTTAAAGTTTATAATACTAATCAAACAATTACTCGTCGATCTGCAAATTTTGAACCTTCAACTTGGAG TTATGATTATATCCAATCATTGAGTACTGAATATAAGGTATGCTTTTATTTAAAAAAAAAAAGAGTATCAGGTTTTTTTT CTTTCATATTTCTCAATTTCAAAAATCGCCATGAAAATACAAATGCTTCCCTATGATGATCAGGCTAATGTCTTCTTGAT AAATTAATATAGGAAGAAGTTTACAAAAATCAAGTAAGTGTGCTAAAGGAAAAGGTGAGGATGATGTTTTGCAAAGTAGA AAATGAGCTTGATCAACTTGAATTTATTGATTTATTGCAAAGACTTGGAGTGGAGTATCATTACCCGAATGAAATTAGAA ATGTCTTGGACAATATCTATAAAACAGAAAACTCGAATAATGAAGAGAAGAATTTATATGCCACATCACTCAAGTTCAGA CTCTTAAGACAACATGGCTATGATATATCTTCAGGTTTGTACTACTTTCCAGTATTTCACTTAAGAAATTTATAAAAATG ATGGTGTATTTATGTGCGTAATATTTTTTTGATGTTACAGATATTTTTATTCGCTTTAAAGATGAAAATGGAAATCTCAA GAAAAGCGAGCACGCTGATGTGGAGGGATTGCTATCATTGTATGAAGCCTCATTTCATTCATTCGAGGATGAAAATATAT TGGATGAATTAAAAGATTTTGCCTCCAAATTTCTAAAAGATTATTTGAACGAGGGTAAAGGTGATTATACATCAGATCTA ATCAATCATGCTTTAGATTTTCCATTACATTGGAGAGTTCCTAAGTTCGAGGCTCGGTGGTTCATTAATGTGTACCAAAA AAAGGAAAACATGATTCCTGATTTACTTCAGTTCGCTAAATTGGATTTCAACATTTCTCAAGCAAACTATCGAGAAGAAC TCAAGGAATCATCCAGGTGACATGTCAATTATTTCATTCATACATTACAGTTGATTTTTGATTAAAATCCACCTCAGAGT CATAATTCTTGAATCATATAAAGTATTTCATGTTTCTTTTTCACAAGTTTATCATACCTATTTCTCATAGTATGATACTT ATATTGCGCTTTTATATTATATCAAAATCAAATCAAAACTATTTTTTTTTTACTTATACTAAATCTCATAACTCTTTTCC TTTTGTAAATTATTTAAGATGGTGGAATCAAGGAGGACTTGGAGAAAAGTTGAGTTTTTTTAGAGAAAGGGTTGTTGATA ACTACATTTGGTCCTTGGGAGCAAATTCAAGGCCGGATCTTGATTTTTTCAGAAAACATATGACAAGGATCATTTCCTTT ATTACCTTAATTGATGATGTTTATGATGTGTATGGTACCTTGGAAGAACTAGAGCGTTTCACAGAAGTAATTGACAGGTT AGCATAGTCACTCCTCACTAATGGTCCATATATATCATTTGTAGATTTTACACCATCAATAATTACGACTAATATTTATT TTGTGAATATAGGTGTGATCTAAGTTCTGTGGATAGTCTCCCAGACTACATGAAAACATGCTTTCAAGCACTCTATAACT TAGTCAATGAAATGGCTTCCGAATATCCAGAGAAGAACGGGTACAATATTAATATCACTTCATACCTAATGAAAGCGGTA AGAATTTTTTTATCCAATCCCTCTTAGTTATCAATTTTCGGTTTGAAGTTGCACACCTAAAAATTTGTTTTTAGTTTATT AAGAATGTTAATTGTTAACTTGTTTGGTCAGTGGGCAAATCTATGTAAAGCATTTTTAAATGAAGCGAAGTGGTACCATA GTGGATATACGCCAAGCTTTGAAGAGTACATACAAAATGGAGTGACTTCCTCAAGTGTGCCTCTTTTACTCACTCATTCT TACTTCTTAATTCCAAATTCATTCAAAGAGGAGGAGATCAAAAATTTGGAAGAGTACCCAGACATAATTTGTTTTGCGGG CAAGATTTTCCGCATGGTTAATGATATTGGAACATATAAAGTATATTACCATTCCCATTCTCATTCTTTGCACAATCAAT ATTATCTTCTCTCTAATTTTTTTACCACTTTAATTTTCAGCGTGAAGATGCGACGGGTGATGTTGCTAAGTCACTTCAAT GCTACATGAACCAAAGTGGAGCTCCTGAAGCAGAAGCTCGTGAGCATTTAACATCGGTGATACATAAAACATGGAAGAAG TTTAATGAAGCGACTCATAATTCTTCTTTCTCCCAAGGTTTTAAAAATACTGTTAGGACCTTTGTAAATGTAGCAATATG GTCGTACCAGCGAGGAGATGGCTATACTATTCATGATCCTGAAATTCAGAGTCTCATTCGATCATTGATGGTTCAACCCA TCCTTCCTTGATACATAGAATTAGTTTATGGAGTACAATATGTAATCTGAGTTTTGATTTAAAGAATAAAGGCTTAATTG CACTTCTGATCTACCTTGTACTGTTCGGGTGATTTTGATCTCCCTAGTTTTTTTCGTTTAATTTTAATCCTAT
CDS sequence (LotjaGi3g1v0249900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTCCTCCAAATTACTTCTCTCCCATTTAGCTTTGCTAAATTGCCTTTACCTCGCGAAACAAAGTCTTCATATCT AGAAAAGAGAAGCTTCAATCTCCATGGTGGAACTCAACCCAAGGCATCATTTAAAGTTTATAATACTAATCAAACAATTA CTCGTCGATCTGCAAATTTTGAACCTTCAACTTGGAGTTATGATTATATCCAATCATTGAGTACTGAATATAAGGAAGAA GTTTACAAAAATCAAGTAAGTGTGCTAAAGGAAAAGGTGAGGATGATGTTTTGCAAAGTAGAAAATGAGCTTGATCAACT TGAATTTATTGATTTATTGCAAAGACTTGGAGTGGAGTATCATTACCCGAATGAAATTAGAAATGTCTTGGACAATATCT ATAAAACAGAAAACTCGAATAATGAAGAGAAGAATTTATATGCCACATCACTCAAGTTCAGACTCTTAAGACAACATGGC TATGATATATCTTCAGATATTTTTATTCGCTTTAAAGATGAAAATGGAAATCTCAAGAAAAGCGAGCACGCTGATGTGGA GGGATTGCTATCATTGTATGAAGCCTCATTTCATTCATTCGAGGATGAAAATATATTGGATGAATTAAAAGATTTTGCCT CCAAATTTCTAAAAGATTATTTGAACGAGGGTAAAGGTGATTATACATCAGATCTAATCAATCATGCTTTAGATTTTCCA TTACATTGGAGAGTTCCTAAGTTCGAGGCTCGGTGGTTCATTAATGTGTACCAAAAAAAGGAAAACATGATTCCTGATTT ACTTCAGTTCGCTAAATTGGATTTCAACATTTCTCAAGCAAACTATCGAGAAGAACTCAAGGAATCATCCAGATGGTGGA ATCAAGGAGGACTTGGAGAAAAGTTGAGTTTTTTTAGAGAAAGGGTTGTTGATAACTACATTTGGTCCTTGGGAGCAAAT TCAAGGCCGGATCTTGATTTTTTCAGAAAACATATGACAAGGATCATTTCCTTTATTACCTTAATTGATGATGTTTATGA TGTGTATGGTACCTTGGAAGAACTAGAGCGTTTCACAGAAGTAATTGACAGGTGTGATCTAAGTTCTGTGGATAGTCTCC CAGACTACATGAAAACATGCTTTCAAGCACTCTATAACTTAGTCAATGAAATGGCTTCCGAATATCCAGAGAAGAACGGG TACAATATTAATATCACTTCATACCTAATGAAAGCGTGGGCAAATCTATGTAAAGCATTTTTAAATGAAGCGAAGTGGTA CCATAGTGGATATACGCCAAGCTTTGAAGAGTACATACAAAATGGAGTGACTTCCTCAAGTGTGCCTCTTTTACTCACTC ATTCTTACTTCTTAATTCCAAATTCATTCAAAGAGGAGGAGATCAAAAATTTGGAAGAGTACCCAGACATAATTTGTTTT GCGGGCAAGATTTTCCGCATGGTTAATGATATTGGAACATATAAACGTGAAGATGCGACGGGTGATGTTGCTAAGTCACT TCAATGCTACATGAACCAAAGTGGAGCTCCTGAAGCAGAAGCTCGTGAGCATTTAACATCGGTGATACATAAAACATGGA AGAAGTTTAATGAAGCGACTCATAATTCTTCTTTCTCCCAAGGTTTTAAAAATACTGTTAGGACCTTTGTAAATGTAGCA ATATGGTCGTACCAGCGAGGAGATGGCTATACTATTCATGATCCTGAAATTCAGAGTCTCATTCGATCATTGATGGTTCA ACCCATCCTTCCTTGA
Protein sequence (LotjaGi3g1v0249900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALLQITSLPFSFAKLPLPRETKSSYLEKRSFNLHGGTQPKASFKVYNTNQTITRRSANFEPSTWSYDYIQSLSTEYKEE VYKNQVSVLKEKVRMMFCKVENELDQLEFIDLLQRLGVEYHYPNEIRNVLDNIYKTENSNNEEKNLYATSLKFRLLRQHG YDISSDIFIRFKDENGNLKKSEHADVEGLLSLYEASFHSFEDENILDELKDFASKFLKDYLNEGKGDYTSDLINHALDFP LHWRVPKFEARWFINVYQKKENMIPDLLQFAKLDFNISQANYREELKESSRWWNQGGLGEKLSFFRERVVDNYIWSLGAN SRPDLDFFRKHMTRIISFITLIDDVYDVYGTLEELERFTEVIDRCDLSSVDSLPDYMKTCFQALYNLVNEMASEYPEKNG YNINITSYLMKAWANLCKAFLNEAKWYHSGYTPSFEEYIQNGVTSSSVPLLLTHSYFLIPNSFKEEEIKNLEEYPDIICF AGKIFRMVNDIGTYKREDATGDVAKSLQCYMNQSGAPEAEAREHLTSVIHKTWKKFNEATHNSSFSQGFKNTVRTFVNVA IWSYQRGDGYTIHDPEIQSLIRSLMVQPILP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 9 | 8 | - | – | |
| Phobius | 10 | 14 | 5 | - | – | |
| Phobius | 15 | 591 | 577 | - | – | |
| PANTHER | 54 | 589 | 536 | 1.7E-202 | – | |
| PANTHER | 54 | 589 | 536 | 1.7E-202 | – | |
| CDD | 55 | 588 | 534 | 0.0 | – | |
| SUPERFAMILY | 62 | 262 | 201 | 3.69E-63 | ||
| Gene3D | 65 | 573 | 509 | 2.8E-186 | ||
| Pfam | 65 | 237 | 173 | 8.4E-52 | ||
| Gene3D | 101 | 262 | 162 | 2.8E-186 | ||
| SUPERFAMILY | 265 | 589 | 325 | 1.27E-91 | ||
| SFLD | 266 | 589 | 324 | 0.0 | ||
| SFLD | 266 | 589 | 324 | 0.0 | – | |
| Pfam | 268 | 535 | 268 | 1.3E-93 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | Terpene synthase activity | Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. | ||
| Molecular function | Lyase activity | Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. |
Expression pattern of LotjaGi3g1v0249900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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