Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0264400.1

Overview

Field Value
Gene ID LotjaGi3g1v0264400
Transcript ID LotjaGi3g1v0264400.1
Lotus japonicus genome version Gifu v1.2
Description Gag-Pol polyprotein; TAIR: AT3G42860.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q1A249|POL_SIVEK Gag-Pol polyprotein; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi3g1v0264400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:49213503..49214819) extracted from Lotus japonicus Gifu genome v1.2.

CTGGCAACTTATCTACTACTGGGCGATGCTGAGTACTGGTGGAGGGGCACCAGAGGGATGATGGAGGCAAACCATGTTGA GGTGAACTGGGATTCTTTTCGTGCCGCCTTTCTGGAGAAGTATTTTCCTGATAGTGCTCGTGACGAGCGTGAGTCGCAGT TTCTGACTCTTCGTCAAGGGAGCATGACTATTCCGGAATATGCTGCTAAGTTAGAATCTTTGGCCAAACACTTCCGATTT TTCCGTGATCAGGTTGATGAACCCTATATGTGCAAGCGCTTTGTGAGGGGACTGAGAGCTGACATTGAAGACTCAGTGAG ACCGTTGGGGATTATGAGGTTTCAAGCTTTGGTTGAGAAGGCCACCGAGGTGGAACTGATGAAGAATAGGAGGATGGACC GGGCTGGAACTGGGGGACCAATGAGGTCGAGTTCCCGGAGCTATCAAGGAAAAGGAAAGTTTCAGATGAAGAAGCCTTAT CAGCGTCCTGTGGGGGAAAGGTTTACCCCAGGATCGTACAAGCCTATGGTTACGGCTGCTGCTGGAGGAACGGGAAACCA GATTGCAATCCAAGATGTGAAATGCTTCAGGTGTGGAAAGTTGGGACACTATGCAAGTGCGTGCTCAGAACCGAGGCCCA AGTGTTTCAACTGCAACCAACCGGGGCACAACGCCAGTCAGTGTAGGGCACCCAAGGCGGAGCCGTCTGTCAATGCTGCA AGGGGAAAGCGCCCTGCTGCTAGAGGAAGGGTTTATATCATGGACGGTGAAGGAGCTGAGGGGTTAGCCAGAGGTGAGTG CAAGAACGATGGTAACCTTCTAACTATTCTTTCTCATTCTAGTACAACATGCTCATCATTACTCTCGTAGAATGTGCAAC ACACCTAACTTAGTTATACTGTTTGAGCTTTGACCTTACAGTTATTACACCTACTAAGAATTTATTTGACTGCCGCTCGT GTTTTAACTATAGAAGTTACACGAGGTTTAGAATAACACACTAAGTCTAGAAAGTAGTCTTCCACCAATGCGATTATAAG GAAGCTAGTAGCTGGGGAACGAATCTTAGAGAGATTCCTTATGGGTAGTATACGCGTTATGTTGAGGGTGCGTAGTTCCG TAGCGGGACCGTTAAGGATTGGATGTCGGGATAATTGTGACTACTGGATGATAGGAACTCATTGACTGTTCCGGTGGGTT TTTCTAAATTTCACCTTCGATGTACTAGGCTTGATCAACTTAATATTGAGGGGGTGATATTCGGAATCAGAACTGGTTAT GGACTTTGATAGAAGGACGGGTAAGATGAATTTGAAT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0264400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGAGGCAAACCATGTTGAGGTGAACTGGGATTCTTTTCGTGCCGCCTTTCTGGAGAAGTATTTTCCTGATAGTGC TCGTGACGAGCGTGAGTCGCAGTTTCTGACTCTTCGTCAAGGGAGCATGACTATTCCGGAATATGCTGCTAAGTTAGAAT CTTTGGCCAAACACTTCCGATTTTTCCGTGATCAGGTTGATGAACCCTATATGTGCAAGCGCTTTGTGAGGGGACTGAGA GCTGACATTGAAGACTCAGTGAGACCGTTGGGGATTATGAGGTTTCAAGCTTTGGTTGAGAAGGCCACCGAGGTGGAACT GATGAAGAATAGGAGGATGGACCGGGCTGGAACTGGGGGACCAATGAGGTCGAGTTCCCGGAGCTATCAAGGAAAAGGAA AGTTTCAGATGAAGAAGCCTTATCAGCGTCCTGTGGGGGAAAGGTTTACCCCAGGATCGTACAAGCCTATGGTTACGGCT GCTGCTGGAGGAACGGGAAACCAGATTGCAATCCAAGATGTGAAATGCTTCAGGTGTGGAAAGTTGGGACACTATGCAAG TGCGTGCTCAGAACCGAGGCCCAAGTGTTTCAACTGCAACCAACCGGGGCACAACGCCAGTCAGTGTAGGGCACCCAAGG CGGAGCCGTCTGTCAATGCTGCAAGGGGAAAGCGCCCTGCTGCTAGAGGAAGGGTTTATATCATGGACGGTGAAGGAGCT GAGGGGTTAGCCAGAGGTGAGTGCAAGAACGATGGTAACCTTCTAACTATTCTTTCTCATTCTAGTACAACATGCTCATC ATTACTCTCGTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0264400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMEANHVEVNWDSFRAAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPYMCKRFVRGLR ADIEDSVRPLGIMRFQALVEKATEVELMKNRRMDRAGTGGPMRSSSRSYQGKGKFQMKKPYQRPVGERFTPGSYKPMVTA AAGGTGNQIAIQDVKCFRCGKLGHYASACSEPRPKCFNCNQPGHNASQCRAPKAEPSVNAARGKRPAARGRVYIMDGEGA EGLARGECKNDGNLLTILSHSSTTCSSLLS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR34482
5 231 227 4.6E-31 –
PANTHER
PTHR34482:SF4
5 231 227 4.6E-31 –
Pfam
PF03732
8 80 73 2.0E-12
IPR005162
MobiDBLite
mobidb-lite
114 137 24 - –
Gene3D
G3DSA:4.10.60.10
160 219 60 1.8E-13 –
SUPERFAMILY
SSF57756
171 212 42 8.14E-12
IPR036875
Pfam
PF00098
175 190 16 4.0E-5
IPR001878
ProSiteProfiles
PS50158
175 191 17 9.9
IPR001878
SMART
SM00343
175 191 17 0.0038
IPR001878
Pfam
PF00098
194 210 17 1.6E-4
IPR001878
SMART
SM00343
195 211 17 8.0E-4
IPR001878
ProSiteProfiles
PS50158
195 210 16 9.57
IPR001878

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0264400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…