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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0285500 |
| Transcript ID | LotjaGi3g1v0285500.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|A0A0B2RMP3|A0A0B2RMP3_GLYSO Pumilio like 2; Found in the gene: LotjaGi3g1v0285500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:57700365..57705980) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTGTCTGAACTGGGTAGGAGGCCGGTGCTGGGTGGGAACGAGGGTTCTTTTGGTGATGAATTGGATAAGGAGATAGG GATGTTGCTTCGTGAGCAGCGGCGGCAGGATGTTGATGATCACGAGCGCGAGCTCAATCGGTATAGGAGTGGATCAGCGC CTCCAACTGTGGAGGGTTCTCTGAATGCAGTTGGAGGGTTGTTTGGAGGCGGCGGCGGCGGCGGTCTCGCTGGCCCATTT TCTGAATTTCCTGGGGCTAACCATGAGAATGATTTTGCGTCTGAGGAAGAGCTTAGGTCTGATCCGGCTTATCTTCAATA CTATTACTCCAATGTGAATTTGAATCCTCGACTTCCGCCTCCTTTGCTATCAAAGGAGGATTGGAGGTCTGCACAGAGAG CTTCAGTTCTTGGTGGAATTGGAGATAGGAGAAAAGTGAACAGGGTTGATGACAGTGGTGCTAGATCATTGTTTGCAACC CCTCCGGGGTTTAACTCGAGGAAGTCAGAGAGTGAGGCGGAGAACGAGAAAATGAGAGGTTCTGCTTCTGCAGAGTGGGG TGGTGATGGGCTCATTGGCTTGCCAGGCCTAGGTCTTGGGAGTAAACAAAAGAGCCTTGCAGAAATTTTCCAGGTAGCTT GCTTCTTTCATTGTGTTCTATTCTTGGCACCCTCACTCTTTAGCATCTATTCATTTTTGTGTTTTCACTTTTATCTTTGA CACATCATACGATATTGGTTTCTTAGGTTCAACATGTGGTTCATTGATGCATTTATATCTTTTTTTTAATGTTTGAACTT GTTAAATCTTGTGGGAAATAAAGTTTGATTTATTCAATGGTAGACGTTAAGATGCCTCTGTGGCATTATTATTTCTCTTT TAGCTTGTACAATGTCATTTCTATTGCTCATGGTGTTGGGAAGTAGCAGTATAAAATTCATGTGAAGCTTCATTGTTTTT TCATCAACTTCCACTGATGATGGGTTCCTTTTTGTTTGTCCAGTAGTGCTTGGCTTTTTTTAGTTTCATGCTGGCTGAAA TGTTTATACTTCTAGTTCTGTACCTTGCTCTGTTGCATCCTTTCTAAAATCTTATAGGCACTCACTGAAAACCTGTAAGA CCACGAATAATTCTGGAACTGACTGACTTGGCTCTGTGTGGGGTTTACATTCAGCACTTCTGAAGAATAATATCTTTTGG CACACTTGTGAACATCATAATATGGAAGCTTCTGAGCATATGTTGGTCATGGTCCTGCTGCAGCTTCTTTTTTGTCTGTT GCTGGATTCATATTTCAGACATTTCATCACATCATTTGTTTGGCTTAATCTTTATTTTATCTCTTAAACCTTGGAAGTTT GTGCCACAATTCATTAACTTTTTCTAGTAAAAATGTATAATAGGCTTCCTAATCAGTTGTAACTTGTAGTTGTACCAATG TTCATTTAGCTTTCTAGCATATACTACACACTCATTTGTAATTATTTAGCAATTTCCCTGTCATCTAATACTTTTTAACT TTTGTTTCCTTACCATTGTCCGCAAGGGCACATGTCACTGACATGTGCATTATGTCAGCATTCTTCACACACACAATTAT TTTCCTTTGTTTCTGTTCATTTTTTTGTACCCATAACTTATAATCAGCAATTGCGCAGGATGACATGGGACATAAGAACA CTATTGCTGGATTTCATTCTCGCCCAGCCAGCCGCAATGCATTTGATGAAAATGTTGATATTATGACTTCTGCTGAAGCA GACCTGGCTCATTTATGCCGTGATTCCTCAACCACTGATGCCTTAAGATCTGGAACAAATCTTCAGGGTTCATCTGCAAC CCAAAATATTGGCACACAAAGTTCATATAGTTATGCTGCTGCACTTGGCTCTCCCTTGTCACGAAGTACCACTCCTGATC CACAGCATGTTGCTAGAGCCCCCAGTCCTTGCCTCACACCTATTGGTGGTGGGAGAGTTGTTGCTGCTGAGAAGAGAGGC ATGGCCAATCCTGATGCATATAATGTTTCATCCGGCCTCAATGGGTCAGCTGATATTGTGGATGCATTATCTGGCATGAA TTTGTCAGCTGATGATGTATTGGATGGTGATAACCATTTCCCATCACAGGTTGAGTCAGATGTTGATAATCATAGGAGAT ATCTTTTTGGTTTGCAAGGTGGTCAGGATCATGGCAAGCAGCATGCATATTTAAAGAAGTCTGAGTCAGGACACATGCAA AAAACAGCTTACTCTGGTCCAGGTAAGAGCGGTGGGAACGGATCAGACATCAACAATTCCTTGGATAGGCAGATTGAGCT GCAAAAATCTGCTGTTTCTCCCAATAACTCATATTTCAAGGGATCACCTACATCTCCTTTTAATGGTGGAGGTGGTATGC CTGCTCAGTACCAGCCTTTAGATGGTACCAATTCATCATTCACTAACTATGGCCTGAGTGGGTATGCTGGAAATCCAGCA TTGGCATCCTTGATGGCTAGCCAACTTGGAACTGGTAATATGCCACCCCTATTTGAAAATGTTGCTGCAGCATCAGCAAT GGCTTCCCCTGGAATGGACTCTAGAATTCTTGGTGGTTTGGCTTCTGGCGTTGCTTCTCCATCTGATTTGCATATTCACG GAAGAATGGGAAATCAAATTTCAGGTGGTGCTCTCCAGGCTCCTTTTGTCGATCCCATGTATCTTCAGTACATGAGAGCA TCTGAATATGGTTCCCCACAACTGGCTGCACTTAACGACCCATCTGTGGATAGAAATTACTTGGGCAACTCGTACATGAA TTTACTTGAGCTTCAGAAAGCTTATCTTGGGAATCTGCTTTCACCTCATAAGTCTCAATACAATGTTCCACTGGGTGGTA AATCAGGTGGCTCCAATCATCATGGTTATTATGGAAATCCTGCGTATGGGGTTGGTTTGTCTTACCCTGGAAGTCCGATG GCAAACTCTTTATCCTCTTCTCCAGTTGGATCTGGCAGTCCTATTAGGCACAATGATCTGAATATGCATTTTGCGTCTGG AATGAGGAATGTAGCTGGTGTTATGGGACCATGGCATCTAGATACTGGAAACATGGATGAAAGCTTTGCATCGTCTCTGT TGGAAGAGTTTAAAAGCAACAAAACAAAATGTTTTGAGCTTTCTGAAATTTCCGGCCATGTTGTTGAATTCAGGTTTTTT TGCCTGTTAGTTGTTTTGGTGGTTAATTACTTAATTTTATATTGCTCTAATTTCATTTGAAAAAATTAATTTTATGAATT GTCTCTCATCTGCAGTGCTGATCAATATGGGAGCCGGTTTATCCAACAAAAGCTTGAAACAGCAACTACTGAAGAAAAAA CTATGGTTTATCAGGAAATTATGCCTCATGCTCTTGCGTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGGTA GATATTAATTAACATTCTCACTCTACTGCTTAAGTTGTTCGCTTTTAATGGATCTTGTTAGACTGACAATTTCCATCTGG CAGTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAGTTAGCCAACAAGCTATTTAGCCATGTTCTGACACTTAGCCT TCAAATGTATGGTTGTCGGGTCATCCAGAAGGTATTGACAGCTTTGTGTATAGTGATTTCTATGAATGACTGTGCATGGT CTTCTGAATATATCATCTGTTTATGTTTTTTTAATAAATATTTTATATATCTCTTTAGGCCATAGAAGTTGTTGATCTAG ACCAGAAGATAAAGATGGTTCAAGAGCTTGATGGTAATATCATGCGCTGTGTACGAGATCAGAATGGTAACCATGTTATT CAGAAGTGTATTGAATGTGTACCTGAAGATGCAATCGACTTTATTGTCTCAACCTTTTTTGATCAAGTTGTGACACTATC AACCCATCCATATGGTTGTCGGGTGATACAGGTAAAATTCTTCGGTACTTGTGTTATTCTTTGTATGTACTTAAATCCTT GAACATACAATGATGCCTTTTACATGGCAGAGAGTCCTGGAGCACTGCAAAGACCCTAACACACAGCAAAAAGTTATGGA TGAGATTTTAGGAGCAGTTAGCATGTTAGCCCAGGATCAGTACGGAAACTATGTTGTCCAGGTTTATAATTTATTCTTAC AACTTACAGTTAGGGCTTTTCTATTGCTGCAACTATTGACTTGAAAGTTGAAGCCTGACAGTTTCATGCTGTGTGTGGTA GTTGATGTTGTTGCTTGTGAATTCCCTGCAGCAATCTAGCTTTGTTGAGATGATAATACAGATCATCATAGTTTTTCTGC ACTTTCGGTTGATTATAATCCTTGTAGTTCACCTCTCATGTTTTTCTGAAATTATTCCACTGCACATTTTTTTTCTACAA TTGTTTTATTTACCTTTTATCTGAACATATGAATGTCTCCTCCTTTGTTATGAATATGATATACATTGACACAGCATTTT CCTTGTCAATGGTATGACGAAATTCAGTATTAGACTTTTTTATGTTTTTAATTGTGCATGTCTTGGAAGACATGTGTATT GTGTATAACTCCTTCCAAATTTTTATTGCTTGTGATATGAACTTCTAGTTGCTTCTCCAGCAAATACTTGGTACCTCATA CAAATGAAGCTTTTGTATTACTTGACTTTATATCCACATAGTATGTCATATATACAAGTCAAGCTGATCACTTGTCCTGT TTCATCCCCTCTTGAATAACAGCATGTACTTGAGCATGGGAAACCTCATGAGCGTTCAGCTATTATCAAGGAATTAACTG GCAATATTGTTCAAATGAGCCAACAGAAGTTTGCCTCAAATGTTGTGGAGAAGTGTTTGGCCTTTGGAGGTCCTGCTGAA CGCCAATTTCTTGTGAATGAGATGCTTGGATCCACGGATGAAAATGAGCCTCTTCAGGTTCTTTAAATTACCTTTATAAA CTACATTATCCCCCCTACTGTCTACTGATTATTCTGAGAACCTTAGAATTATCTCTCCAAAGATTTAAATATGAGTAGTT ATTACTATAATTAAAAACATGTTGACCTAGTCTTTTAAAAATAATATTGTCCATGCATCCACGCTGTAGAATGTTTGAAT ACATTGATGTGTTTTCACATATTTCGTGAATCTGTATTGAGCCTTGATTACTGAAGTTTATGATCTATAAAAAGATGGTA ATTTTATTCCTACAGTCCTTTTGATACAATTGATACACTTCGTAAGGATGCTCTAGATCCCCATCATATCTTTACGAAAC TGGTAGTAGTTTGTCATTCTTCAAATGCTAAATCGGGTTCCTTTTATTTACAGGCCATGATGAAAGATCAATTTGCTAAT TATGTTGTGCAAAAGGTGCTGGAGACTTGTGATGACCATCAGCGTGAGCTAATTCTTTCACGAATTAAAGTCCATCTGAA TGCATTGAAAAAATACACCTACGGAAAGCATATTGTCGCACGTGTAGAGAAACTTGTTGCTGCTGGAGGTACTTAATTCC TCATTTGCACTATCACTTATTTTGATATATTTCTGCATCATGTGTTTGGCTTAGGTGTTTGTTCTTTTGACATATGGACA TGAAGTGAGCTGCTAA
CDS sequence (LotjaGi3g1v0285500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAATCCTGATGCATATAATGTTTCATCCGGCCTCAATGGGTCAGCTGATATTGTGGATGCATTATCTGGCATGAA TTTGTCAGCTGATGATGTATTGGATGGTGATAACCATTTCCCATCACAGGTTGAGTCAGATGTTGATAATCATAGGAGAT ATCTTTTTGGTTTGCAAGGTGGTCAGGATCATGGCAAGCAGCATGCATATTTAAAGAAGTCTGAGTCAGGACACATGCAA AAAACAGCTTACTCTGGTCCAGGTAAGAGCGGTGGGAACGGATCAGACATCAACAATTCCTTGGATAGGCAGATTGAGCT GCAAAAATCTGCTGTTTCTCCCAATAACTCATATTTCAAGGGATCACCTACATCTCCTTTTAATGGTGGAGGTGGTATGC CTGCTCAGTACCAGCCTTTAGATGGTACCAATTCATCATTCACTAACTATGGCCTGAGTGGGTATGCTGGAAATCCAGCA TTGGCATCCTTGATGGCTAGCCAACTTGGAACTGGTAATATGCCACCCCTATTTGAAAATGTTGCTGCAGCATCAGCAAT GGCTTCCCCTGGAATGGACTCTAGAATTCTTGGTGGTTTGGCTTCTGGCGTTGCTTCTCCATCTGATTTGCATATTCACG GAAGAATGGGAAATCAAATTTCAGGTGGTGCTCTCCAGGCTCCTTTTGTCGATCCCATGTATCTTCAGTACATGAGAGCA TCTGAATATGGTTCCCCACAACTGGCTGCACTTAACGACCCATCTGTGGATAGAAATTACTTGGGCAACTCGTACATGAA TTTACTTGAGCTTCAGAAAGCTTATCTTGGGAATCTGCTTTCACCTCATAAGTCTCAATACAATGTTCCACTGGGTGGTA AATCAGGTGGCTCCAATCATCATGGTTATTATGGAAATCCTGCGTATGGGGTTGGTTTGTCTTACCCTGGAAGTCCGATG GCAAACTCTTTATCCTCTTCTCCAGTTGGATCTGGCAGTCCTATTAGGCACAATGATCTGAATATGCATTTTGCGTCTGG AATGAGGAATGTAGCTGGTGTTATGGGACCATGGCATCTAGATACTGGAAACATGGATGAAAGCTTTGCATCGTCTCTGT TGGAAGAGTTTAAAAGCAACAAAACAAAATGTTTTGAGCTTTCTGAAATTTCCGGCCATGTTGTTGAATTCAGTGCTGAT CAATATGGGAGCCGGTTTATCCAACAAAAGCTTGAAACAGCAACTACTGAAGAAAAAACTATGGTTTATCAGGAAATTAT GCCTCATGCTCTTGCGTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCATCCC AGAGAAGAGAGTTAGCCAACAAGCTATTTAGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGTCGGGTCATCCAG AAGGCCATAGAAGTTGTTGATCTAGACCAGAAGATAAAGATGGTTCAAGAGCTTGATGGTAATATCATGCGCTGTGTACG AGATCAGAATGGTAACCATGTTATTCAGAAGTGTATTGAATGTGTACCTGAAGATGCAATCGACTTTATTGTCTCAACCT TTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGTTGTCGGGTGATACAGAGAGTCCTGGAGCACTGCAAAGAC CCTAACACACAGCAAAAAGTTATGGATGAGATTTTAGGAGCAGTTAGCATGTTAGCCCAGGATCAGTACGGAAACTATGT TGTCCAGCATGTACTTGAGCATGGGAAACCTCATGAGCGTTCAGCTATTATCAAGGAATTAACTGGCAATATTGTTCAAA TGAGCCAACAGAAGTTTGCCTCAAATGTTGTGGAGAAGTGTTTGGCCTTTGGAGGTCCTGCTGAACGCCAATTTCTTGTG AATGAGATGCTTGGATCCACGGATGAAAATGAGCCTCTTCAGGCCATGATGAAAGATCAATTTGCTAATTATGTTGTGCA AAAGGTGCTGGAGACTTGTGATGACCATCAGCGTGAGCTAATTCTTTCACGAATTAAAGTCCATCTGAATGCATTGAAAA AATACACCTACGGAAAGCATATTGTCGCACGTGTAGAGAAACTTGTTGCTGCTGGAGGTGTTTGTTCTTTTGACATATGG ACATGA
Protein sequence (LotjaGi3g1v0285500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANPDAYNVSSGLNGSADIVDALSGMNLSADDVLDGDNHFPSQVESDVDNHRRYLFGLQGGQDHGKQHAYLKKSESGHMQ KTAYSGPGKSGGNGSDINNSLDRQIELQKSAVSPNNSYFKGSPTSPFNGGGGMPAQYQPLDGTNSSFTNYGLSGYAGNPA LASLMASQLGTGNMPPLFENVAAASAMASPGMDSRILGGLASGVASPSDLHIHGRMGNQISGGALQAPFVDPMYLQYMRA SEYGSPQLAALNDPSVDRNYLGNSYMNLLELQKAYLGNLLSPHKSQYNVPLGGKSGGSNHHGYYGNPAYGVGLSYPGSPM ANSLSSSPVGSGSPIRHNDLNMHFASGMRNVAGVMGPWHLDTGNMDESFASSLLEEFKSNKTKCFELSEISGHVVEFSAD QYGSRFIQQKLETATTEEKTMVYQEIMPHALALMTDVFGNYVVQKFFEHGLASQRRELANKLFSHVLTLSLQMYGCRVIQ KAIEVVDLDQKIKMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKD PNTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSAIIKELTGNIVQMSQQKFASNVVEKCLAFGGPAERQFLV NEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGGVCSFDIW T
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 716 | 713 | 0.0 | – | |
| PANTHER | 4 | 716 | 713 | 0.0 | – | |
| Pfam | 8 | 388 | 381 | 2.0E-141 | ||
| MobiDBLite | 59 | 99 | 41 | - | – | |
| MobiDBLite | 78 | 99 | 22 | - | – | |
| MobiDBLite | 111 | 140 | 30 | - | – | |
| Gene3D | 369 | 712 | 344 | 3.5E-142 | ||
| ProSiteProfiles | 369 | 709 | 341 | 132.745 | ||
| SUPERFAMILY | 372 | 706 | 335 | 1.07E-119 | ||
| CDD | 385 | 705 | 321 | 1.74813E-175 | ||
| SMART | 389 | 424 | 36 | 2.4E-5 | ||
| Pfam | 389 | 419 | 31 | 1.1E-6 | ||
| ProSiteProfiles | 389 | 424 | 36 | 11.3 | ||
| SMART | 425 | 460 | 36 | 2.1E-6 | ||
| ProSiteProfiles | 425 | 460 | 36 | 10.46 | ||
| Pfam | 428 | 456 | 29 | 2.4E-6 | ||
| ProSiteProfiles | 461 | 496 | 36 | 10.577 | ||
| SMART | 461 | 496 | 36 | 4.5E-7 | ||
| Pfam | 462 | 491 | 30 | 1.4E-5 | ||
| SMART | 497 | 532 | 36 | 4.5E-7 | ||
| ProSiteProfiles | 497 | 532 | 36 | 9.924 | ||
| Pfam | 502 | 530 | 29 | 5.3E-6 | ||
| ProSiteProfiles | 533 | 569 | 37 | 10.88 | ||
| SMART | 533 | 569 | 37 | 3.2E-7 | ||
| Pfam | 534 | 565 | 32 | 4.0E-9 | ||
| SMART | 570 | 605 | 36 | 1.8E-6 | ||
| ProSiteProfiles | 570 | 605 | 36 | 12.117 | ||
| Pfam | 573 | 601 | 29 | 1.5E-6 | ||
| ProSiteProfiles | 606 | 641 | 36 | 9.69 | ||
| SMART | 606 | 641 | 36 | 8.6E-8 | ||
| Pfam | 607 | 639 | 33 | 1.6E-5 | ||
| ProSiteProfiles | 642 | 683 | 42 | 10.017 | ||
| SMART | 648 | 683 | 36 | 8.7E-7 | ||
| Pfam | 656 | 682 | 27 | 1.6E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi3g1v0285500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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