Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0285500 |
Transcript ID | LotjaGi3g1v0285500.3 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:57700365..57705909) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTGTCTGAACTGGGTAGGAGGCCGGTGCTGGGTGGGAACGAGGGTTCTTTTGGTGATGAATTGGATAAGGAGATAGG GATGTTGCTTCGTGAGCAGCGGCGGCAGGATGTTGATGATCACGAGCGCGAGCTCAATCGGTATAGGAGTGGATCAGCGC CTCCAACTGTGGAGGGTTCTCTGAATGCAGTTGGAGGGTTGTTTGGAGGCGGCGGCGGCGGCGGTCTCGCTGGCCCATTT TCTGAATTTCCTGGGGCTAACCATGAGAATGATTTTGCGTCTGAGGAAGAGCTTAGGTCTGATCCGGCTTATCTTCAATA CTATTACTCCAATGTGAATTTGAATCCTCGACTTCCGCCTCCTTTGCTATCAAAGGAGGATTGGAGGTCTGCACAGAGAG CTTCAGTTCTTGGTGGAATTGGAGATAGGAGAAAAGTGAACAGGGTTGATGACAGTGGTGCTAGATCATTGTTTGCAACC CCTCCGGGGTTTAACTCGAGGAAGTCAGAGAGTGAGGCGGAGAACGAGAAAATGAGAGGTTCTGCTTCTGCAGAGTGGGG TGGTGATGGGCTCATTGGCTTGCCAGGCCTAGGTCTTGGGAGTAAACAAAAGAGCCTTGCAGAAATTTTCCAGGTAGCTT GCTTCTTTCATTGTGTTCTATTCTTGGCACCCTCACTCTTTAGCATCTATTCATTTTTGTGTTTTCACTTTTATCTTTGA CACATCATACGATATTGGTTTCTTAGGTTCAACATGTGGTTCATTGATGCATTTATATCTTTTTTTTAATGTTTGAACTT GTTAAATCTTGTGGGAAATAAAGTTTGATTTATTCAATGGTAGACGTTAAGATGCCTCTGTGGCATTATTATTTCTCTTT TAGCTTGTACAATGTCATTTCTATTGCTCATGGTGTTGGGAAGTAGCAGTATAAAATTCATGTGAAGCTTCATTGTTTTT TCATCAACTTCCACTGATGATGGGTTCCTTTTTGTTTGTCCAGTAGTGCTTGGCTTTTTTTAGTTTCATGCTGGCTGAAA TGTTTATACTTCTAGTTCTGTACCTTGCTCTGTTGCATCCTTTCTAAAATCTTATAGGCACTCACTGAAAACCTGTAAGA CCACGAATAATTCTGGAACTGACTGACTTGGCTCTGTGTGGGGTTTACATTCAGCACTTCTGAAGAATAATATCTTTTGG CACACTTGTGAACATCATAATATGGAAGCTTCTGAGCATATGTTGGTCATGGTCCTGCTGCAGCTTCTTTTTTGTCTGTT GCTGGATTCATATTTCAGACATTTCATCACATCATTTGTTTGGCTTAATCTTTATTTTATCTCTTAAACCTTGGAAGTTT GTGCCACAATTCATTAACTTTTTCTAGTAAAAATGTATAATAGGCTTCCTAATCAGTTGTAACTTGTAGTTGTACCAATG TTCATTTAGCTTTCTAGCATATACTACACACTCATTTGTAATTATTTAGCAATTTCCCTGTCATCTAATACTTTTTAACT TTTGTTTCCTTACCATTGTCCGCAAGGGCACATGTCACTGACATGTGCATTATGTCAGCATTCTTCACACACACAATTAT TTTCCTTTGTTTCTGTTCATTTTTTTGTACCCATAACTTATAATCAGCAATTGCGCAGGATGACATGGGACATAAGAACA CTATTGCTGGATTTCATTCTCGCCCAGCCAGCCGCAATGCATTTGATGAAAATGTTGATATTATGACTTCTGCTGAAGCA GACCTGGCTCATTTATGCCGTGATTCCTCAACCACTGATGCCTTAAGATCTGGAACAAATCTTCAGGGTTCATCTGCAAC CCAAAATATTGGCACACAAAGTTCATATAGTTATGCTGCTGCACTTGGCTCTCCCTTGTCACGAAGTACCACTCCTGATC CACAGCATGTTGCTAGAGCCCCCAGTCCTTGCCTCACACCTATTGGTGGTGGGAGAGTTGTTGCTGCTGAGAAGAGAGGC ATGGCCAATCCTGATGCATATAATGTTTCATCCGGCCTCAATGGGTCAGCTGATATTGTGGATGCATTATCTGGCATGAA TTTGTCAGCTGATGATGTATTGGATGGTGATAACCATTTCCCATCACAGGTTGAGTCAGATGTTGATAATCATAGGAGAT ATCTTTTTGGTTTGCAAGGTGGTCAGGATCATGGCAAGCAGCATGCATATTTAAAGAAGTCTGAGTCAGGACACATGCAA AAAACAGCTTACTCTGGTCCAGGTAAGAGCGGTGGGAACGGATCAGACATCAACAATTCCTTGGATAGGCAGATTGAGCT GCAAAAATCTGCTGTTTCTCCCAATAACTCATATTTCAAGGGATCACCTACATCTCCTTTTAATGGTGGAGGTGGTATGC CTGCTCAGTACCAGCCTTTAGATGGTACCAATTCATCATTCACTAACTATGGCCTGAGTGGGTATGCTGGAAATCCAGCA TTGGCATCCTTGATGGCTAGCCAACTTGGAACTGGTAATATGCCACCCCTATTTGAAAATGTTGCTGCAGCATCAGCAAT GGCTTCCCCTGGAATGGACTCTAGAATTCTTGGTGGTTTGGCTTCTGGCGTTGCTTCTCCATCTGATTTGCATATTCACG GAAGAATGGGAAATCAAATTTCAGGTGGTGCTCTCCAGGCTCCTTTTGTCGATCCCATGTATCTTCAGTACATGAGAGCA TCTGAATATGGTTCCCCACAACTGGCTGCACTTAACGACCCATCTGTGGATAGAAATTACTTGGGCAACTCGTACATGAA TTTACTTGAGCTTCAGAAAGCTTATCTTGGGAATCTGCTTTCACCTCATAAGTCTCAATACAATGTTCCACTGGGTGGTA AATCAGGTGGCTCCAATCATCATGGTTATTATGGAAATCCTGCGTATGGGGTTGGTTTGTCTTACCCTGGAAGTCCGATG GCAAACTCTTTATCCTCTTCTCCAGTTGGATCTGGCAGTCCTATTAGGCACAATGATCTGAATATGCATTTTGCGTCTGG AATGAGGAATGTAGCTGGTGTTATGGGACCATGGCATCTAGATACTGGAAACATGGATGAAAGCTTTGCATCGTCTCTGT TGGAAGAGTTTAAAAGCAACAAAACAAAATGTTTTGAGCTTTCTGAAATTTCCGGCCATGTTGTTGAATTCAGGTTTTTT TGCCTGTTAGTTGTTTTGGTGGTTAATTACTTAATTTTATATTGCTCTAATTTCATTTGAAAAAATTAATTTTATGAATT GTCTCTCATCTGCAGTGCTGATCAATATGGGAGCCGGTTTATCCAACAAAAGCTTGAAACAGCAACTACTGAAGAAAAAA CTATGGTTTATCAGGAAATTATGCCTCATGCTCTTGCGTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGGTA GATATTAATTAACATTCTCACTCTACTGCTTAAGTTGTTCGCTTTTAATGGATCTTGTTAGACTGACAATTTCCATCTGG CAGTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAGTTAGCCAACAAGCTATTTAGCCATGTTCTGACACTTAGCCT TCAAATGTATGGTTGTCGGGTCATCCAGAAGGTATTGACAGCTTTGTGTATAGTGATTTCTATGAATGACTGTGCATGGT CTTCTGAATATATCATCTGTTTATGTTTTTTTAATAAATATTTTATATATCTCTTTAGGCCATAGAAGTTGTTGATCTAG ACCAGAAGATAAAGATGGTTCAAGAGCTTGATGGTAATATCATGCGCTGTGTACGAGATCAGAATGGTAACCATGTTATT CAGAAGTGTATTGAATGTGTACCTGAAGATGCAATCGACTTTATTGTCTCAACCTTTTTTGATCAAGTTGTGACACTATC AACCCATCCATATGGTTGTCGGGTGATACAGGTAAAATTCTTCGGTACTTGTGTTATTCTTTGTATGTACTTAAATCCTT GAACATACAATGATGCCTTTTACATGGCAGAGAGTCCTGGAGCACTGCAAAGACCCTAACACACAGCAAAAAGTTATGGA TGAGATTTTAGGAGCAGTTAGCATGTTAGCCCAGGATCAGTACGGAAACTATGTTGTCCAGGTTTATAATTTATTCTTAC AACTTACAGTTAGGGCTTTTCTATTGCTGCAACTATTGACTTGAAAGTTGAAGCCTGACAGTTTCATGCTGTGTGTGGTA GTTGATGTTGTTGCTTGTGAATTCCCTGCAGCAATCTAGCTTTGTTGAGATGATAATACAGATCATCATAGTTTTTCTGC ACTTTCGGTTGATTATAATCCTTGTAGTTCACCTCTCATGTTTTTCTGAAATTATTCCACTGCACATTTTTTTTCTACAA TTGTTTTATTTACCTTTTATCTGAACATATGAATGTCTCCTCCTTTGTTATGAATATGATATACATTGACACAGCATTTT CCTTGTCAATGGTATGACGAAATTCAGTATTAGACTTTTTTATGTTTTTAATTGTGCATGTCTTGGAAGACATGTGTATT GTGTATAACTCCTTCCAAATTTTTATTGCTTGTGATATGAACTTCTAGTTGCTTCTCCAGCAAATACTTGGTACCTCATA CAAATGAAGCTTTTGTATTACTTGACTTTATATCCACATAGTATGTCATATATACAAGTCAAGCTGATCACTTGTCCTGT TTCATCCCCTCTTGAATAACAGCATGTACTTGAGCATGGGAAACCTCATGAGCGTTCAGCTATTATCAAGGAATTAACTG GCAATATTGTTCAAATGAGCCAACAGAAGTTTGCCTCAAATGTTGTGGAGAAGTGTTTGGCCTTTGGAGGTCCTGCTGAA CGCCAATTTCTTGTGAATGAGATGCTTGGATCCACGGATGAAAATGAGCCTCTTCAGGTTCTTTAAATTACCTTTATAAA CTACATTATCCCCCCTACTGTCTACTGATTATTCTGAGAACCTTAGAATTATCTCTCCAAAGATTTAAATATGAGTAGTT ATTACTATAATTAAAAACATGTTGACCTAGTCTTTTAAAAATAATATTGTCCATGCATCCACGCTGTAGAATGTTTGAAT ACATTGATGTGTTTTCACATATTTCGTGAATCTGTATTGAGCCTTGATTACTGAAGTTTATGATCTATAAAAAGATGGTA ATTTTATTCCTACAGTCCTTTTGATACAATTGATACACTTCGTAAGGATGCTCTAGATCCCCATCATATCTTTACGAAAC TGGTAGTAGTTTGTCATTCTTCAAATGCTAAATCGGGTTCCTTTTATTTACAGGCCATGATGAAAGATCAATTTGCTAAT TATGTTGTGCAAAAGGTGCTGGAGACTTGTGATGACCATCAGCGTGAGCTAATTCTTTCACGAATTAAAGTCCATCTGAA TGCATTGAAAAAATACACCTACGGAAAGCATATTGTCGCACGTGTAGAGAAACTTGTTGCTGCTGGAGGTACTTAATTCC TCATTTGCACTATCACTTATTTTGA
CDS sequence (LotjaGi3g1v0285500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAATCCTGATGCATATAATGTTTCATCCGGCCTCAATGGGTCAGCTGATATTGTGGATGCATTATCTGGCATGAA TTTGTCAGCTGATGATGTATTGGATGGTGATAACCATTTCCCATCACAGGTTGAGTCAGATGTTGATAATCATAGGAGAT ATCTTTTTGGTTTGCAAGGTGGTCAGGATCATGGCAAGCAGCATGCATATTTAAAGAAGTCTGAGTCAGGACACATGCAA AAAACAGCTTACTCTGGTCCAGGTAAGAGCGGTGGGAACGGATCAGACATCAACAATTCCTTGGATAGGCAGATTGAGCT GCAAAAATCTGCTGTTTCTCCCAATAACTCATATTTCAAGGGATCACCTACATCTCCTTTTAATGGTGGAGGTGGTATGC CTGCTCAGTACCAGCCTTTAGATGGTACCAATTCATCATTCACTAACTATGGCCTGAGTGGGTATGCTGGAAATCCAGCA TTGGCATCCTTGATGGCTAGCCAACTTGGAACTGGTAATATGCCACCCCTATTTGAAAATGTTGCTGCAGCATCAGCAAT GGCTTCCCCTGGAATGGACTCTAGAATTCTTGGTGGTTTGGCTTCTGGCGTTGCTTCTCCATCTGATTTGCATATTCACG GAAGAATGGGAAATCAAATTTCAGGTGGTGCTCTCCAGGCTCCTTTTGTCGATCCCATGTATCTTCAGTACATGAGAGCA TCTGAATATGGTTCCCCACAACTGGCTGCACTTAACGACCCATCTGTGGATAGAAATTACTTGGGCAACTCGTACATGAA TTTACTTGAGCTTCAGAAAGCTTATCTTGGGAATCTGCTTTCACCTCATAAGTCTCAATACAATGTTCCACTGGGTGGTA AATCAGGTGGCTCCAATCATCATGGTTATTATGGAAATCCTGCGTATGGGGTTGGTTTGTCTTACCCTGGAAGTCCGATG GCAAACTCTTTATCCTCTTCTCCAGTTGGATCTGGCAGTCCTATTAGGCACAATGATCTGAATATGCATTTTGCGTCTGG AATGAGGAATGTAGCTGGTGTTATGGGACCATGGCATCTAGATACTGGAAACATGGATGAAAGCTTTGCATCGTCTCTGT TGGAAGAGTTTAAAAGCAACAAAACAAAATGTTTTGAGCTTTCTGAAATTTCCGGCCATGTTGTTGAATTCAGTGCTGAT CAATATGGGAGCCGGTTTATCCAACAAAAGCTTGAAACAGCAACTACTGAAGAAAAAACTATGGTTTATCAGGAAATTAT GCCTCATGCTCTTGCGTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCATCCC AGAGAAGAGAGTTAGCCAACAAGCTATTTAGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGTCGGGTCATCCAG AAGGCCATAGAAGTTGTTGATCTAGACCAGAAGATAAAGATGGTTCAAGAGCTTGATGGTAATATCATGCGCTGTGTACG AGATCAGAATGGTAACCATGTTATTCAGAAGTGTATTGAATGTGTACCTGAAGATGCAATCGACTTTATTGTCTCAACCT TTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGTTGTCGGGTGATACAGAGAGTCCTGGAGCACTGCAAAGAC CCTAACACACAGCAAAAAGTTATGGATGAGATTTTAGGAGCAGTTAGCATGTTAGCCCAGGATCAGTACGGAAACTATGT TGTCCAGCATGTACTTGAGCATGGGAAACCTCATGAGCGTTCAGCTATTATCAAGGAATTAACTGGCAATATTGTTCAAA TGAGCCAACAGAAGTTTGCCTCAAATGTTGTGGAGAAGTGTTTGGCCTTTGGAGGTCCTGCTGAACGCCAATTTCTTGTG AATGAGATGCTTGGATCCACGGATGAAAATGAGCCTCTTCAGGCCATGATGAAAGATCAATTTGCTAATTATGTTGTGCA AAAGGTGCTGGAGACTTGTGATGACCATCAGCGTGAGCTAATTCTTTCACGAATTAAAGTCCATCTGAATGCATTGAAAA AATACACCTACGGAAAGCATATTGTCGCACGTGTAGAGAAACTTGTTGCTGCTGGAGGTACTTAA
Protein sequence (LotjaGi3g1v0285500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANPDAYNVSSGLNGSADIVDALSGMNLSADDVLDGDNHFPSQVESDVDNHRRYLFGLQGGQDHGKQHAYLKKSESGHMQ KTAYSGPGKSGGNGSDINNSLDRQIELQKSAVSPNNSYFKGSPTSPFNGGGGMPAQYQPLDGTNSSFTNYGLSGYAGNPA LASLMASQLGTGNMPPLFENVAAASAMASPGMDSRILGGLASGVASPSDLHIHGRMGNQISGGALQAPFVDPMYLQYMRA SEYGSPQLAALNDPSVDRNYLGNSYMNLLELQKAYLGNLLSPHKSQYNVPLGGKSGGSNHHGYYGNPAYGVGLSYPGSPM ANSLSSSPVGSGSPIRHNDLNMHFASGMRNVAGVMGPWHLDTGNMDESFASSLLEEFKSNKTKCFELSEISGHVVEFSAD QYGSRFIQQKLETATTEEKTMVYQEIMPHALALMTDVFGNYVVQKFFEHGLASQRRELANKLFSHVLTLSLQMYGCRVIQ KAIEVVDLDQKIKMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKD PNTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSAIIKELTGNIVQMSQQKFASNVVEKCLAFGGPAERQFLV NEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 713 | 710 | 0.0 | – | |
PANTHER | 4 | 713 | 710 | 0.0 | – | |
Pfam | 8 | 388 | 381 | 2.0E-141 | ||
MobiDBLite | 59 | 99 | 41 | - | – | |
MobiDBLite | 78 | 99 | 22 | - | – | |
MobiDBLite | 111 | 140 | 30 | - | – | |
Gene3D | 369 | 711 | 343 | 6.1E-142 | ||
ProSiteProfiles | 369 | 709 | 341 | 132.745 | ||
SUPERFAMILY | 372 | 706 | 335 | 1.06E-119 | ||
CDD | 385 | 705 | 321 | 1.15991E-175 | ||
Pfam | 389 | 419 | 31 | 1.1E-6 | ||
ProSiteProfiles | 389 | 424 | 36 | 11.3 | ||
SMART | 389 | 424 | 36 | 2.4E-5 | ||
ProSiteProfiles | 425 | 460 | 36 | 10.46 | ||
SMART | 425 | 460 | 36 | 2.1E-6 | ||
Pfam | 428 | 456 | 29 | 2.4E-6 | ||
ProSiteProfiles | 461 | 496 | 36 | 10.577 | ||
SMART | 461 | 496 | 36 | 4.5E-7 | ||
Pfam | 462 | 491 | 30 | 1.4E-5 | ||
ProSiteProfiles | 497 | 532 | 36 | 9.924 | ||
SMART | 497 | 532 | 36 | 4.5E-7 | ||
Pfam | 502 | 530 | 29 | 5.2E-6 | ||
ProSiteProfiles | 533 | 569 | 37 | 10.88 | ||
SMART | 533 | 569 | 37 | 3.2E-7 | ||
Pfam | 534 | 565 | 32 | 3.9E-9 | ||
SMART | 570 | 605 | 36 | 1.8E-6 | ||
ProSiteProfiles | 570 | 605 | 36 | 12.117 | ||
Pfam | 573 | 601 | 29 | 1.5E-6 | ||
ProSiteProfiles | 606 | 641 | 36 | 9.69 | ||
SMART | 606 | 641 | 36 | 8.6E-8 | ||
Pfam | 607 | 639 | 33 | 1.6E-5 | ||
ProSiteProfiles | 642 | 683 | 42 | 10.017 | ||
SMART | 648 | 683 | 36 | 8.7E-7 | ||
Pfam | 656 | 682 | 27 | 1.6E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi3g1v0285500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…