Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0252700.4

Overview

Field Value
Gene ID LotjaGi3g1v0252700
Transcript ID LotjaGi3g1v0252700.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Protein kinase; TAIR: AT1G06390.1 GSK3/SHAGGY-like protein kinase 1; Swiss-Prot: sp|Q39012|KSG9_ARATH Shaggy-related protein kinase iota; TrEMBL-Plants: tr|A0A067FB69|A0A067FB69_CITSI Uncharacterized protein; Found in the gene: LotjaGi3g1v0252700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:42492436..42495740) extracted from Lotus japonicus Gifu genome v1.2.

TACCACCCTTTCTTTCTTAAATTTGCGACTTCTCAAATTAACTTCGCTGCTGCGTATAAATGACTCTGCCGTAACATGCA TGTGATGCTCGATAGATAGGCGCATGGTGTTGCCATATTAAGTGGATGTTTCTAAACCAAATTATTGATGGCCGTTGCTA TAAAGCTAAATTTAACAGCTCTTTAAATAAACAAGTTATCATTGATATTGTATCAATTAAAGTTTGACATTCAAGTTCTA CATTAGGAGAATTGCATGGTCTCATTAAATATCTATTTCTTGCTATAAGTTGCAGGCAATGTCAACTACTGTCATTGAAG GGAATGATGCAGTCACTGGCCACATTATCTCCACCACAATTGGAGGCAAAAATGGTGAACCTAAACAGGTGAGAGCATTT GCTTACCCCCCTTTCCTTCTTGAATTTCAGTGTTTAGTAAAACTTAATTCCATACCCTCTTAAGTTTATTACTTTATATT ATGATTATTGTTTGTTTAATGTGTCACTTCCTTATGGCAATAGAGTGGAACTAGATTTCGGGCTTAGGGAATGGAATATA GATTAACTATGATTTTCCTAATTCTTTTATTCTTCACAACTTCACTTTTATGATTTATTCTCTGATACCACTTGCAGACC ATTAGTTATATGGCAGAGCGTGTTGTTGGCACTGGATCTTTTGGAGTTGTTTTCCAGGTATGGATGAATAATCTCTAAAG GTAACAACTATTCACAAAAGCTTTCTATGCTATCAAGCATTTCATTATTTTCCACCGCTGGGTGGGATTCCTTTTTGACC TGAAATGTAGGCAAAGTGCTTGGAGACTGGAGAGGCAGTAGCAATAAAAAAGGTCTTGCAAGATAGGCGGTACAAAAATC GTGAGCTCCAATTAATGCGCTTGATGGATCACCCAAATGTAATTTCCTTGAAGCATTGTTTCTTCTCCACAACAAGCAGA GATGAACTTTTTTTGAACTTGGTAATGGATTATGTCCCTGAGACATTGTACCGAGTTCTAAAGCACTACAATTCTATGAA TCAGAGAATGCCTCTCATCTATGTGAAATTATATACATATCAAGTACGTATTCTTCCCTGTTTGATTTTTAGTTGATTTG CTGTTCTGAGTTCTGTAGTTTTGAAACCTTACACAATTAAGTTGGCATATGATTTTTAGATCTTTCGGGGATTAGCATAT ATCCATACCGTGCCAGGAGTTTCCCATAGGGATGTGAAACCTCAGAATCTTTTGGTATGTTATTCTTTCACTGTTTCTTC TCAACAAGTTGTATTCATTTGTTCTAAATCTTTTGCATATATAACTACAGGTTCATCCTCTTACTCATCAAGTTAAGCTT TGTGATTTCGGGAGTGCCAAAGTTCTGGTATGTTAAGCTGCATTGTTCTTGTACATATTGTTGCTTTATGCATGTATGCC CCCAAGATAGTGGTGGCTACTGAATCATATGCTCTCCAGTGAATATACCAATGCAAAAGATCTCATAAGATCTTTCCACA AGTGAAATTTTATTTGATCCGTAGATGTGTTCATTACATTTCCGTAAACAGCAGTTAAATGTGATGTTGCTAAGAATCTT GGCTCTGACCCATTGTTTTCTTATTACATGAACAATAAATGGAAGAAAAGTTATCATTGGAATTCCATGTAAATTTTTAT TGCAACTATTAATCTTGTGAAGCTTCTCAAGGCCACAAAATGCTAAGATATAATTATTATACTATTTCTTTAAATAAATT TATATCAGGTCAAGGGTGAATCAAACATCGCATACATCTGTTCACGTTACTATCGGGCTCCAGAACTAATATTTGGTGCA ACAGAATACACAACTTCTATCGATATCTGGTCAGCTGGTTGTGTCCTTGCCGAACTTCTTCTAGGCCAGGTTGTTATACA TTTTGGCAAAACCTATGATCTAATGCTTCTCGTATGTCATGTTTTCAGCTTCTTTCAGAGATATGTTATATTGACTTCTC ATACTTTAAATATCTTTTCAGCCATTATTTCCAGGAGAAAATCAGGTTGACCAACTTGTGGAAATTATTAAGGTAATGTC TTTTCTATATTGATATCTCCATCGATTGTGTGAATATATTTACAGAGGTCGTTAATAGGTGTCTTCTTGTAGGTTCTTGG TACTCCAACTCGAGAAGAAATTCGCTGCATGAACCCGAATTATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTT GGCACAAGGTAACACCATTTCTCCTCTATCCTCCTTTTCATATGCAACAGCCAACAATTGCAATTCAATTTTAAAATTTG CATTTAAAAGAAAACGTGGTTTTAAAACTCAATACCTTGCTTTACAAGTTACAATTGTATTTTGAGGTGCAATCCTTTTT CTTTGTTCTGTAATGAATGAAGCCAACAGCTTTGGTTGATTTACCCTACCTCACTTGGTGGGTTAATCTATTGCAATGTT TTATGTTTCAGGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTACAATATTCACCTAGT CTTCGCTGCACTGCGGTGAGTAGGGAAAACCTTGATACCTTCCTTCACTTCTCCCCTTTTTATGGAAGGAAACACACTGA GGAAGCACATCACAGCAACCTTTATAATATTTATCCTAAAATTTCCTTTTTCTTACCTTATTGCTGTGATATTATATTTG TGATCAAAAGAAAATTAGCTTCTGCTTTACATTAAATCTCTAATATATGAATAATTTTTTTTACACAACATTAGTAAAAA AAATTATGCTTAAACAGCTCTAGACCCATATGCTTAATTGTGTTATATTGTTATGATTTAACATAATTGGCATAATTTTC ACTGATGGCTTTTATTGTTTCAGCTGGAAGCATTGACACATCCTTTCTTTGATGAGCTTCGTGAGCCAAATGCCCGACTG CCAAATGGCCGCCCATTGCCCCCACTTTTTGACTTTAAACAGGAAGTATGTATCTAAATTGGTGTGTTTAAAAGTTATAT ACACGCCTGTTGCTGTGTACTATTCAATATTCATCATTACTCTTGCTTTGTCTACTGCACTGTTCTGCATGATCTAAACA CAAGGGAACCCAATGCAGCGTTTATTTTCATATATTTAAATTGCAAAAAGTACCTCACCTAAAAATTATCTTAATCTGTA ACGAAACTTTGACTACAGTTAGCTGGAGCATCATCTGAGCTGGTAAATAGGCTCATCCCAGAGCACATTAGGCGGCAGGC TGGTATCGGCTTCCCTCATCCGGCC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0252700.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAACTACTGTCATTGAAGGGAATGATGCAGTCACTGGCCACATTATCTCCACCACAATTGGAGGCAAAAATGGTGA ACCTAAACAGACCATTAGTTATATGGCAGAGCGTGTTGTTGGCACTGGATCTTTTGGAGTTGTTTTCCAGGCAAAGTGCT TGGAGACTGGAGAGGCAGTAGCAATAAAAAAGGTCTTGCAAGATAGGCGGTACAAAAATCGTGAGCTCCAATTAATGCGC TTGATGGATCACCCAAATGTAATTTCCTTGAAGCATTGTTTCTTCTCCACAACAAGCAGAGATGAACTTTTTTTGAACTT GGTAATGGATTATGTCCCTGAGACATTGTACCGAGTTCTAAAGCACTACAATTCTATGAATCAGAGAATGCCTCTCATCT ATGTGAAATTATATACATATCAAATCTTTCGGGGATTAGCATATATCCATACCGTGCCAGGAGTTTCCCATAGGGATGTG AAACCTCAGAATCTTTTGGTTCATCCTCTTACTCATCAAGTTAAGCTTTGTGATTTCGGGAGTGCCAAAGTTCTGGTCAA GGGTGAATCAAACATCGCATACATCTGTTCACGTTACTATCGGGCTCCAGAACTAATATTTGGTGCAACAGAATACACAA CTTCTATCGATATCTGGTCAGCTGGTTGTTCTTGGTACTCCAACTCGAGAAGAAATTCGCTGCATGAACCCGAATTATAC AGATTTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0252700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTTVIEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMR LMDHPNVISLKHCFFSTTSRDELFLNLVMDYVPETLYRVLKHYNSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVSHRDV KPQNLLVHPLTHQVKLCDFGSAKVLVKGESNIAYICSRYYRAPELIFGATEYTTSIDIWSAGCSWYSNSRRNSLHEPELY RF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24057
1 223 223 7.1E-149 –
PANTHER
PTHR24057:SF42
1 223 223 7.1E-149 –
Gene3D
G3DSA:3.30.200.20
19 113 95 2.7E-33 –
CDD
cd14137
29 223 195 3.31083E-139
IPR039192
SUPERFAMILY
SSF56112
33 226 194 4.18E-60
IPR011009
SMART
SM00220
34 242 209 2.3E-37
IPR000719
ProSiteProfiles
PS50011
34 242 209 35.156
IPR000719
Pfam
PF00069
34 227 194 1.0E-47
IPR000719
ProSitePatterns
PS00107
40 64 25 -
IPR017441
Gene3D
G3DSA:1.10.510.10
114 234 121 1.3E-36 –
ProSitePatterns
PS00108
155 167 13 -
IPR008271

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0252700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…