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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0278500 |
| Transcript ID | LotjaGi3g1v0278500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat-containing protein; TAIR: AT1G07710.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620; TrEMBL-Plants: tr|A0A1J7IB00|A0A1J7IB00_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0278500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:55234641..55237913) extracted from Lotus japonicus Gifu genome v1.2.
GAGATTTTTAGGGAGGTGAATCCAATATGGCTGCGCCTGTAAGCACCCCTAGGAAAAAAATGACCAAACAATTGACAGGA AAAAGGGATGATACCCCTTTGCATTCTGCAGCAAGAGCAGGGAATCTGGCTGTGCTGAAGGATACCCTTACCGGTATCGA AGAGGATGAACTTCATGAGTTATTGGCCAGGCAGAATCAAGATGGAGAAACAGCGCTTTATGTGGCTGCTGAATATGGTT ATGTTGATGTAGTCAGGGAGATGATTCAGTATTATGATCTTGCTGATGCTGGGATCAAAGCAAGGAATGGTTTTGATGCA TTTCACATTGCTGCCAAACAAGGGGATTTAGGTATGTCTTCAATGTAGTTTTCGTATATTTGTTTTCTTTGTAGTTTGCA CCATATGTGAAATGTGTATCAACTTCTTTTTTCTGGGAATCAATTCTGTCCCCCAGAAGCTACTCACATAGTGCAAGTTT GAATCAGGGTCTAATATTGATTATGAATTTATGATAAATTTGAGTCGAAAGTGATGTGATGTGATTTATGTAGGGATACT CTCACGATTAAAGTGGGTTTTGTAGGGTAATATTGTGAAATTCAGTTGTGAAATCTTAGAATTGATTATGTTCAACATAG AATCTACTCTCTCTAGCTTCCAACAAAATTGATTTTGGAGCTGAAACCAATTCTCCAAAATGACTCTCAACATCTATTTT ATAATCCAAAATTGATTCTAATCTATAATGTCAATTCTCCAAAATGGAACCCAAACATAAATATATCAGTTTTACTGAAG AATTGATTTTGATTTTAGAATCAGTAAAAGTGTTTCCAAACATGCACTCAGATTCTGTTTTCCCTATTGCAGATTTACTG AAGATCCTTATGGAGGCTCATCCTGAATTGTCAATGACTGTGGACCCATCCAACACCACAGCTTTGCACACTGCTGCAAC ACAAGGGCATACTGAGATAGTGAAGTTCCTTTTGGAAGCAGGAAGTAGCCTTGCAACCATTGCAAGAAGTAATGGGAAAA CAGCTCTGCATTCTGCTGCGAGAAATGGGCATGTGGAGGTTGTGAAAGCGCTTCTTGAGAAGGAGCCTGGAGTTGCAACA CGGACCGATAAGAAGGGCCAGACAGCGCTTCACATGGCAGTGAAGGGACAGAATCTTGAGGTGGTGGAGGAATTGATAAA AGCAGATCCCTCGACAGTAAACATGGTAGATAATAAGGGAAACACAGCATTGCATATAGCAACCAGGAAAGCCAGGACCC AGGTACATTGAAATTTGCTCATAACTTCATATATAGTGTTGTGACTGTAAGTGAACTGCGATTTAGGATCACCATCCGTA TGTTCTTTTCTATGGTTTGTCATTAAAAACTATTACCCTCAGCTTTGAGTACTCATAGTTTTGACAGTATTCTCCAGTAA TGGTTCTGCTATCAGCTTGAATGATTTTTCTAGAAACAAGCATTTCAATTATTACAAATTTAGTACAAGTATGTTTTGTT TGTTTTTGTCATAAACGTGGATGTGAAAAGAATCCAGGTTTGGCTCACATTTGGATTGATCTAGTAAATGATTGGTCCCG ACCTGTTTATTGTCCTCCAGAACATAAAGTTTTGATGTGTGGACATCTTAGAACAAAGTAAGAGCCAGTTTGTACATTAC TTGAGATTTGAATAATTTTCCATCCCCAGCAGTGATAAAAACATGGGTGCCAAATCATGTAATCAGCCAGGCAATATTTT ATTTTTGATATTAATATACATCATCCAAGAACTGAAGTTGGTTAGTTGAATTTAAGTTCTAGTTCTCATGGTAGTAGCTT TTTGATGCACTATTCTGAAGGTGTCTTGTTAGCAGATCATTTATGCAACGCCTAGATCATAATTAATTATTAAGCAAGCA ACTAAAACTTTTAGGTTAAGTATATAATAGTCTTAAAAGGTTACTGTTGAATGTTGATAGATAATACTTAATAGTGATAT TCCTCATTTATAAAACCATCCTTTTCATATAAGCAATAGCAAAAACCCCTTGATGATATGAGAATGAGTCACCTCATTCT ATTTGTCCAGTCCAAACTATCTAAGTGCATGTCTGTTTTCACGATTTGCACAGAATCTGAGGCATGTTTACTCATAAAGT AACACTTGTAGCTTTTAAGCAGAAGATATTTTAGAACATCTATCTGTAGAACCAAACATACTATAAAAGTTGCTTCAACT CAAATAAACTGCTGGCTAGTATATGGCAATGCTCCTGATATGTGAAAATCTGTTTGAAAAATTATTTCAATATCTGTTTT TGTGTCCATTTGTTGTGCCCTGTGATATGTCGGATTAGGGGGAGAGGCTAAAATATCTTAACTGATCACTGCAGATTGCA AAGATGCTTCTCGAACATAAGGAAACAAATACAAAAGCTGTTAATAGATCTGGTGAAACTGCTGTAGACACCGCTGAGAA AATGGGGAACCAAGATGTCAAAGCCATTTTGTTGGAACACGGTGTTCAGAGTGCCAAAGCCATAAAGCCACAAGGTACTT CTACAGCCCGTGAATTGAAACAAACCGTTAGTGACATAAAGCACGAGGTCCATTACCAGTTGGAACACACGCGCCAAACC AGAAAACGTGTTCAAGGAATCGCGAAGCGCATCAACAAGATGCACACAGAAGGGCTCAACAATGCAATCAACTCCACAAC TGTGGTAGCAGTCCTAATTGCCACTGTTGCCTTTGCTGCTATTTTCACAGTCCCTGGCCAATTTGTTGATGACCCAAAAA ACATTCCTCCTGGGATGTCTCTTGGTGAAGCAAACATAGCCCCTCAAGCTCCGTTTATCATTTTCTTCATCTTTGATTCG ATCGCGCTCTTCATTTCGCTGGCAGTGGTGGTGGTGCAGACCTCGGTCGTGGTTATTGAAAGCAAAGCAAAGAAGCAGAT GATGGCCATCATCAACAAGCTAATGTGGCTGGCTTGTGTGCTTGTTTCAGTGGCCTTCTTGGCACTGTCTTTTGTGGTGG TAGGAAAGGAAGAGAAGTGGCTGGCAATTGGAGTTACCATTATAGGGACAACCATAATGGCAACCACGTTGGGAACCATG TGTTACTGGGTCATTAGGCATCGCATTGAGGCCTCAAATTTGAGGAACATTCGGAAATCTTCATTGGAAAGCAAGTCAAG GTCTTTTTCACAGCCTGCTCTTTCAGATTCAGAGCTACTTAACAATGAGTTTAAGAAAATGTATGCAATTTAG
CDS sequence (LotjaGi3g1v0278500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCGCCTGTAAGCACCCCTAGGAAAAAAATGACCAAACAATTGACAGGAAAAAGGGATGATACCCCTTTGCATTC TGCAGCAAGAGCAGGGAATCTGGCTGTGCTGAAGGATACCCTTACCGGTATCGAAGAGGATGAACTTCATGAGTTATTGG CCAGGCAGAATCAAGATGGAGAAACAGCGCTTTATGTGGCTGCTGAATATGGTTATGTTGATGTAGTCAGGGAGATGATT CAGTATTATGATCTTGCTGATGCTGGGATCAAAGCAAGGAATGGTTTTGATGCATTTCACATTGCTGCCAAACAAGGGGA TTTAGATTTACTGAAGATCCTTATGGAGGCTCATCCTGAATTGTCAATGACTGTGGACCCATCCAACACCACAGCTTTGC ACACTGCTGCAACACAAGGGCATACTGAGATAGTGAAGTTCCTTTTGGAAGCAGGAAGTAGCCTTGCAACCATTGCAAGA AGTAATGGGAAAACAGCTCTGCATTCTGCTGCGAGAAATGGGCATGTGGAGGTTGTGAAAGCGCTTCTTGAGAAGGAGCC TGGAGTTGCAACACGGACCGATAAGAAGGGCCAGACAGCGCTTCACATGGCAGTGAAGGGACAGAATCTTGAGGTGGTGG AGGAATTGATAAAAGCAGATCCCTCGACAGTAAACATGGTAGATAATAAGGGAAACACAGCTGTTAATAGATCTGGTGAA ACTGCTGTAGACACCGCTGAGAAAATGGGGAACCAAGATGTCAAAGCCATTTTGTTGGAACACGGTGTTCAGAGTGCCAA AGCCATAAAGCCACAAGGTACTTCTACAGCCCGTGAATTGAAACAAACCGTTAGTGACATAAAGCACGAGGTCCATTACC AGTTGGAACACACGCGCCAAACCAGAAAACGTGTTCAAGGAATCGCGAAGCGCATCAACAAGATGCACACAGAAGGGCTC AACAATGCAATCAACTCCACAACTGTGGTAGCAGTCCTAATTGCCACTGTTGCCTTTGCTGCTATTTTCACAGTCCCTGG CCAATTTGTTGATGACCCAAAAAACATTCCTCCTGGGATGTCTCTTGGTGAAGCAAACATAGCCCCTCAAGCTCCGTTTA TCATTTTCTTCATCTTTGATTCGATCGCGCTCTTCATTTCGCTGGCAGTGGTGGTGGTGCAGACCTCGGTCGTGGTTATT GAAAGCAAAGCAAAGAAGCAGATGATGGCCATCATCAACAAGCTAATGTGGCTGGCTTGTGTGCTTGTTTCAGTGGCCTT CTTGGCACTGTCTTTTGTGGTGGTAGGAAAGGAAGAGAAGTGGCTGGCAATTGGAGTTACCATTATAGGGACAACCATAA TGGCAACCACGTTGGGAACCATGTGTTACTGGGTCATTAGGCATCGCATTGAGGCCTCAAATTTGAGGAACATTCGGAAA TCTTCATTGGAAAGCAAGTCAAGGTCTTTTTCACAGCCTGCTCTTTCAGATTCAGAGCTACTTAACAATGAGTTTAAGAA AATGTATGCAATTTAG
Protein sequence (LotjaGi3g1v0278500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPVSTPRKKMTKQLTGKRDDTPLHSAARAGNLAVLKDTLTGIEEDELHELLARQNQDGETALYVAAEYGYVDVVREMI QYYDLADAGIKARNGFDAFHIAAKQGDLDLLKILMEAHPELSMTVDPSNTTALHTAATQGHTEIVKFLLEAGSSLATIAR SNGKTALHSAARNGHVEVVKALLEKEPGVATRTDKKGQTALHMAVKGQNLEVVEELIKADPSTVNMVDNKGNTAVNRSGE TAVDTAEKMGNQDVKAILLEHGVQSAKAIKPQGTSTARELKQTVSDIKHEVHYQLEHTRQTRKRVQGIAKRINKMHTEGL NNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPKNIPPGMSLGEANIAPQAPFIIFFIFDSIALFISLAVVVVQTSVVVI ESKAKKQMMAIINKLMWLACVLVSVAFLALSFVVVGKEEKWLAIGVTIIGTTIMATTLGTMCYWVIRHRIEASNLRNIRK SSLESKSRSFSQPALSDSELLNNEFKKMYAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 328 | 328 | - | – | |
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 2 | 235 | 234 | 0.0 | – | |
| PANTHER | 2 | 235 | 234 | 0.0 | – | |
| Gene3D | 13 | 123 | 111 | 7.6E-19 | ||
| Pfam | 14 | 82 | 69 | 1.1E-7 | ||
| SMART | 20 | 51 | 32 | 730.0 | ||
| ProSiteProfiles | 20 | 264 | 245 | 46.58 | ||
| SUPERFAMILY | 24 | 263 | 240 | 2.75E-48 | ||
| SMART | 59 | 88 | 30 | 0.017 | ||
| ProSiteProfiles | 59 | 81 | 23 | 8.736 | ||
| Pfam | 86 | 155 | 70 | 5.8E-12 | ||
| ProSiteProfiles | 94 | 126 | 33 | 9.431 | ||
| SMART | 94 | 123 | 30 | 0.015 | ||
| Gene3D | 124 | 306 | 183 | 1.5E-33 | ||
| SMART | 128 | 157 | 30 | 0.018 | ||
| ProSiteProfiles | 128 | 160 | 33 | 12.182 | ||
| SMART | 162 | 191 | 30 | 7.3E-5 | ||
| Pfam | 162 | 222 | 61 | 3.6E-14 | ||
| ProSiteProfiles | 162 | 194 | 33 | 12.289 | ||
| ProSiteProfiles | 196 | 218 | 23 | 9.377 | ||
| SMART | 196 | 226 | 31 | 1.3E-4 | ||
| PANTHER | 234 | 511 | 278 | 0.0 | – | |
| PANTHER | 234 | 511 | 278 | 0.0 | – | |
| SMART | 238 | 268 | 31 | 3900.0 | ||
| Pfam | 318 | 434 | 117 | 8.3E-28 | ||
| TMHMM | 323 | 345 | 23 | - | – | |
| Phobius | 329 | 350 | 22 | - | – | |
| Phobius | 351 | 369 | 19 | - | – | |
| Phobius | 370 | 394 | 25 | - | – | |
| TMHMM | 372 | 394 | 23 | - | – | |
| Phobius | 395 | 414 | 20 | - | – | |
| Phobius | 415 | 435 | 21 | - | – | |
| TMHMM | 415 | 434 | 20 | - | – | |
| Phobius | 436 | 440 | 5 | - | – | |
| Phobius | 441 | 466 | 26 | - | – | |
| TMHMM | 444 | 466 | 23 | - | – | |
| Phobius | 467 | 511 | 45 | - | – | |
| Coils | 511 | 511 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0278500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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