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LotjaGi3g1v0285500.2

Overview

Field Value
Gene ID LotjaGi3g1v0285500
Transcript ID LotjaGi3g1v0285500.2
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:57700365..57705909) extracted from Lotus japonicus Gifu genome v1.2.

ATGCTGTCTGAACTGGGTAGGAGGCCGGTGCTGGGTGGGAACGAGGGTTCTTTTGGTGATGAATTGGATAAGGAGATAGG GATGTTGCTTCGTGAGCAGCGGCGGCAGGATGTTGATGATCACGAGCGCGAGCTCAATCGGTATAGGAGTGGATCAGCGC CTCCAACTGTGGAGGGTTCTCTGAATGCAGTTGGAGGGTTGTTTGGAGGCGGCGGCGGCGGCGGTCTCGCTGGCCCATTT TCTGAATTTCCTGGGGCTAACCATGAGAATGATTTTGCGTCTGAGGAAGAGCTTAGGTCTGATCCGGCTTATCTTCAATA CTATTACTCCAATGTGAATTTGAATCCTCGACTTCCGCCTCCTTTGCTATCAAAGGAGGATTGGAGGTCTGCACAGAGAG CTTCAGTTCTTGGTGGAATTGGAGATAGGAGAAAAGTGAACAGGGTTGATGACAGTGGTGCTAGATCATTGTTTGCAACC CCTCCGGGGTTTAACTCGAGGAAGTCAGAGAGTGAGGCGGAGAACGAGAAAATGAGAGGTTCTGCTTCTGCAGAGTGGGG TGGTGATGGGCTCATTGGCTTGCCAGGCCTAGGTCTTGGGAGTAAACAAAAGAGCCTTGCAGAAATTTTCCAGGTAGCTT GCTTCTTTCATTGTGTTCTATTCTTGGCACCCTCACTCTTTAGCATCTATTCATTTTTGTGTTTTCACTTTTATCTTTGA CACATCATACGATATTGGTTTCTTAGGTTCAACATGTGGTTCATTGATGCATTTATATCTTTTTTTTAATGTTTGAACTT GTTAAATCTTGTGGGAAATAAAGTTTGATTTATTCAATGGTAGACGTTAAGATGCCTCTGTGGCATTATTATTTCTCTTT TAGCTTGTACAATGTCATTTCTATTGCTCATGGTGTTGGGAAGTAGCAGTATAAAATTCATGTGAAGCTTCATTGTTTTT TCATCAACTTCCACTGATGATGGGTTCCTTTTTGTTTGTCCAGTAGTGCTTGGCTTTTTTTAGTTTCATGCTGGCTGAAA TGTTTATACTTCTAGTTCTGTACCTTGCTCTGTTGCATCCTTTCTAAAATCTTATAGGCACTCACTGAAAACCTGTAAGA CCACGAATAATTCTGGAACTGACTGACTTGGCTCTGTGTGGGGTTTACATTCAGCACTTCTGAAGAATAATATCTTTTGG CACACTTGTGAACATCATAATATGGAAGCTTCTGAGCATATGTTGGTCATGGTCCTGCTGCAGCTTCTTTTTTGTCTGTT GCTGGATTCATATTTCAGACATTTCATCACATCATTTGTTTGGCTTAATCTTTATTTTATCTCTTAAACCTTGGAAGTTT GTGCCACAATTCATTAACTTTTTCTAGTAAAAATGTATAATAGGCTTCCTAATCAGTTGTAACTTGTAGTTGTACCAATG TTCATTTAGCTTTCTAGCATATACTACACACTCATTTGTAATTATTTAGCAATTTCCCTGTCATCTAATACTTTTTAACT TTTGTTTCCTTACCATTGTCCGCAAGGGCACATGTCACTGACATGTGCATTATGTCAGCATTCTTCACACACACAATTAT TTTCCTTTGTTTCTGTTCATTTTTTTGTACCCATAACTTATAATCAGCAATTGCGCAGGATGACATGGGACATAAGAACA CTATTGCTGGATTTCATTCTCGCCCAGCCAGCCGCAATGCATTTGATGAAAATGTTGATATTATGACTTCTGCTGAAGCA GACCTGGCTCATTTATGCCGTGATTCCTCAACCACTGATGCCTTAAGATCTGGAACAAATCTTCAGGGTTCATCTGCAAC CCAAAATATTGGCACACAAAGTTCATATAGTTATGCTGCTGCACTTGGCTCTCCCTTGTCACGAAGTACCACTCCTGATC CACAGCATGTTGCTAGAGCCCCCAGTCCTTGCCTCACACCTATTGGTGGTGGGAGAGTTGTTGCTGCTGAGAAGAGAGGC ATGGCCAATCCTGATGCATATAATGTTTCATCCGGCCTCAATGGGTCAGCTGATATTGTGGATGCATTATCTGGCATGAA TTTGTCAGCTGATGATGTATTGGATGGTGATAACCATTTCCCATCACAGGTTGAGTCAGATGTTGATAATCATAGGAGAT ATCTTTTTGGTTTGCAAGGTGGTCAGGATCATGGCAAGCAGCATGCATATTTAAAGAAGTCTGAGTCAGGACACATGCAA AAAACAGCTTACTCTGGTCCAGGTAAGAGCGGTGGGAACGGATCAGACATCAACAATTCCTTGGATAGGCAGATTGAGCT GCAAAAATCTGCTGTTTCTCCCAATAACTCATATTTCAAGGGATCACCTACATCTCCTTTTAATGGTGGAGGTGGTATGC CTGCTCAGTACCAGCCTTTAGATGGTACCAATTCATCATTCACTAACTATGGCCTGAGTGGGTATGCTGGAAATCCAGCA TTGGCATCCTTGATGGCTAGCCAACTTGGAACTGGTAATATGCCACCCCTATTTGAAAATGTTGCTGCAGCATCAGCAAT GGCTTCCCCTGGAATGGACTCTAGAATTCTTGGTGGTTTGGCTTCTGGCGTTGCTTCTCCATCTGATTTGCATATTCACG GAAGAATGGGAAATCAAATTTCAGGTGGTGCTCTCCAGGCTCCTTTTGTCGATCCCATGTATCTTCAGTACATGAGAGCA TCTGAATATGGTTCCCCACAACTGGCTGCACTTAACGACCCATCTGTGGATAGAAATTACTTGGGCAACTCGTACATGAA TTTACTTGAGCTTCAGAAAGCTTATCTTGGGAATCTGCTTTCACCTCATAAGTCTCAATACAATGTTCCACTGGGTGGTA AATCAGGTGGCTCCAATCATCATGGTTATTATGGAAATCCTGCGTATGGGGTTGGTTTGTCTTACCCTGGAAGTCCGATG GCAAACTCTTTATCCTCTTCTCCAGTTGGATCTGGCAGTCCTATTAGGCACAATGATCTGAATATGCATTTTGCGTCTGG AATGAGGAATGTAGCTGGTGTTATGGGACCATGGCATCTAGATACTGGAAACATGGATGAAAGCTTTGCATCGTCTCTGT TGGAAGAGTTTAAAAGCAACAAAACAAAATGTTTTGAGCTTTCTGAAATTTCCGGCCATGTTGTTGAATTCAGGTTTTTT TGCCTGTTAGTTGTTTTGGTGGTTAATTACTTAATTTTATATTGCTCTAATTTCATTTGAAAAAATTAATTTTATGAATT GTCTCTCATCTGCAGTGCTGATCAATATGGGAGCCGGTTTATCCAACAAAAGCTTGAAACAGCAACTACTGAAGAAAAAA CTATGGTTTATCAGGAAATTATGCCTCATGCTCTTGCGTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGGTA GATATTAATTAACATTCTCACTCTACTGCTTAAGTTGTTCGCTTTTAATGGATCTTGTTAGACTGACAATTTCCATCTGG CAGTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAGTTAGCCAACAAGCTATTTAGCCATGTTCTGACACTTAGCCT TCAAATGTATGGTTGTCGGGTCATCCAGAAGGTATTGACAGCTTTGTGTATAGTGATTTCTATGAATGACTGTGCATGGT CTTCTGAATATATCATCTGTTTATGTTTTTTTAATAAATATTTTATATATCTCTTTAGGCCATAGAAGTTGTTGATCTAG ACCAGAAGATAAAGATGGTTCAAGAGCTTGATGGTAATATCATGCGCTGTGTACGAGATCAGAATGGTAACCATGTTATT CAGAAGTGTATTGAATGTGTACCTGAAGATGCAATCGACTTTATTGTCTCAACCTTTTTTGATCAAGTTGTGACACTATC AACCCATCCATATGGTTGTCGGGTGATACAGGTAAAATTCTTCGGTACTTGTGTTATTCTTTGTATGTACTTAAATCCTT GAACATACAATGATGCCTTTTACATGGCAGAGAGTCCTGGAGCACTGCAAAGACCCTAACACACAGCAAAAAGTTATGGA TGAGATTTTAGGAGCAGTTAGCATGTTAGCCCAGGATCAGTACGGAAACTATGTTGTCCAGGTTTATAATTTATTCTTAC AACTTACAGTTAGGGCTTTTCTATTGCTGCAACTATTGACTTGAAAGTTGAAGCCTGACAGTTTCATGCTGTGTGTGGTA GTTGATGTTGTTGCTTGTGAATTCCCTGCAGCAATCTAGCTTTGTTGAGATGATAATACAGATCATCATAGTTTTTCTGC ACTTTCGGTTGATTATAATCCTTGTAGTTCACCTCTCATGTTTTTCTGAAATTATTCCACTGCACATTTTTTTTCTACAA TTGTTTTATTTACCTTTTATCTGAACATATGAATGTCTCCTCCTTTGTTATGAATATGATATACATTGACACAGCATTTT CCTTGTCAATGGTATGACGAAATTCAGTATTAGACTTTTTTATGTTTTTAATTGTGCATGTCTTGGAAGACATGTGTATT GTGTATAACTCCTTCCAAATTTTTATTGCTTGTGATATGAACTTCTAGTTGCTTCTCCAGCAAATACTTGGTACCTCATA CAAATGAAGCTTTTGTATTACTTGACTTTATATCCACATAGTATGTCATATATACAAGTCAAGCTGATCACTTGTCCTGT TTCATCCCCTCTTGAATAACAGCATGTACTTGAGCATGGGAAACCTCATGAGCGTTCAGCTATTATCAAGGAATTAACTG GCAATATTGTTCAAATGAGCCAACAGAAGTTTGCCTCAAATGTTGTGGAGAAGTGTTTGGCCTTTGGAGGTCCTGCTGAA CGCCAATTTCTTGTGAATGAGATGCTTGGATCCACGGATGAAAATGAGCCTCTTCAGGTTCTTTAAATTACCTTTATAAA CTACATTATCCCCCCTACTGTCTACTGATTATTCTGAGAACCTTAGAATTATCTCTCCAAAGATTTAAATATGAGTAGTT ATTACTATAATTAAAAACATGTTGACCTAGTCTTTTAAAAATAATATTGTCCATGCATCCACGCTGTAGAATGTTTGAAT ACATTGATGTGTTTTCACATATTTCGTGAATCTGTATTGAGCCTTGATTACTGAAGTTTATGATCTATAAAAAGATGGTA ATTTTATTCCTACAGTCCTTTTGATACAATTGATACACTTCGTAAGGATGCTCTAGATCCCCATCATATCTTTACGAAAC TGGTAGTAGTTTGTCATTCTTCAAATGCTAAATCGGGTTCCTTTTATTTACAGGCCATGATGAAAGATCAATTTGCTAAT TATGTTGTGCAAAAGGTGCTGGAGACTTGTGATGACCATCAGCGTGAGCTAATTCTTTCACGAATTAAAGTCCATCTGAA TGCATTGAAAAAATACACCTACGGAAAGCATATTGTCGCACGTGTAGAGAAACTTGTTGCTGCTGGAGGTACTTAATTCC TCATTTGCACTATCACTTATTTTGA 

CDS sequence (LotjaGi3g1v0285500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGTCTGAACTGGGTAGGAGGCCGGTGCTGGGTGGGAACGAGGGTTCTTTTGGTGATGAATTGGATAAGGAGATAGG GATGTTGCTTCGTGAGCAGCGGCGGCAGGATGTTGATGATCACGAGCGCGAGCTCAATCGGTATAGGAGTGGATCAGCGC CTCCAACTGTGGAGGGTTCTCTGAATGCAGTTGGAGGGTTGTTTGGAGGCGGCGGCGGCGGCGGTCTCGCTGGCCCATTT TCTGAATTTCCTGGGGCTAACCATGAGAATGATTTTGCGTCTGAGGAAGAGCTTAGGTCTGATCCGGCTTATCTTCAATA CTATTACTCCAATGTGAATTTGAATCCTCGACTTCCGCCTCCTTTGCTATCAAAGGAGGATTGGAGGTCTGCACAGAGAG CTTCAGTTCTTGGTGGAATTGGAGATAGGAGAAAAGTGAACAGGGTTGATGACAGTGGTGCTAGATCATTGTTTGCAACC CCTCCGGGGTTTAACTCGAGGAAGTCAGAGAGTGAGGCGGAGAACGAGAAAATGAGAGGTTCTGCTTCTGCAGAGTGGGG TGGTGATGGGCTCATTGGCTTGCCAGGCCTAGGTCTTGGGAGTAAACAAAAGAGCCTTGCAGAAATTTTCCAGGATGACA TGGGACATAAGAACACTATTGCTGGATTTCATTCTCGCCCAGCCAGCCGCAATGCATTTGATGAAAATGTTGATATTATG ACTTCTGCTGAAGCAGACCTGGCTCATTTATGCCGTGATTCCTCAACCACTGATGCCTTAAGATCTGGAACAAATCTTCA GGGTTCATCTGCAACCCAAAATATTGGCACACAAAGTTCATATAGTTATGCTGCTGCACTTGGCTCTCCCTTGTCACGAA GTACCACTCCTGATCCACAGCATGTTGCTAGAGCCCCCAGTCCTTGCCTCACACCTATTGGTGGTGGGAGAGTTGTTGCT GCTGAGAAGAGAGGCATGGCCAATCCTGATGCATATAATGTTTCATCCGGCCTCAATGGGTCAGCTGATATTGTGGATGC ATTATCTGGCATGAATTTGTCAGCTGATGATGTATTGGATGGTGATAACCATTTCCCATCACAGGTTGAGTCAGATGTTG ATAATCATAGGAGATATCTTTTTGGTTTGCAAGGTGGTCAGGATCATGGCAAGCAGCATGCATATTTAAAGAAGTCTGAG TCAGGACACATGCAAAAAACAGCTTACTCTGGTCCAGGTAAGAGCGGTGGGAACGGATCAGACATCAACAATTCCTTGGA TAGGCAGATTGAGCTGCAAAAATCTGCTGTTTCTCCCAATAACTCATATTTCAAGGGATCACCTACATCTCCTTTTAATG GTGGAGGTGGTATGCCTGCTCAGTACCAGCCTTTAGATGGTACCAATTCATCATTCACTAACTATGGCCTGAGTGGGTAT GCTGGAAATCCAGCATTGGCATCCTTGATGGCTAGCCAACTTGGAACTGGTAATATGCCACCCCTATTTGAAAATGTTGC TGCAGCATCAGCAATGGCTTCCCCTGGAATGGACTCTAGAATTCTTGGTGGTTTGGCTTCTGGCGTTGCTTCTCCATCTG ATTTGCATATTCACGGAAGAATGGGAAATCAAATTTCAGGTGGTGCTCTCCAGGCTCCTTTTGTCGATCCCATGTATCTT CAGTACATGAGAGCATCTGAATATGGTTCCCCACAACTGGCTGCACTTAACGACCCATCTGTGGATAGAAATTACTTGGG CAACTCGTACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGGAATCTGCTTTCACCTCATAAGTCTCAATACAATG TTCCACTGGGTGGTAAATCAGGTGGCTCCAATCATCATGGTTATTATGGAAATCCTGCGTATGGGGTTGGTTTGTCTTAC CCTGGAAGTCCGATGGCAAACTCTTTATCCTCTTCTCCAGTTGGATCTGGCAGTCCTATTAGGCACAATGATCTGAATAT GCATTTTGCGTCTGGAATGAGGAATGTAGCTGGTGTTATGGGACCATGGCATCTAGATACTGGAAACATGGATGAAAGCT TTGCATCGTCTCTGTTGGAAGAGTTTAAAAGCAACAAAACAAAATGTTTTGAGCTTTCTGAAATTTCCGGCCATGTTGTT GAATTCAGTGCTGATCAATATGGGAGCCGGTTTATCCAACAAAAGCTTGAAACAGCAACTACTGAAGAAAAAACTATGGT TTATCAGGAAATTATGCCTCATGCTCTTGCGTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGC ATGGACTTGCATCCCAGAGAAGAGAGTTAGCCAACAAGCTATTTAGCCATGTTCTGACACTTAGCCTTCAAATGTATGGT TGTCGGGTCATCCAGAAGGCCATAGAAGTTGTTGATCTAGACCAGAAGATAAAGATGGTTCAAGAGCTTGATGGTAATAT CATGCGCTGTGTACGAGATCAGAATGGTAACCATGTTATTCAGAAGTGTATTGAATGTGTACCTGAAGATGCAATCGACT TTATTGTCTCAACCTTTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGTTGTCGGGTGATACAGAGAGTCCTG GAGCACTGCAAAGACCCTAACACACAGCAAAAAGTTATGGATGAGATTTTAGGAGCAGTTAGCATGTTAGCCCAGGATCA GTACGGAAACTATGTTGTCCAGCATGTACTTGAGCATGGGAAACCTCATGAGCGTTCAGCTATTATCAAGGAATTAACTG GCAATATTGTTCAAATGAGCCAACAGAAGTTTGCCTCAAATGTTGTGGAGAAGTGTTTGGCCTTTGGAGGTCCTGCTGAA CGCCAATTTCTTGTGAATGAGATGCTTGGATCCACGGATGAAAATGAGCCTCTTCAGGCCATGATGAAAGATCAATTTGC TAATTATGTTGTGCAAAAGGTGCTGGAGACTTGTGATGACCATCAGCGTGAGCTAATTCTTTCACGAATTAAAGTCCATC TGAATGCATTGAAAAAATACACCTACGGAAAGCATATTGTCGCACGTGTAGAGAAACTTGTTGCTGCTGGAGGTACTTAA 

Protein sequence (LotjaGi3g1v0285500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLSELGRRPVLGGNEGSFGDELDKEIGMLLREQRRQDVDDHERELNRYRSGSAPPTVEGSLNAVGGLFGGGGGGGLAGPF SEFPGANHENDFASEEELRSDPAYLQYYYSNVNLNPRLPPPLLSKEDWRSAQRASVLGGIGDRRKVNRVDDSGARSLFAT PPGFNSRKSESEAENEKMRGSASAEWGGDGLIGLPGLGLGSKQKSLAEIFQDDMGHKNTIAGFHSRPASRNAFDENVDIM TSAEADLAHLCRDSSTTDALRSGTNLQGSSATQNIGTQSSYSYAAALGSPLSRSTTPDPQHVARAPSPCLTPIGGGRVVA AEKRGMANPDAYNVSSGLNGSADIVDALSGMNLSADDVLDGDNHFPSQVESDVDNHRRYLFGLQGGQDHGKQHAYLKKSE SGHMQKTAYSGPGKSGGNGSDINNSLDRQIELQKSAVSPNNSYFKGSPTSPFNGGGGMPAQYQPLDGTNSSFTNYGLSGY AGNPALASLMASQLGTGNMPPLFENVAAASAMASPGMDSRILGGLASGVASPSDLHIHGRMGNQISGGALQAPFVDPMYL QYMRASEYGSPQLAALNDPSVDRNYLGNSYMNLLELQKAYLGNLLSPHKSQYNVPLGGKSGGSNHHGYYGNPAYGVGLSY PGSPMANSLSSSPVGSGSPIRHNDLNMHFASGMRNVAGVMGPWHLDTGNMDESFASSLLEEFKSNKTKCFELSEISGHVV EFSADQYGSRFIQQKLETATTEEKTMVYQEIMPHALALMTDVFGNYVVQKFFEHGLASQRRELANKLFSHVLTLSLQMYG CRVIQKAIEVVDLDQKIKMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFIVSTFFDQVVTLSTHPYGCRVIQRVL EHCKDPNTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSAIIKELTGNIVQMSQQKFASNVVEKCLAFGGPAE RQFLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGGT 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 31 1038 1008 0.0
PANTHER 31 1038 1008 0.0
MobiDBLite 34 64 31 -
MobiDBLite 34 48 15 -
MobiDBLite 151 186 36 -
MobiDBLite 288 307 20 -
Pfam 304 713 410 2.1E-152
MobiDBLite 384 424 41 -
MobiDBLite 403 424 22 -
MobiDBLite 436 465 30 -
ProSiteProfiles 694 1034 341 132.745
Gene3D 694 1036 343 1.4E-141
SUPERFAMILY 697 1031 335 2.3E-119
CDD 710 1030 321 4.79925E-176
ProSiteProfiles 714 749 36 11.3
Pfam 714 744 31 1.6E-6
SMART 714 749 36 2.4E-5
SMART 750 785 36 2.1E-6
ProSiteProfiles 750 785 36 10.46
Pfam 753 781 29 3.6E-6
SMART 786 821 36 4.5E-7
ProSiteProfiles 786 821 36 10.577
Pfam 787 816 30 2.2E-5
ProSiteProfiles 822 857 36 9.924
SMART 822 857 36 4.5E-7
Pfam 827 855 29 8.1E-6
ProSiteProfiles 858 894 37 10.88
SMART 858 894 37 3.2E-7
Pfam 859 890 32 6.1E-9
ProSiteProfiles 895 930 36 12.117
SMART 895 930 36 1.8E-6
Pfam 898 926 29 2.3E-6
SMART 931 966 36 8.6E-8
ProSiteProfiles 931 966 36 9.69
Pfam 932 964 33 2.4E-5
ProSiteProfiles 967 1008 42 10.017
SMART 973 1008 36 8.7E-7
Pfam 981 1007 27 2.4E-6

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0285500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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