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LotjaGi3g1v0272700.2

Overview

Field Value
Gene ID LotjaGi3g1v0272700
Transcript ID LotjaGi3g1v0272700.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Tetratricopeptide repeat-containing family protein; TAIR: AT3G07370.1 carboxyl terminus of HSC70-interacting protein; Swiss-Prot: sp|Q9SRS9|CHIP_ARATH E3 ubiquitin-protein ligase CHIP; TrEMBL-Plants: tr|I3SQ71|I3SQ71_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0272700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:52841845..52842464) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGGCCAAACGCTACGGCGGCGAAACAAGCGGAGCAGCTTAGAATAGACGGCAACAGTTACTTCAAGAAAGACCGTTT CGGTGCCGCGATCGATGCTTACACCGAGGTATCGTCGAAACTTTTCTCGACTCTCATTTCTCTCTTGGCAAAAATGAAAA CTTTGGGTTTGCTCTTAATTTGTTTCGTTTCAAGGCTATCACGCTCTGTCCCAATGTTCCGGTTTATTGGACCAATCGTG CTCTTTGCCATCTCAAACGCAAGTACGTAATTTGATCTCGCACTGTTTTTTTCTTTTCTGAATCTTGATTATGTTGTTGT CGTTAGGGTTTTAAATTTCAATTGTGGCAACTGCAAATTTAACACTTTTTTCTTTGTTTGTAGTAACTGGGAGAGGGTAG AGGAAGACTGTCGGAGAGCGATTCAACTGGACAGCAATTCGGTTAAGGTCTTTGTGATCTATCTCCTTGTTATTTGTTAT TCCTATTGTCTCAGGAACTATTTAGCTTTTATCCCTTGCTTCATTAACTGGTTAGGCATAGTCTATTTCATTTTGAATTG ATTTTGTTGCGTATTTAGTTGTGTGTTGGGTTAGATGTATTTATGCTTGATAAAGCATAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0272700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGCCAAACGCTACGGCGGCGAAACAAGCGGAGCAGCTTAGAATAGACGGCAACAGTTACTTCAAGAAAGACCGTTT CGGTGCCGCGATCGATGCTTACACCGAGGCTATCACGCTCTGTCCCAATGTTCCGGTTTATTGGACCAATCGTGCTCTTT GCCATCTCAAACGCAATAACTGGGAGAGGGTAGAGGAAGACTGTCGGAGAGCGATTCAACTGGACAGCAATTCGGTTAAG GTCTTTGTGATCTATCTCCTTGTTATTTCATAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0272700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGPNATAAKQAEQLRIDGNSYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRNNWERVEEDCRRAIQLDSNSVK VFVIYLLVIS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46803
4 87 84 9.5E-42 –
PANTHER
PTHR46803:SF3
4 87 84 9.5E-42 –
Gene3D
G3DSA:1.25.40.10
4 87 84 5.8E-27
IPR011990
SUPERFAMILY
SSF48452
9 82 74 5.14E-20
IPR011990
SMART
SM00028
11 44 34 0.003
IPR019734
ProSiteProfiles
PS50005
11 44 34 9.204
IPR019734
ProSiteProfiles
PS50293
11 78 68 13.033
IPR013026
SMART
SM00028
45 78 34 8.8E-5
IPR019734
ProSiteProfiles
PS50005
45 78 34 6.815
IPR019734
Pfam
PF00515
47 77 31 2.8E-7
IPR001440

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0272700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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