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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR039192
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We have found 32 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.753s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0467900.1
n.a. Protein kinase; TAIR: AT4G00720.1 shaggy-like protein kinase 32; Swiss-Prot: sp|Q96287|KSG8_ARATH Shaggy-related protein kinase theta; TrEMBL-Plants: tr|I1N3I7|I1N3I7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0467900 LjG1.1_chr1 97771931 97777816 -
2 domain predictions
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LotjaGi1g1v0749900.1
n.a. Protein kinase; TAIR: AT5G26751.1 shaggy-related kinase 11; Swiss-Prot: sp|P43288|KSG1_ARATH Shaggy-related protein kinase alpha; TrEMBL-Plants: tr|A0A1J7HK82|A0A1J7HK82_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0749900 LjG1.1_chr1 132233661 132238159 -
2 domain predictions
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LotjaGi1g1v0749900.2
n.a. Protein kinase; TAIR: AT5G26751.1 shaggy-related kinase 11; Swiss-Prot: sp|P51137|MSK1_MEDSA Glycogen synthase kinase-3 homolog MsK-1; TrEMBL-Plants: tr|A0A1J7FSZ6|A0A1J7FSZ6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0749900 LjG1.1_chr1 132233976 132237699 -
2 domain predictions
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LotjaGi1g1v0749900.3
n.a. Protein kinase; TAIR: AT5G26751.1 shaggy-related kinase 11; Swiss-Prot: sp|P43288|KSG1_ARATH Shaggy-related protein kinase alpha; TrEMBL-Plants: tr|A0A1J7HK82|A0A1J7HK82_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0749900 LjG1.1_chr1 132233976 132237756 -
2 domain predictions
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LotjaGi1g1v0756100.1
n.a. Protein kinase; TAIR: AT5G26751.1 shaggy-related kinase 11; Swiss-Prot: sp|P51139|MSK3_MEDSA Glycogen synthase kinase-3 homolog MsK-3; TrEMBL-Plants: tr|G7KTQ8|G7KTQ8_MEDTR Glycogen synthase kinase; Found in the gene: LotjaGi1g1v0756100 LjG1.1_chr1 132953752 132958314 +
2 domain predictions
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LotjaGi1g1v0756100.2
n.a. Protein kinase; TAIR: AT5G26751.1 shaggy-related kinase 11; Swiss-Prot: sp|P51139|MSK3_MEDSA Glycogen synthase kinase-3 homolog MsK-3; TrEMBL-Plants: tr|G7KTQ8|G7KTQ8_MEDTR Glycogen synthase kinase; Found in the gene: LotjaGi1g1v0756100 LjG1.1_chr1 132954235 132957479 +
2 domain predictions
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LotjaGi1g1v0756100.3
n.a. Protein kinase; TAIR: AT5G26751.1 shaggy-related kinase 11; Swiss-Prot: sp|P51139|MSK3_MEDSA Glycogen synthase kinase-3 homolog MsK-3; TrEMBL-Plants: tr|G7KTQ8|G7KTQ8_MEDTR Glycogen synthase kinase; Found in the gene: LotjaGi1g1v0756100 LjG1.1_chr1 132954238 132957479 +
2 domain predictions
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LotjaGi3g1v0239700.1
n.a. Kinase family protein; TAIR: AT2G30980.1 SHAGGY-related protein kinase dZeta; Swiss-Prot: sp|Q39010|KSG6_ARATH Shaggy-related protein kinase zeta; TrEMBL-Plants: tr|G7IM77|G7IM77_MEDTR Shaggy-like kinase dzeta; Found in the gene: LotjaGi3g1v0239700 LjG1.1_chr3 38762192 38768322 -
2 domain predictions
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LotjaGi3g1v0239700.2
n.a. Kinase family protein; TAIR: AT2G30980.1 SHAGGY-related protein kinase dZeta; Swiss-Prot: sp|Q39010|KSG6_ARATH Shaggy-related protein kinase zeta; TrEMBL-Plants: tr|G7IM77|G7IM77_MEDTR Shaggy-like kinase dzeta; Found in the gene: LotjaGi3g1v0239700 LjG1.1_chr3 38762731 38766582 -
2 domain predictions
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LotjaGi3g1v0239700.3
n.a. Kinase family protein; TAIR: AT2G30980.1 SHAGGY-related protein kinase dZeta; Swiss-Prot: sp|Q39010|KSG6_ARATH Shaggy-related protein kinase zeta; TrEMBL-Plants: tr|G7IM77|G7IM77_MEDTR Shaggy-like kinase dzeta; Found in the gene: LotjaGi3g1v0239700 LjG1.1_chr3 38762739 38766884 -
2 domain predictions
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LotjaGi3g1v0239700.4
n.a. Kinase family protein; TAIR: AT2G30980.1 SHAGGY-related protein kinase dZeta; Swiss-Prot: sp|Q39010|KSG6_ARATH Shaggy-related protein kinase zeta; TrEMBL-Plants: tr|G7IM77|G7IM77_MEDTR Shaggy-like kinase dzeta; Found in the gene: LotjaGi3g1v0239700 LjG1.1_chr3 38762739 38766884 -
2 domain predictions
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LotjaGi3g1v0239700.5
n.a. Kinase family protein; TAIR: AT2G30980.1 SHAGGY-related protein kinase dZeta; Swiss-Prot: sp|Q39010|KSG6_ARATH Shaggy-related protein kinase zeta; TrEMBL-Plants: tr|G7IM77|G7IM77_MEDTR Shaggy-like kinase dzeta; Found in the gene: LotjaGi3g1v0239700 LjG1.1_chr3 38762745 38766600 -
2 domain predictions
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LotjaGi3g1v0239700.6
n.a. Kinase family protein; TAIR: AT2G30980.1 SHAGGY-related protein kinase dZeta; Swiss-Prot: sp|Q39010|KSG6_ARATH Shaggy-related protein kinase zeta; TrEMBL-Plants: tr|G7IM77|G7IM77_MEDTR Shaggy-like kinase dzeta; Found in the gene: LotjaGi3g1v0239700 LjG1.1_chr3 38762745 38766600 -
2 domain predictions
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LotjaGi3g1v0252700.1
n.a. Kinase family protein; TAIR: AT2G30980.1 SHAGGY-related protein kinase dZeta; Swiss-Prot: sp|Q39010|KSG6_ARATH Shaggy-related protein kinase zeta; TrEMBL-Plants: tr|A0A0L9V5W8|A0A0L9V5W8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0252700 LjG1.1_chr3 42491058 42496746 +
2 domain predictions
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LotjaGi3g1v0252700.2
n.a. Kinase family protein; TAIR: AT2G30980.1 SHAGGY-related protein kinase dZeta; Swiss-Prot: sp|Q39010|KSG6_ARATH Shaggy-related protein kinase zeta; TrEMBL-Plants: tr|A0A0S3SB02|A0A0S3SB02_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0252700 LjG1.1_chr3 42491058 42496746 +
2 domain predictions
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LotjaGi3g1v0252700.3
n.a. Kinase family protein; TAIR: AT2G30980.1 SHAGGY-related protein kinase dZeta; Swiss-Prot: sp|Q39010|KSG6_ARATH Shaggy-related protein kinase zeta; TrEMBL-Plants: tr|I1LSH6|I1LSH6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0252700 LjG1.1_chr3 42492435 42496174 +
2 domain predictions
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LotjaGi3g1v0252700.4
n.a. Protein kinase; TAIR: AT1G06390.1 GSK3/SHAGGY-like protein kinase 1; Swiss-Prot: sp|Q39012|KSG9_ARATH Shaggy-related protein kinase iota; TrEMBL-Plants: tr|A0A067FB69|A0A067FB69_CITSI Uncharacterized protein; Found in the gene: LotjaGi3g1v0252700 LjG1.1_chr3 42492436 42495740 +
2 domain predictions
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LotjaGi3g1v0377100.1
n.a. Kinase family protein; TAIR: AT4G00720.1 shaggy-like protein kinase 32; Swiss-Prot: sp|Q96287|KSG8_ARATH Shaggy-related protein kinase theta; TrEMBL-Plants: tr|Q53VM1|Q53VM1_LOTJA Ser/Thr protein kinase; Found in the gene: LotjaGi3g1v0377100 LjG1.1_chr3 76988557 76994445 +
2 domain predictions
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LotjaGi5g1v0233000.1
n.a. Protein kinase; TAIR: AT3G05840.1 Protein kinase superfamily protein; Swiss-Prot: sp|P51137|MSK1_MEDSA Glycogen synthase kinase-3 homolog MsK-1; TrEMBL-Plants: tr|Q53VM0|Q53VM0_LOTJA Ser/Thr protein kinase; Found in the gene: LotjaGi5g1v0233000 LjG1.1_chr5 54040914 54045900 -
2 domain predictions
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LotjaGi5g1v0233000.2
n.a. Protein kinase; TAIR: AT3G05840.1 Protein kinase superfamily protein; Swiss-Prot: sp|P51137|MSK1_MEDSA Glycogen synthase kinase-3 homolog MsK-1; TrEMBL-Plants: tr|Q53VM0|Q53VM0_LOTJA Ser/Thr protein kinase; Found in the gene: LotjaGi5g1v0233000 LjG1.1_chr5 54041792 54044915 -
2 domain predictions
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LotjaGi5g1v0241000.1
n.a. Protein kinase; TAIR: AT5G26751.1 shaggy-related kinase 11; Swiss-Prot: sp|P51139|MSK3_MEDSA Glycogen synthase kinase-3 homolog MsK-3; TrEMBL-Plants: tr|A0A0B2NY95|A0A0B2NY95_GLYSO Glycogen synthase kinase-3 like MsK-3; Found in the gene: LotjaGi5g1v0241000 LjG1.1_chr5 54932018 54936483 +
2 domain predictions
 –
LotjaGi5g1v0241000.2
n.a. Protein kinase; TAIR: AT5G26751.1 shaggy-related kinase 11; Swiss-Prot: sp|P51139|MSK3_MEDSA Glycogen synthase kinase-3 homolog MsK-3; TrEMBL-Plants: tr|A0A0B2NY95|A0A0B2NY95_GLYSO Glycogen synthase kinase-3 like MsK-3; Found in the gene: LotjaGi5g1v0241000 LjG1.1_chr5 54933066 54935780 +
2 domain predictions
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LotjaGi5g1v0241000.3
n.a. Protein kinase; TAIR: AT5G26751.1 shaggy-related kinase 11; Swiss-Prot: sp|P51139|MSK3_MEDSA Glycogen synthase kinase-3 homolog MsK-3; TrEMBL-Plants: tr|A0A0R0L0N7|A0A0R0L0N7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0241000 LjG1.1_chr5 54933069 54935780 +
2 domain predictions
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LotjaGi6g1v0321300.1
n.a. Kinase family protein; TAIR: AT4G18710.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q39011|KSG7_ARATH Shaggy-related protein kinase eta; TrEMBL-Plants: tr|I3T330|I3T330_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0321300 LjG1.1_chr6 63768493 63773057 -
2 domain predictions
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LotjaGi6g1v0321300.3
n.a. Kinase family protein; TAIR: AT4G18710.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q39011|KSG7_ARATH Shaggy-related protein kinase eta; TrEMBL-Plants: tr|I3T330|I3T330_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0321300 LjG1.1_chr6 63769491 63772224 -
2 domain predictions
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LotjaGi6g1v0321300.4
n.a. Kinase family protein; TAIR: AT4G18710.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q39011|KSG7_ARATH Shaggy-related protein kinase eta; TrEMBL-Plants: tr|I3T330|I3T330_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0321300 LjG1.1_chr6 63769491 63772395 -
2 domain predictions
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LotjaGi6g1v0321300.5
n.a. Kinase family protein; TAIR: AT1G06390.1 GSK3/SHAGGY-like protein kinase 1; Swiss-Prot: sp|Q39011|KSG7_ARATH Shaggy-related protein kinase eta; TrEMBL-Plants: tr|I3T330|I3T330_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0321300 LjG1.1_chr6 63769664 63772223 -
2 domain predictions
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LotjaGi6g1v0321300.6
n.a. Kinase family protein; TAIR: AT4G18710.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q39011|KSG7_ARATH Shaggy-related protein kinase eta; TrEMBL-Plants: tr|I3T330|I3T330_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0321300 LjG1.1_chr6 63769866 63772223 -
2 domain predictions
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LotjaGi6g1v0364700.5
n.a. Protein kinase; TAIR: AT1G09840.1 shaggy-like protein kinase 41; Swiss-Prot: sp|Q39019|KSG10_ARATH Shaggy-related protein kinase kappa; TrEMBL-Plants: tr|V4T0F2|V4T0F2_9ROSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0364700 LjG1.1_chr6 67676415 67683893 -
2 domain predictions
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LotjaGi6g1v0364700.6
n.a. Protein kinase; TAIR: AT1G09840.1 shaggy-like protein kinase 41; Swiss-Prot: sp|Q39019|KSG10_ARATH Shaggy-related protein kinase kappa; TrEMBL-Plants: tr|Q1SL21|Q1SL21_MEDTR Protein kinase; Found in the gene: LotjaGi6g1v0364700 LjG1.1_chr6 67676823 67682992 -
2 domain predictions
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LotjaGi6g1v0364700.7
n.a. Protein kinase; TAIR: AT1G09840.1 shaggy-like protein kinase 41; Swiss-Prot: sp|Q39019|KSG10_ARATH Shaggy-related protein kinase kappa; TrEMBL-Plants: tr|Q1SL21|Q1SL21_MEDTR Protein kinase; Found in the gene: LotjaGi6g1v0364700 LjG1.1_chr6 67676823 67682992 -
2 domain predictions
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LotjaGi6g1v0364700.8
n.a. Protein kinase; TAIR: AT1G09840.1 shaggy-like protein kinase 41; Swiss-Prot: sp|Q39019|KSG10_ARATH Shaggy-related protein kinase kappa; TrEMBL-Plants: tr|I1LTB4|I1LTB4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0364700 LjG1.1_chr6 67677434 67682432 -
2 domain predictions
 –