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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0280900 |
| Transcript ID | LotjaGi3g1v0280900.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein Rab-8A; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|Q40219|Q40219_LOTJA RAB8E; Found in the gene: LotjaGi3g1v0280900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:56201863..56206749) extracted from Lotus japonicus Gifu genome v1.2.
TTATTATTATTATTATCATCAGTTGTTGTTGGAAATTCGATAGAAACCTTTGTTGTTGTTTCCTTTTGTTGTCTCTTGAA TCCTGTTGCTGTTTCTCAATAACAGTGCGCACCTGTGGTAGGAAGAGGCTGAAAGAGTGCGCACTTTAGCGACCCACCAC CATAGCCGAAAAAGCTTAGAAGAACTTCAAGGTTTTGTATCTGGTTTTCTAGTGGAGATCCCTTTTCTCTCCCCCATTTC CCTTTCCGTTTCAGATCTGGTTTTCATTTTCTGAATTAACGTGAAATTGATTTCATTTCTTTGTTTTTTCAATAGGAACT TCCCTTCATCGTTTGATTCAAAGTTCATGGCTGCTCCACCGGCTAGGGCTCGTGCGGATTACGATTACCTCATAAAGCTT CTCTTGATTGGCGACAGTGGTAAGTCTCTCACAATGCTGTGGATGTTCTGTTTAATTTTAGGTCAACTTTTTGATTTTTC CCCTTACAATTGGAAGAGTTTTCTTTTGGTAATTTTTGTTCTGATTTTATCTCTAATGTATCTTTCATGACCTAGTTTGA GGCAAATGTACTTAATTTTAGACTTGAATCTTTTCATGACCTAGTTTGAGGGAGCAATTGAATAATTGTTTCTGCTACTC CTTAATACAATTAAGGTGCCAAAGGGTTGAATTGCGAATTCCTTTTGATCCTATTCCGGGCAAGTCTTTTTGTGCCATTG TGTAAATTTGAGCCTTTCTGTTCTCCTTGATACAGTGATGTGTGATGTCACGCATCAAATTGGGCCATGACCAATCTGTA AAGCAAGGACAGAGATAACGACACCGGATGATGCGGACAAACCCGCTCAAACAATGTGTAAAACATGGGAAATTGGGACA CATCATGCCCTCGTACATACACATATTAACTCCATGAGAGGAGTTAGTGTCTATTTGAATACTAGTTGAGCATAAAATGG GAAAACTTTTATCCTATTTCATAAGAAGAGTTACGTTTATGTTTTGTGTTGAAGTGCTTGTGAAAGTTTGTTAGTATCAG TGCAAACTGATAATGAAACACACCTTTAATATCAACCATATGGTTTGATCAGAATCATTTCTCTCACTTACTTAGTTGAT ACCTCTCATGAATATATAAAAGTCTGAAAATTATAAAGAAAACAAAATGGAAGTTTTTCAATGCAAGCAATGTACTTCAA GTGTCAAGCCACAGTTGGAATGTCAGTTAAGTGTTTGAGAGGTGTCCCAGCTGTGTCTAACACATGTCCAAGCCTTTAGA AAATGATTTTTTAATAAAGGACATTATGAGGAGTGTCTTGCACATGTCATATTAGTGTTGTATGGCTTTGAAGTGTGTTC ACTACTCTGACACATTAAGAAGAAGAAATGTCCGTACCTCATAACTGGTAGCTTCTGCAAAATGCTTGTAAGCTGAAGCT CTAATTTCTTGAATTTTGCTCTAGAGAAAAGAAGAAGTATGTCTTCAGTTGGTGTTTTACACGAACTGTTTTCCCATGCC TGATTCTTCACTCCAATATGATATATGTCATAGTTTCTTCTACCCTTTATGTTATTTTTTATTACAGGATGTGTTGAGTA GAAGGTTTACTATAGACTACATAGAAATGAAAAATATTGTGGCCGTAGAAATTGCAAGAGTATAAATAGTAATTTGGCTT ATAAAGTCCTTAATTTGCACAAACCTGATCTGATACTCTTGTTTGCAGGTGTTGGAAAGAGTTGTCTTCTTCTGCGTTTC TCCGATGGTTCTTTCACAACTAGTTTCATTACAACCATAGGGTGAGTTTTTTACAATTTAGTTGTAGAAGTGTGGAGTCT TGTATGCGTGAAGTTTCCCTAAAATCTCAGAGTCTATCTTCCTGATGCAGCATTGACTTTAAGATAAGGACCATTGAGCT GGATGGAAAGCGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACTGGTAAGATAT ACGATCCATACACGTCCTTGTATTATCTTTTACTGTTTGTATGTGTCACGTGGAAAGACATTGCTTTCCAATGGCATTTG TGACACTCAGTGATTCAGGATGAAAAGGTTGAGGGAAAAAGAGAAACGAATATGAAGAAGAATAAAAATGATAAAAAGAT TATAGGGAGAAGGAAAATAAAACAGATAGATAAAGTAAGCTCTGAGAAGTGAGAAATACCATAATGGTTATTCAATGTAA AAACTGCTGCGGCAAACTATAATGGGTAGTTCACAATTCAAATTCAAAGTTATTTCTAATTTGTAAATCCTAGGATTAAG ATAAAAGTCAAGTCGCCCGAATTTCAGTCCTTTGCCTAAGTCTAAATAAGTCTATACTCCAATGCTTCAATTGCAAACCT TGCAGAATTTATAGCAAAGAAGTTTCTGGGAGCATCTTCCGTGTGGACTTTTTTCAAAACTGACTGATCAGTTGTTAATG TAAAGATCACTAGTGAACCTCTTTTTGGATTATGTTAAATGTAATTTCATTTGTGGTACCTGCTATTTTGGTGTTTTGAT GTGTCACAATTAAAGTCCATGTATCCAGTTGATTGGTACTGTTTTATTGATGCTACTCTAGATTTCTTTTATTCTCCACT GGTGTTAAAATCATGTTACCAACGAGAATATTTGTGATGTATTTTATTGTGGCAATCTTTACTAAATTCCATATCTTTAT TTTCAGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTTTATGATGTTACAGACGAATCTTCATTCAACAGTAAAGTT TCCACTTGTTGCTTCGGTTTAAAATTTGGAGATATGTGCTTTTCTCTTCAAAATCTTTCTCATTCGGAATATTTATCCAG CTTGTTCTAATTTCAGATATTAAGAATTGGATTCATAACATTGAGCAACATGCCTCAGACAATGTTAACAAGATACTGGT GGGGAACAAAGCTGACATGGATGAAAGCAAAAGGGTATGCAAACATATCTAGGACCTTTCTCTTTGTGAGTGAGTTTATA AGAACAAATATCTAGGACCCTCAACACAGCTGTGTTATGCATATCTCAGTCAAAGTAGCAAAAGAAATGTGCTATTATTG TCATCTAATGTACTTTCTTTATCGTTGTTATTATGCTAGAACAAGATAGCCTTTTTTGCACCATTGAGCAGCATGTTTAT TTAAGATTCAACACAAAAATGATCCGACACTTGCACATTTACCTATGTGTTTTCCATGCCACTTTTAGCTGAAGCTAGTT TTTCTCCTATTACTCAAGTTTTCAGCTCACCAACCTGAATTCTTAACAAACATGCTTCATGATGTTGGAAAAACCATGTC AAATTGTTAGTGAATGAAAACCTTTCATTTGAGTTAAAGAGGGGAATGGGTTAAGAGGATTGGGTTCTTGATTGATGCCA TTCATGGAATTAGTTACATCTGGGGTCCTCTCTTTCTCAGATGCATGTCAAATTATTTCTGGAATAATAGATAAACCTTG ACCTTTCTTTCTAGGCTGTGCCTACCTCCAAGGGCCAAGCACTTGCCGATGAGTATGGAATCAAATTCTTTGAAACAGTA AGTGATTTATAGCTGAGAATGTAGCAACTTCCTGAAGTTTCTTATTATCTTTGCAAACTGAAAAGATTTCTGTTGCAGAG TGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCGATTGCAAGAGATATAAAACAAAGGCTCGCTGACACAGACT CTTCTAAGACAGAGGTATTTGGACTTCCTCTTCCTTTAATTCATGGATAGGTTTATACTGTTAATCGCTTTCTGTCCATC AAATTCAGTGTCTCATGATATTTTCATTGCAGCCGACAGGAATTAAAATTAACCCACAAGATAAGGGATCTGCGGGAGAG GCTGCACAAAAGTCAGCTTGCTGTGGTTGAGGAGGCAACATCATTGTCCAAGAACAAGACAAATGGAGGAAAATACTTGT ATGATGACAAATTGATGATGACTTTTCTGTGTGGTTTTACCTTGTCATTCTTTCATAGTTTCTCACTTTTCAGGAGGTTA TATATTAATGCAAAGGTAGATGTGATTGTATCATTGACCCTTATGTTGTTTGTTTGAGACATAATCCATTGATCTGATTT TTTGAAGGGTTAATTGCATTGAGATTCTTTAAAATTTAATAAAATTATATTGATCTCATTCTTAGTATAAGTTTGTTTTT AAACTTTTGAATAATCAAACCTGTTCTCTCTTGCTCTTTGACAAATATGTTATGTGAACAACATTTCTTACTAGTGAAAA TAATGTATGCTTTATGTCAAAAGTAGAAGGGGGAGGTTACTAGAATTTTATCAGCTTAAATTAGTCTGTAAGTCGTTATA TTTTCATTAAATTTTCAATTCAATCCCTACAGTTTAGAGACTTTTAATCAATTCAATCCCTACAATTCAATCCCCCACAG CTCATATGAGAATGTTTGGGAGAACCTATGTAAATAGTTTTGTCTATCTATAAGCTGTTTTGAGCTTATTTACATAAGCT GTTTAGATTAACTTATGAAAATAAGCTTATGCTTACTTATAGCATATTTTCAGGCTCTCAGCTTATGTCAATAACTTTCC CAAAATAGCTTATAGATAAGCTTGTATGACAAAAATATATAATGACTGTTTCTTAAAGGCTAAAATAACCATGGCTACAT CTTTCACTCCCCTTCCATTTTCTCTTAGGATAAAATGGATTAACTCATCAATCTGGTATAGAATAGAGCATGTGAAAGCT GGTATAGAAAAGTTATGGTATAATTTCAAAATTCAAAATACCTTGTTTCCACCATTATGCTCATTAACTCATCACATGTA TCATGCA
CDS sequence (LotjaGi3g1v0280900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTCCACCGGCTAGGGCTCGTGCGGATTACGATTACCTCATAAAGCTTCTCTTGATTGGCGACAGTGGTGTTGG AAAGAGTTGTCTTCTTCTGCGTTTCTCCGATGGTTCTTTCACAACTAGTTTCATTACAACCATAGGCATTGACTTTAAGA TAAGGACCATTGAGCTGGATGGAAAGCGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATT ACAACTGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTTTATGATGTTACAGACGAATCTTCATTCAACAATATTAA GAATTGGATTCATAACATTGAGCAACATGCCTCAGACAATGTTAACAAGATACTGGTGGGGAACAAAGCTGACATGGATG AAAGCAAAAGGGCTGTGCCTACCTCCAAGGGCCAAGCACTTGCCGATGAGTATGGAATCAAATTCTTTGAAACAAGTGCA AAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCGATTGCAAGAGATATAAAACAAAGGCTCGCTGACACAGACTCTTC TAAGACAGAGCCGACAGGAATTAAAATTAACCCACAAGATAAGGGATCTGCGGGAGAGGCTGCACAAAAGTCAGCTTGCT GTGGTTGA
Protein sequence (LotjaGi3g1v0280900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI TTAYYRGAMGILLVYDVTDESSFNNIKNWIHNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA KTNLNVEEVFFSIARDIKQRLADTDSSKTEPTGIKINPQDKGSAGEAAQKSACCG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 181 | 181 | 0.0031 | – | |
| PANTHER | 6 | 210 | 205 | 3.6E-125 | – | |
| PANTHER | 6 | 210 | 205 | 3.6E-125 | – | |
| Gene3D | 9 | 214 | 206 | 3.0E-73 | – | |
| SUPERFAMILY | 11 | 186 | 176 | 1.9E-64 | ||
| ProSiteProfiles | 11 | 214 | 204 | 38.499 | – | |
| CDD | 13 | 180 | 168 | 2.70401E-120 | – | |
| TIGRFAM | 14 | 170 | 157 | 9.4E-32 | ||
| PRINTS | 16 | 37 | 22 | 7.8E-47 | – | |
| SMART | 16 | 180 | 165 | 1.4E-107 | – | |
| Pfam | 17 | 178 | 162 | 2.0E-66 | ||
| SMART | 17 | 180 | 164 | 8.3E-36 | – | |
| SMART | 18 | 180 | 163 | 3.6E-14 | – | |
| SMART | 21 | 215 | 195 | 7.6E-8 | – | |
| PRINTS | 39 | 55 | 17 | 7.8E-47 | – | |
| PRINTS | 57 | 79 | 23 | 7.8E-47 | – | |
| PRINTS | 119 | 132 | 14 | 7.8E-47 | – | |
| PRINTS | 155 | 177 | 23 | 7.8E-47 | – | |
| MobiDBLite | 182 | 215 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0280900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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