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LotjaGi3g1v0277900.1

Overview

Field Value
Gene ID LotjaGi3g1v0277900
Transcript ID LotjaGi3g1v0277900.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:55135466..55136656) extracted from Lotus japonicus Gifu genome v1.2.

CATCTCAACCGTACATACAAACCAATCGACCGTCCCTAACACATTCCGAAACCCATCACACGGATCAACACAATTCCCCA ATCTCCCTTCATCACTACCTATAAAACAAATCCACATCAAACCAAATTTCCATCCCTCAAAATCTCAAATCACCCTCTCA TCTCAGTTCATCTCCAATCTCCATCTTCTCACCGGTAAATTGAAATCAATTCTCAACTGTAAAATCTCGCTGCATTGATA TAGTTTTTTTTTTTCTGTTTCTGAAAATTTCTATCTGGTTGTGATTTACTGTAGATTTCAGTTCGATTTTCTGAGTGACA GCATGTCTGGGCGTGGAAAAGGAGGCAAGGGATTGGGAAAGGGAGGAGCGAAACGACACCGTAAGGTTCTCCGCGACAAC ATTCAGGGAATCACGAAGCCAGCGATTCGGCGATTGGCTCGCAGGGGTGGCGTGAAGCGTATCAGTGGCTTGATCTATGA GGAGACTCGTGGTGTTCTCAAGATCTTTCTCGAGAATGTGATTCGTGATGCTGTTACCTACACTGAGCATGCTAGGAGGA AGACTGTTACTGCCATGGATGTGGTGTATGCTCTCAAGAGACAGGGAAGGACCCTTTACGGATTTGGGGGTTAGGGTTTT GGTATTCTAGTTTCATATGTTACTGTTTGTCTTTGATTGTATGTTGAAAAAAGCTGGCAAGGATTGTGTTTATTTGGTTT GATGGATTGTTGGTGGTGTCTTTAGGTAAAGAAAGAAATTAGCAGCAATTTGCAATAGGTAGTTGAGTTCTTGGTTATCT GCAATGTTACATCTCGGTTGCAATGTATAATTACTTATGTTTTGAGTTCACTAAACTACAAATCTAACATTAACTCAAAT AACCATGTTTTAAAATTAATTCATATTACATTTAGGATAATATTGTAGGTATTTACACCGGATGCATCCTCAATGTGATG ACGATGGGGATGATTATGCCAATGATATAGTTTTTTGAAGAAAGAATGAACTTTCATTAATACGGGAAATCAGAACAAGC TACATCCATGATGTTTAGAGTGACATGCCCCATCCAAACTGTGTTCTAAAACAATGAGAAACTGAGACAAACTCAAAATC AGAGATCAAGCTACAGCAGTCATCAATGATAAGTTGGAGATCTGGGGAAAGCTGTCTAGCCTGAAAACCAC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0277900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGGGCGTGGAAAAGGAGGCAAGGGATTGGGAAAGGGAGGAGCGAAACGACACCGTAAGGTTCTCCGCGACAACAT TCAGGGAATCACGAAGCCAGCGATTCGGCGATTGGCTCGCAGGGGTGGCGTGAAGCGTATCAGTGGCTTGATCTATGAGG AGACTCGTGGTGTTCTCAAGATCTTTCTCGAGAATGTGATTCGTGATGCTGTTACCTACACTGAGCATGCTAGGAGGAAG ACTGTTACTGCCATGGATGTGGTGTATGCTCTCAAGAGACAGGGAAGGACCCTTTACGGATTTGGGGGTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0277900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK TVTAMDVVYALKRQGRTLYGFGG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10484
1 103 103 1.2E-74 –
PANTHER
PTHR10484:SF171
1 103 103 1.2E-74 –
MobiDBLite
mobidb-lite
1 20 20 - –
Gene3D
G3DSA:1.10.20.10
2 103 102 1.7E-60
IPR009072
SUPERFAMILY
SSF47113
3 102 100 4.04E-32
IPR009072
PRINTS
PR00623
5 16 12 2.2E-63
IPR001951
ProSitePatterns
PS00047
15 19 5 -
IPR019809
SMART
SM00417
16 90 75 2.0E-29
IPR001951
CDD
cd00076
18 101 84 7.44768E-43
IPR001951
PRINTS
PR00623
20 39 20 2.2E-63
IPR001951
Pfam
PF15511
36 96 61 1.8E-8
IPR035425
PRINTS
PR00623
40 60 21 2.2E-63
IPR001951
PRINTS
PR00623
62 76 15 2.2E-63
IPR001951
PRINTS
PR00623
77 89 13 2.2E-63
IPR001951
PRINTS
PR00623
89 100 12 2.2E-63
IPR001951

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0277900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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