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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0277700 |
| Transcript ID | LotjaGi3g1v0277700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|V7AJ33|V7AJ33_PHAVU Histone H4; Found in the gene: LotjaGi3g1v0277700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:55123675..55127871) extracted from Lotus japonicus Gifu genome v1.2.
TGAACCGTAGATAGAAAACAAATCGACCGTCCTAACACCTTTGAAAACCCATCACACGGATCAACGCATGGCTCCTTTTT CCATTAAACAACCTATAAAAAACACACACAGCATCTCACAATCTCCATCACTCGAATTTACCCTCTCTTCTCTCTGCATC TTCAAACTCTCTCTCTCTTCACAGCTAGTTTCAAGGTTCACCATGTCTGGGCGTGGAAAAGGAGGCAAGGGATTGGGAAA GGGAGGAGCGAAACGACACCGTAAGGTTCTCCGCGACAACATTCAGGGAATCACGAAGCCAGCGATTCGGCGTTTGGCTC GCAGGGGTGGCGTGAAGCGTATCAGTGGCTTGATCTATGAGGAGACTCGTGGTGTTCTGAAGATCTTTCTTGAGAATGTG ATTCGTGATGCTGTTACCTACACTGAGCATGCTAGGAGGAAGACTGTTACTGCTATGGATGTTGTGTATGCTCTCAAGAG GCAGGGAAGAACCCTCTATGGATTTGGGGGTTAGGGTTTCACTGTTTTCTATTAATTTGGTCAATTGATATGTTTGGTTT AATTTGTGGGTGAGTAAAAGTCTTGCTGTCAAGAAACAAAACATGGCAAGAATTGGGGGTGCTGGGTTTGATTTGATAGA TTGTTGGTGGTGTTTTTAGGATAGAGAAAGAGATTAGCTGCAGTTTTATGTATTGGGTTATAAGAAGTACTTTTCTTTTT GATCTGCAATGTAACTACTTGTTGCGATGTGTAACAATTTATGTTATTAGTTCACTTTTCTGTTCAGTAATTCTCTTTTA CCGTGTTGAAATGTGCTAATTTTCATCCATATGTTGACTTATCTTCGATTCACATTGGATTAACCCAGCGAATGTAGTTG GGTTAACTACACCTCCTTGTTATGAGATTTTCTCACTAATTTGATTTTATTGATTCACATTTCGTTGATCCTTTCTATTA TCCAAAACTTGTCTCATGATTGCCATACATACAATGAAGATCCCTTTAGCTGAATTATGCTAATTATGCTAACAAGTTAT CCTGGCGGTGCTCTAGAATGGAGAGTTTTGTCGCCCATTTCTTGCAATGAGACGAGGGGAAAGTGTATTGAACTGTATAT ATCTAATTCTGATAAGTTATAACGGAATGTACTAATTGTTGGTGTTATAATTTGCGATTATGCATCATTTAGGGGGAACG GACAAACGGTGATGCTTGTCATTGCTTTGTCGAGTGTTGATGATGATTGCCTCAATTTGATGATTGCCCCAATTCTGATT CAGGCTTATCTGGCTGAGGTTATCAACTCTGGTGCGTGTATAGTCAAATTTAGAGCTTTGACGAGTAAAGAAGCTTGAGA ATTGAGATATCTGTCACTCAGGGAGAGGAACTTTTATCATGAAAGAGAAATTGAAAAAGCTGAAATTGCTGCTGAAAAAA TGGAATGCTGAGTCTTTCGGTGATTTGGCAGCAAAGAGGAAAGAAACTATTTTGAAGATGAATGAATTAGATTTGAAGGC CATGGATCAGCTCATTTCTGACGAGGAGATTATGGATAGGAAATTACTGATAGAGGAATATTGGAGGCTCACCAATCTTC ATGAATCTCTTCTCCGTCAAAAATCTAGAGTTCAATGGATAAAAGAAGGGGATGCTAATTCTGGTTTTTTCCACAGAATG ATCAATTGGAGGAGGCGTGTAAATGCTTTAAATGGGCTGTCTTTGGATGGTCAGTGGGTTGAGGAGGCTGCAACTGTGAA AGAAGGTGTGAAGAATTTCTTTGAGGAGAAATTCAGGGATATTGAAGGGGTCTCTCCTACTCTTGACAGTGTCTCCTTTA ATCAGATTTCTGAGTTAGATAATGTCATGTTATCAGCACCTTTTGATTTGGATGAAATTAGAGATGCGGTGTGGAGCTGT GATGGAAACAAAAGTCCGGGACCCGATGGCTACAATTTCAAATTTATCAAGGAGTTTTGGGAGATTTTGAAGGATGATTT GAAGAGGATGGTTGACGACTTCTTTTCCAAAGGTAACTGGCCAAGGGGGACTAACTCTTCGTTCATTACGCTTATCCCTA AGAAGGACTCCCCGCAAAGTCTTAATGATTTTCGACCAATTTCTTTGGTAGGATGTCTTTATAAATTGATAACGAAGATG CTTGCTGCTAGGATCAAGCTCGTATTACCTAAAGTAATTCATGAAAATCAGTTTGCTTTTCTTGAAGGGAGATGTATGCT TGATTCTGTGGTTATTGCAAATGAGATAGTCCATGAGGCGAAGGTGAGAAAAGTCTCCTCTCTTATTTTCAAAGTTGACT TTGAGAAGGCATACGATTCAATCCGATGGAAATTCCTTGTGTATATGATGAGGAGACTAAATTTTTGTGAGAAATGAATC AAGTGGGTTGTAAGCTGTCTTGACTCTTCTTTTGTCTCTGTTTTGGTTAATGGGAGCCCTACGGGTGAATTCAGGATGGG AAAAGGAATTAGACAAGGGGACCCTCTTGCCCCTTTCTTATTTCTTATTGTAGCAGAGGGATTAAATGGCCTTATGCGAC AAGCGGTGTTGGCTAATAAATTCACTCCATTCAGTTTTGGGTCTAATGACCATGTGGCTGTGTCTCTTCTTCAATTTGCA GATGATGCACTTTTTATGGGGGAGGCAAGTCTGCAGAATGTGATTTCTCTGAAAAGCGTTATGCGATGCTTCGAGTTGGT GTTAGGTATGAAGGTCAACTTTCATAAAAGTAAATTAGCAGGAATTTCTTTGGCTGTTCCCACTGTAAATCGCTTTGCGG CCTTGCTGAATTGCCGAGTCATGATCGCTCCCTTTACCTACCTTGGTTTACCTGTGGGAGGGAATCCAAGGCGCATCTCT TTTTGGGACCCAATTGTGGATAAATTTAGAAGGAAGTTGGCTAGTTGGAAGGGGAAGCAGCTGTCATTTGGAGGGAGAAT TTGCTTGATAAAGAGTGTGCTAAGTGCTTTACCACTATTTTTCATCTCCTTTTATAGACTGCCGAAGGGGGTAATCAAGA AATGTAATCAAATCATGATGCGCTTTCTATGGGGTGGCAGTGATGAAGTGCGGAAGTTGGCGTGAGTGAGTTGGGACCAG ATCTGTAGACCTAAAGCAGAGGGGGGCCTTGGTGTCAAGGATCTTGATAAATTTAATATTGCTCTTCTCGGTAAATGGCG GTGGCGTATGCTTCAGGAAAAGGACAGATTATGGTGCAGTATTCTCTGGCTTAAATATGGTACTGTTAATGGTAATCTCT CTAGAACTTCCACATGGTGGAAGGACTTATCTAAGTCTTGTGTGGGTCTTGAGGCTGGGAATTGGTTTGAAAATTGCCTT TGTCGGAGAATTGAGGAGGGTGTAGAAGCTTGGCGATGGATTAAAGAGAGTAATGGGTTGTACTCAATAAGTTCAGCTTA TGCTGCACTTGCCGAATCTGATGTTGGGCTGGAACGATTGGAGTTTAAGTTGCTTTGGAAGGTCCCTGTCCCTTCAAATG TTTCTGCTCTCTGCTGGAAGTTATTTCTAAACCGGTTACAAACGAAGGATAATTTAGTTCGCAGGAACATTGTAATCACT GATGTTTCTTGCCCACTGTGCTTGGAGATGGCAGAATCCTCTTCCCATCTGTTTTTCTCTTGTGCTGTGTCATGGAGAAT TAGGTCGTGGGTTTTTAACTAGTTGGGTAAGTATTTTGTTATGCCTTTATTGCTGTTGATCACTTCTTTCAGTTCACTTG GGATGGTTGTTCTGTAATCCGTGAAGGTTTGATGGCCATTTGGGTGGCGGTCATTTGGAGTATATGGCTGGGTAGGAATG CATCGTGCTTTTGCGGAGAAGCGTTTGTTCCAGAAGTGATTTTTGAGGAGATAAAAATGAAAGCTTGGTGCTGGTTAAGA TTTAAGGGTAGGAATTTTCATCACTCTTTGTATGAATGGCTAAATGAACCCATGTGCTGCCTTCGTGACAGAGGATAACT AGCTGATTTTTCCTATCTGTGTGAAGTTTCTACTTTGCTCACTTGGTGGTGATTTGGCAATTGCTTTGCTTTGTCTTACT GGTATCTTTGCAAGAAAGGGAGGGTCCATGTTTAAATTGGTGGTCTGCATTGTTTCTAAGGGGCTTTTCTTGTATTTGTC ATTTGTAACATTTGTATCTTTTCTTTCTTCCTCTAGA
CDS sequence (LotjaGi3g1v0277700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCTTTTTCCATTAAACAACCTATAAAAAACACACACAGCATCTCACAATCTCCATCACTCGAATTTACCCTCTC TTCTCTCTGCATCTTCAAACTCTCTCTCTCTTCACAGCTAGTTTCAAGGTTCACCATGTCTGGGCGTGGAAAAGGAGGCA AGGGATTGGGAAAGGGAGGAGCGAAACGACACCGTAAGGTTCTCCGCGACAACATTCAGGGAATCACGAAGCCAGCGATT CGGCGTTTGGCTCGCAGGGGTGGCGTGAAGCGTATCAGTGGCTTGATCTATGAGGAGACTCGTGGTGTTCTGAAGATCTT TCTTGAGAATGTGATTCGTGATGCTGTTACCTACACTGAGCATGCTAGGAGGAAGACTGTTACTGCTATGGATGTTGTGT ATGCTCTCAAGAGGCAGGGAAGAACCCTCTATGGATTTGGGGGTTAG
Protein sequence (LotjaGi3g1v0277700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPFSIKQPIKNTHSISQSPSLEFTLSSLCIFKLSLSSQLVSRFTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAI RRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 29 | 148 | 120 | 4.5E-79 | – | |
| PANTHER | 29 | 148 | 120 | 4.5E-79 | – | |
| Gene3D | 47 | 148 | 102 | 6.2E-60 | ||
| SUPERFAMILY | 48 | 147 | 100 | 1.73E-31 | ||
| PRINTS | 50 | 61 | 12 | 7.1E-63 | ||
| ProSitePatterns | 60 | 64 | 5 | - | ||
| SMART | 61 | 135 | 75 | 2.0E-29 | ||
| CDD | 63 | 146 | 84 | 1.91112E-48 | ||
| PRINTS | 65 | 84 | 20 | 7.1E-63 | ||
| Pfam | 83 | 141 | 59 | 4.9E-8 | ||
| PRINTS | 85 | 105 | 21 | 7.1E-63 | ||
| PRINTS | 107 | 121 | 15 | 7.1E-63 | ||
| PRINTS | 122 | 134 | 13 | 7.1E-63 | ||
| PRINTS | 134 | 145 | 12 | 7.1E-63 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi3g1v0277700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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