Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0277800 |
| Transcript ID | LotjaGi3g1v0277800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q864S8|BRCA2_FELCA Breast cancer type 2 susceptibility protein homolog; TrEMBL-Plants: tr|A0A151QSM9|A0A151QSM9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0277800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:55127932..55132828) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTATTGTACAGAATAATCAGTTTTTTCATTGAATGAATTACACAATTATATTTTCCACATGGTATCAGATGATTCTA TTCTCGTTTTTCTCTCGCTTTCTCTCATTTTTTTTTTCTCGTTCGCTTCCGCATTCGTGGTTGATCTTCTTCTCTTGATT TCGTGATTTTGGTTGAGGCGTTGATTTTGATTTCTTCGATCTCCAGCCTATGTTCTTTGATCTCTTCGCAGTCTTGGGTT CGATTGGTTGAAGCGTTGATCTCTCTCTTCTCTGATTTCTGTTCTTCAATTTCTTCTCAGTTTTGTGCCCTAGTTGATTG TTTTGTTGCTGATTGTTGAAGATTCATGGTGAATCCTCCGATTGATGTTCACAGTCCTTACTATCTTCATCCTAATGAGA ATCCCGGTGCGAATTTGGTGACTGCATCTCTGGTTGGCAATAACTACCATTCTTGGTCTCAGGCCATGTGGCGTTCTTTG AAGACCAAGAACAAACATGGGTTTGTTGATGGTTCCCTTCCGAAACCTGCAGCTGATGATCCTTTATTTGGTGTATGGGA TCGCTGCAACACTTTGGTGATTTCTTGGCTTACACAAGCAATGGATCCGGTTATAGCTCAAAACATTTTGTGGATGGATC TTGCTTCTGAGATCTGGGCAGATTTGAAGTCCAGATATTATCAAGGTGATTTGTTCAGAATTTCAGATCTTCAAGAAGAG TTGTATTCTCTTAAACAAGGTGACATGCCTATCACTACTTACTTTACTCGATTGAAGAGTTTATGGCAAGAATTAGAAGC TTTTAGGCCAATTCCTTCTTGTACCTGTGCTGTTTCTTGTACTTGTGATTTGATTCCAATTGTTAAAAGCTATAGAGACA GTGATTATGTGATAAGATTTCTCAAGGGTTTGCATGAGAATTATGCTGCTGTGAGGTCCAGTATCATGTTAATGAATCCT TTGCCCCCAATTTCCAAGGTTTTTTCCTTGCTAGTCCAGCAAGAGAGACAGTTTAATTCAGTCAATCTTGAAGAGAGTAA AATCTTAGCCTATCATTCAGATGCTGGAAAAAAGTATGCTCATAATGCAGATCATGATAGTCATGAACAAGATAGATCCA AAAGAACTCCATATCCTTCAAAGGGAAAAGGAAATAGTGGTCGATATGCTGCAAAAGAGTGTAGTTTCTGTCTCAGGTCT GGTCATACAGTTGATTACTGTTACAAGAAATATGGGTACCCTCCTAATTTCAAGAAGAATGGGAGTTTTAATTTTGTTAC TCAAGAAGATGGTGATGATTTTGATGCCAAATCGGCTTGTTCTTTTAAGCCTGAAGTCAATCATTCAACACCGGGGTTTA CTGCTGAGCAATAGAAGACTCTATTGGCTTTATTGTCTCCGTTTTCTACCAGTTCTGGTCAGGCTTCATCAAGTAATCAG ATTGCTACTGTTGTAGCAGAAAATGGTTCTGGCAATACATCAGGTATACATTGTACTACTACTGCAGTCTCTGGGGTTAT TTTAGCAGCTTCTGGAATTTTTGCTAAGCATGATTGGTTATTAGACACTGGTGCTACTCATCATGTGTGTCATAATTTGG ATGTTTTTCAAGCTAGACAAGTTCATCCAGTGCTTTTGTCTATGCCTAATGGACAAAAAGAAATTGCACATATGGCAAGC TCAGTTTATTTCTCAGAGAAGTTATTTTTAGCCAATGTCCTATATGTTCCATCTTTTAATTTCAACCTTATCTCAGTTTC AGCTCTTGTTAAGTCCTTAAGCTGTAGATTAGACATTTTTTATGGATGTTGTTTGCTTTAGGAACGCCCTACCCTGAAGA CGATTGGTGCAGCTGAGGAGAGGGGTGATTTATATGCACTGATAGATCCAGCAGTCAAGGTCAAGCATCCCCCAGTTGAA GACAACATCAAGACTCAAGTCTCTCATTTCAATTTCTGCCAATTTGATTGTAATTTGTGGCATTTACGATTAGGACACAC TTCTTCTAAGAAGTTAGCCATTCTTCAGAAAAATTTCCCTTTTATTACTTGTAAGAAGATTACTTCTCCTTGTGATACTT GCCATATGGCAAAACAAAAAAAATTGTCTTTTCCAAATAGTGTAACATTGTCTTCTGAGATTTTTGATCTTATTCACACT GATATTTGGGGTCCCATTGCAAATGTGTCTACTTCTGGTCATCGATATTTTTTGTCAATTGTTGATGATAAATCTAGATT CACTTGGATTTATTTCATGAAACAAAAGTCAGAAACTTCCAGTTTGATTCAGTCTTTCATAACTTATGTTCAAACTCCGT TTCATAGAAAAGTTAACCATTCGATCAGATAATGGACTTGAGTTTCAAATGCTAGATTTTTATGCTAAACAGGGCATTAT TCATCAAACTTCTTGTCCATATACTCCACAACAGAATGGAGTGGTGGAGAGGAAGCATCAACATTTGTTAGAAGTCACTA GAGCTTTGTTTTTTCAGTCACATGTGCCTAAAACTCTATGGCATTTTGCAATGACACATGTAGTTTACATTATTAACAGA TTGTCATCAGTAAAGTTACAATCTCAATCTCCTTTTCAAATTCTCTACAATGCTTTACTTGATCTCCAACATCTTAAAAT CTTTGGCTGTCTTTGTTATGTTTCTTCTTTGCCAGTTCATAGAGGTAAATTAGATCCCAGGTCCCACAAATCAGTTTTCT TAGGTCATAAATCAGGGGTCAAGGGTTACATTACTCTAAATCTTACAACAAAGGAAGTCACAATTTCTAGGCATGTGCAT TTTCATGAGCACATTTATCCTTTTGTTGACAAAACTGTTTCTTTAGTCCCAAGTGAACTACCGGTTGTTCCTGTGTTCCC TAAGACCACTTCTCTGGACTTACCTTATTCTGATGACCAACCACAAAATCATACTGAGGCAGAACAATTGAATGAGGAGA TTCCTATACCTGAACTAAGAAGATCTATGAGGCAGAGAGTAGCACCACAGCGGCTGGCCGATTATTACTGCAACTTGACC ACCACCTCAGCAACACCATCTTCTTCTATTGTCAGGTATCCTCTTACCAATCACATGACATATTCACATTTATCTAAACC TCACCAGAATTATTCTTTAGCTATATCTGCTGTGATTAAACCAAAAACATACAAAGAGGCCATTACACAGCCATGTTGGA AATAAGCTATCAATTCTGAGTTGTAGGCTTTGCATAACACTCATACTTGGGTTTTAACTCCTCTTCCTGCAAGTAAGAAG ACTATTGGCTGTAAATGGGTTTTTAGAGTAAAACACAGGGAATATGGTACAGTTGAAAGATGCAAAGCTAGGTTAGTAGC TAAAGGATTCACACAAACTGAATGCATTGATTTCCTGGAAACTTTCAGTCCAGTGGTGAAGATGACCACAGTCAGAGTTA TTTTAGCCTTGGCTTCTATTCATAATTGGCATCTGAAGCAGCTTGATGTTAACACAACATTTCTTCATGGTGATCTTGAT GAAGAAGTCTACATGGAACATCCTCCTGGTCTTGATTTACCTCAACCTGGCATGGTCTGCAAGCTCATCAAGTCCTTCTA TGGATTGCAACAAGCAAGTAGGCAATGGAATGCTAAGTTGACAGAAGTATTGATACAACAAGGTTACTTTCAATCCAAGG CTGATTATTCTCTTTTTACCAAAAGAGAAAATGGTTCATTTACAGTGATCCTGGTTTATGTCGATGATTTGATGTTAACT GGTAATGACATAACTGGGATCAATTCCATCAAAACCTTATTGGATGACAAGTTCAGCATCAAAGACTTAGGTGATCTTAA GTATTTCCTTGGTCTTGAAGTGGCTAGGTCTAAGCAAGGTATTGCATTGTACCAAAGGAAGTATGCATTGGACCTTCTTG CTGATACAGGCTTGACAGCTACTAAGCCAGTAACCAGCCCTATGGATTCCACAGTTAAAATACATAAGGGTTCTGGGGAG AGACTACAAGATGTTAGCAGTTACAGAAGATTAATTGGTAGATTACTATATCTAACCAATACTAGAGCTGATATTACATT TGTTGTCCATCATCTTAGTCAGTTCCTAGATTGTGCTACTGATGTTCATTATGAAGCAGCCCTAAGGATACTGAAATATG TCAAAGCAGCACCAGCAAATGGACTCTTTTTCCCTTCTACTTCTTTCATCACACTGAAAGGCTACAGTGATTCTGATTGG GGTGCTTGCATAGATACAAGGAGATCTGTTACTGGTTATTGTTTCTTCTTAGGCAACTCATTAATTTCCTGGAGAAGTAA GAAACAAACCACAGTTTCCAGGTCTTCCAGTGAGGCTGAGTATAGAGCTCTATCACAATCTAGTTGTGAAGCTTTATGGT TAACTTACCTACTCAATGATTTGCATCCAAACTCCTTGCAGCCAGTGAGCATCTTCTGTGACAATCAATCTGCTCTACAG ATTGCCAATAATCCAGTTAATCATGAAAGAACCAAATACATTGAAATGGATGTTCATTTCATTAGAGATAAGCTTCAGGA AGGATCCATACACTTGCTACCAGTTGGTTCAAAGGAACAAACAACTGATATATTCACAAAACCTCTATCTTGTGGTCCTT TTCAGCACTTGATCTCCAAGCTAGGAATGTTAGATATCCATTCTAGCTTGAGGGGGGTATTGAGGAAGTTAGTAGTTAGT TAGAAGTAATATCAAGATTAGTTAGAGTCAGTTACACTTTCTGTTTTTAATTAAACTTGTGACTGATTGAGGCACTATAT AATGTCCTCTATTGTACAGAATAATCAGTTTTTTCATTGAATGAATTACGCAATTATATTTTCCACATTAATCACCCTGA GTTTTTTTTTTTTTTTT
CDS sequence (LotjaGi3g1v0277800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAATCCTCCGATTGATGTTCACAGTCCTTACTATCTTCATCCTAATGAGAATCCCGGTGCGAATTTGGTGACTGC ATCTCTGGTTGGCAATAACTACCATTCTTGGTCTCAGGCCATGTGGCGTTCTTTGAAGACCAAGAACAAACATGGGTTTG TTGATGGTTCCCTTCCGAAACCTGCAGCTGATGATCCTTTATTTGGTGTATGGGATCGCTGCAACACTTTGGTGATTTCT TGGCTTACACAAGCAATGGATCCGGTTATAGCTCAAAACATTTTGTGGATGGATCTTGCTTCTGAGATCTGGGCAGATTT GAAGTCCAGATATTATCAAGGTGATTTGTTCAGAATTTCAGATCTTCAAGAAGAGTTGTATTCTCTTAAACAAGGTGACA TGCCTATCACTACTTACTTTACTCGATTGAAGAGTTTATGGCAAGAATTAGAAGCTTTTAGGCCAATTCCTTCTTGTACC TGTGCTGTTTCTTGTACTTGTGATTTGATTCCAATTGTTAAAAGCTATAGAGACAGTGATTATGTGATAAGATTTCTCAA GGGTTTGCATGAGAATTATGCTGCTGTGAGGTCCAGTATCATGTTAATGAATCCTTTGCCCCCAATTTCCAAGGTTTTTT CCTTGCTAGTCCAGCAAGAGAGACAGTTTAATTCAGTCAATCTTGAAGAGAGTAAAATCTTAGCCTATCATTCAGATGCT GGAAAAAAGTATGCTCATAATGCAGATCATGATAGTCATGAACAAGATAGATCCAAAAGAACTCCATATCCTTCAAAGGG AAAAGGAAATAGTGGTCGATATGCTGCAAAAGAGTGTAGTTTCTGTCTCAGGTCTGGTCATACAGTTGATTACTGTTACA AGAAATATGGGTACCCTCCTAATTTCAAGAAGAATGGGAGTTTTAATTTTGTTACTCAAGAAGATGGTGATGATTTTGAT GCCAAATCGGCTTGTTCTTTTAAGCCTGAAGTCAATCATTCAACACCGGGGTTTACTGCTGAGCAATAG
Protein sequence (LotjaGi3g1v0277800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVNPPIDVHSPYYLHPNENPGANLVTASLVGNNYHSWSQAMWRSLKTKNKHGFVDGSLPKPAADDPLFGVWDRCNTLVIS WLTQAMDPVIAQNILWMDLASEIWADLKSRYYQGDLFRISDLQEELYSLKQGDMPITTYFTRLKSLWQELEAFRPIPSCT CAVSCTCDLIPIVKSYRDSDYVIRFLKGLHENYAAVRSSIMLMNPLPPISKVFSLLVQQERQFNSVNLEESKILAYHSDA GKKYAHNADHDSHEQDRSKRTPYPSKGKGNSGRYAAKECSFCLRSGHTVDYCYKKYGYPPNFKKNGSFNFVTQEDGDDFD AKSACSFKPEVNHSTPGFTAEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 15 | 62 | 48 | 5.9E-17 | ||
| PANTHER | 47 | 312 | 266 | 2.4E-77 | – | |
| PANTHER | 47 | 312 | 266 | 2.4E-77 | – | |
| Pfam | 71 | 222 | 152 | 1.0E-8 | – | |
| MobiDBLite | 245 | 263 | 19 | - | – | |
| MobiDBLite | 245 | 273 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0277800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…