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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0285500 |
| Transcript ID | LotjaGi3g1v0285500.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|A0A0B2RMP3|A0A0B2RMP3_GLYSO Pumilio like 2; Found in the gene: LotjaGi3g1v0285500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:57702020..57705980) extracted from Lotus japonicus Gifu genome v1.2.
CAGGATGACATGGGACATAAGAACACTATTGCTGGATTTCATTCTCGCCCAGCCAGCCGCAATGCATTTGATGAAAATGT TGATATTATGACTTCTGCTGAAGCAGACCTGGCTCATTTATGCCGTGATTCCTCAACCACTGATGCCTTAAGATCTGGAA CAAATCTTCAGGGTTCATCTGCAACCCAAAATATTGGCACACAAAGTTCATATAGTTATGCTGCTGCACTTGGCTCTCCC TTGTCACGAAGTACCACTCCTGATCCACAGCATGTTGCTAGAGCCCCCAGTCCTTGCCTCACACCTATTGGTGGTGGGAG AGTTGTTGCTGCTGAGAAGAGAGGCATGGCCAATCCTGATGCATATAATGTTTCATCCGGCCTCAATGGGTCAGCTGATA TTGTGGATGCATTATCTGGCATGAATTTGTCAGCTGATGATGTATTGGATGGTGATAACCATTTCCCATCACAGGTTGAG TCAGATGTTGATAATCATAGGAGATATCTTTTTGGTTTGCAAGGTGGTCAGGATCATGGCAAGCAGCATGCATATTTAAA GAAGTCTGAGTCAGGACACATGCAAAAAACAGCTTACTCTGGTCCAGGTAAGAGCGGTGGGAACGGATCAGACATCAACA ATTCCTTGGATAGGCAGATTGAGCTGCAAAAATCTGCTGTTTCTCCCAATAACTCATATTTCAAGGGATCACCTACATCT CCTTTTAATGGTGGAGGTGGTATGCCTGCTCAGTACCAGCCTTTAGATGGTACCAATTCATCATTCACTAACTATGGCCT GAGTGGGTATGCTGGAAATCCAGCATTGGCATCCTTGATGGCTAGCCAACTTGGAACTGGTAATATGCCACCCCTATTTG AAAATGTTGCTGCAGCATCAGCAATGGCTTCCCCTGGAATGGACTCTAGAATTCTTGGTGGTTTGGCTTCTGGCGTTGCT TCTCCATCTGATTTGCATATTCACGGAAGAATGGGAAATCAAATTTCAGGTGGTGCTCTCCAGGCTCCTTTTGTCGATCC CATGTATCTTCAGTACATGAGAGCATCTGAATATGGTTCCCCACAACTGGCTGCACTTAACGACCCATCTGTGGATAGAA ATTACTTGGGCAACTCGTACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGGAATCTGCTTTCACCTCATAAGTCT CAATACAATGTTCCACTGGGTGGTAAATCAGGTGGCTCCAATCATCATGGTTATTATGGAAATCCTGCGTATGGGGTTGG TTTGTCTTACCCTGGAAGTCCGATGGCAAACTCTTTATCCTCTTCTCCAGTTGGATCTGGCAGTCCTATTAGGCACAATG ATCTGAATATGCATTTTGCGTCTGGAATGAGGAATGTAGCTGGTGTTATGGGACCATGGCATCTAGATACTGGAAACATG GATGAAAGCTTTGCATCGTCTCTGTTGGAAGAGTTTAAAAGCAACAAAACAAAATGTTTTGAGCTTTCTGAAATTTCCGG CCATGTTGTTGAATTCAGGTTTTTTTGCCTGTTAGTTGTTTTGGTGGTTAATTACTTAATTTTATATTGCTCTAATTTCA TTTGAAAAAATTAATTTTATGAATTGTCTCTCATCTGCAGTGCTGATCAATATGGGAGCCGGTTTATCCAACAAAAGCTT GAAACAGCAACTACTGAAGAAAAAACTATGGTTTATCAGGAAATTATGCCTCATGCTCTTGCGTTGATGACTGATGTCTT TGGTAATTATGTGGTTCAAAAGGTAGATATTAATTAACATTCTCACTCTACTGCTTAAGTTGTTCGCTTTTAATGGATCT TGTTAGACTGACAATTTCCATCTGGCAGTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAGTTAGCCAACAAGCTAT TTAGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGTCGGGTCATCCAGAAGGTATTGACAGCTTTGTGTATAGTG ATTTCTATGAATGACTGTGCATGGTCTTCTGAATATATCATCTGTTTATGTTTTTTTAATAAATATTTTATATATCTCTT TAGGCCATAGAAGTTGTTGATCTAGACCAGAAGATAAAGATGGTTCAAGAGCTTGATGGTAATATCATGCGCTGTGTACG AGATCAGAATGGTAACCATGTTATTCAGAAGTGTATTGAATGTGTACCTGAAGATGCAATCGACTTTATTGTCTCAACCT TTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGTTGTCGGGTGATACAGGTAAAATTCTTCGGTACTTGTGTT ATTCTTTGTATGTACTTAAATCCTTGAACATACAATGATGCCTTTTACATGGCAGAGAGTCCTGGAGCACTGCAAAGACC CTAACACACAGCAAAAAGTTATGGATGAGATTTTAGGAGCAGTTAGCATGTTAGCCCAGGATCAGTACGGAAACTATGTT GTCCAGGTTTATAATTTATTCTTACAACTTACAGTTAGGGCTTTTCTATTGCTGCAACTATTGACTTGAAAGTTGAAGCC TGACAGTTTCATGCTGTGTGTGGTAGTTGATGTTGTTGCTTGTGAATTCCCTGCAGCAATCTAGCTTTGTTGAGATGATA ATACAGATCATCATAGTTTTTCTGCACTTTCGGTTGATTATAATCCTTGTAGTTCACCTCTCATGTTTTTCTGAAATTAT TCCACTGCACATTTTTTTTCTACAATTGTTTTATTTACCTTTTATCTGAACATATGAATGTCTCCTCCTTTGTTATGAAT ATGATATACATTGACACAGCATTTTCCTTGTCAATGGTATGACGAAATTCAGTATTAGACTTTTTTATGTTTTTAATTGT GCATGTCTTGGAAGACATGTGTATTGTGTATAACTCCTTCCAAATTTTTATTGCTTGTGATATGAACTTCTAGTTGCTTC TCCAGCAAATACTTGGTACCTCATACAAATGAAGCTTTTGTATTACTTGACTTTATATCCACATAGTATGTCATATATAC AAGTCAAGCTGATCACTTGTCCTGTTTCATCCCCTCTTGAATAACAGCATGTACTTGAGCATGGGAAACCTCATGAGCGT TCAGCTATTATCAAGGAATTAACTGGCAATATTGTTCAAATGAGCCAACAGAAGTTTGCCTCAAATGTTGTGGAGAAGTG TTTGGCCTTTGGAGGTCCTGCTGAACGCCAATTTCTTGTGAATGAGATGCTTGGATCCACGGATGAAAATGAGCCTCTTC AGGTTCTTTAAATTACCTTTATAAACTACATTATCCCCCCTACTGTCTACTGATTATTCTGAGAACCTTAGAATTATCTC TCCAAAGATTTAAATATGAGTAGTTATTACTATAATTAAAAACATGTTGACCTAGTCTTTTAAAAATAATATTGTCCATG CATCCACGCTGTAGAATGTTTGAATACATTGATGTGTTTTCACATATTTCGTGAATCTGTATTGAGCCTTGATTACTGAA GTTTATGATCTATAAAAAGATGGTAATTTTATTCCTACAGTCCTTTTGATACAATTGATACACTTCGTAAGGATGCTCTA GATCCCCATCATATCTTTACGAAACTGGTAGTAGTTTGTCATTCTTCAAATGCTAAATCGGGTTCCTTTTATTTACAGGC CATGATGAAAGATCAATTTGCTAATTATGTTGTGCAAAAGGTGCTGGAGACTTGTGATGACCATCAGCGTGAGCTAATTC TTTCACGAATTAAAGTCCATCTGAATGCATTGAAAAAATACACCTACGGAAAGCATATTGTCGCACGTGTAGAGAAACTT GTTGCTGCTGGAGGTACTTAATTCCTCATTTGCACTATCACTTATTTTGATATATTTCTGCATCATGTGTTTGGCTTAGG TGTTTGTTCTTTTGACATATGGACATGAAGTGAGCTGCTAA
CDS sequence (LotjaGi3g1v0285500.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGACATAAGAACACTATTGCTGGATTTCATTCTCGCCCAGCCAGCCGCAATGCATTTGATGAAAATGTTGATATTAT GACTTCTGCTGAAGCAGACCTGGCTCATTTATGCCGTGATTCCTCAACCACTGATGCCTTAAGATCTGGAACAAATCTTC AGGGTTCATCTGCAACCCAAAATATTGGCACACAAAGTTCATATAGTTATGCTGCTGCACTTGGCTCTCCCTTGTCACGA AGTACCACTCCTGATCCACAGCATGTTGCTAGAGCCCCCAGTCCTTGCCTCACACCTATTGGTGGTGGGAGAGTTGTTGC TGCTGAGAAGAGAGGCATGGCCAATCCTGATGCATATAATGTTTCATCCGGCCTCAATGGGTCAGCTGATATTGTGGATG CATTATCTGGCATGAATTTGTCAGCTGATGATGTATTGGATGGTGATAACCATTTCCCATCACAGGTTGAGTCAGATGTT GATAATCATAGGAGATATCTTTTTGGTTTGCAAGGTGGTCAGGATCATGGCAAGCAGCATGCATATTTAAAGAAGTCTGA GTCAGGACACATGCAAAAAACAGCTTACTCTGGTCCAGGTAAGAGCGGTGGGAACGGATCAGACATCAACAATTCCTTGG ATAGGCAGATTGAGCTGCAAAAATCTGCTGTTTCTCCCAATAACTCATATTTCAAGGGATCACCTACATCTCCTTTTAAT GGTGGAGGTGGTATGCCTGCTCAGTACCAGCCTTTAGATGGTACCAATTCATCATTCACTAACTATGGCCTGAGTGGGTA TGCTGGAAATCCAGCATTGGCATCCTTGATGGCTAGCCAACTTGGAACTGGTAATATGCCACCCCTATTTGAAAATGTTG CTGCAGCATCAGCAATGGCTTCCCCTGGAATGGACTCTAGAATTCTTGGTGGTTTGGCTTCTGGCGTTGCTTCTCCATCT GATTTGCATATTCACGGAAGAATGGGAAATCAAATTTCAGGTGGTGCTCTCCAGGCTCCTTTTGTCGATCCCATGTATCT TCAGTACATGAGAGCATCTGAATATGGTTCCCCACAACTGGCTGCACTTAACGACCCATCTGTGGATAGAAATTACTTGG GCAACTCGTACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGGAATCTGCTTTCACCTCATAAGTCTCAATACAAT GTTCCACTGGGTGGTAAATCAGGTGGCTCCAATCATCATGGTTATTATGGAAATCCTGCGTATGGGGTTGGTTTGTCTTA CCCTGGAAGTCCGATGGCAAACTCTTTATCCTCTTCTCCAGTTGGATCTGGCAGTCCTATTAGGCACAATGATCTGAATA TGCATTTTGCGTCTGGAATGAGGAATGTAGCTGGTGTTATGGGACCATGGCATCTAGATACTGGAAACATGGATGAAAGC TTTGCATCGTCTCTGTTGGAAGAGTTTAAAAGCAACAAAACAAAATGTTTTGAGCTTTCTGAAATTTCCGGCCATGTTGT TGAATTCAGTGCTGATCAATATGGGAGCCGGTTTATCCAACAAAAGCTTGAAACAGCAACTACTGAAGAAAAAACTATGG TTTATCAGGAAATTATGCCTCATGCTCTTGCGTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAG CATGGACTTGCATCCCAGAGAAGAGAGTTAGCCAACAAGCTATTTAGCCATGTTCTGACACTTAGCCTTCAAATGTATGG TTGTCGGGTCATCCAGAAGGCCATAGAAGTTGTTGATCTAGACCAGAAGATAAAGATGGTTCAAGAGCTTGATGGTAATA TCATGCGCTGTGTACGAGATCAGAATGGTAACCATGTTATTCAGAAGTGTATTGAATGTGTACCTGAAGATGCAATCGAC TTTATTGTCTCAACCTTTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGTTGTCGGGTGATACAGAGAGTCCT GGAGCACTGCAAAGACCCTAACACACAGCAAAAAGTTATGGATGAGATTTTAGGAGCAGTTAGCATGTTAGCCCAGGATC AGTACGGAAACTATGTTGTCCAGCATGTACTTGAGCATGGGAAACCTCATGAGCGTTCAGCTATTATCAAGGAATTAACT GGCAATATTGTTCAAATGAGCCAACAGAAGTTTGCCTCAAATGTTGTGGAGAAGTGTTTGGCCTTTGGAGGTCCTGCTGA ACGCCAATTTCTTGTGAATGAGATGCTTGGATCCACGGATGAAAATGAGCCTCTTCAGGCCATGATGAAAGATCAATTTG CTAATTATGTTGTGCAAAAGGTGCTGGAGACTTGTGATGACCATCAGCGTGAGCTAATTCTTTCACGAATTAAAGTCCAT CTGAATGCATTGAAAAAATACACCTACGGAAAGCATATTGTCGCACGTGTAGAGAAACTTGTTGCTGCTGGAGGTGTTTG TTCTTTTGACATATGGACATGA
Protein sequence (LotjaGi3g1v0285500.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGHKNTIAGFHSRPASRNAFDENVDIMTSAEADLAHLCRDSSTTDALRSGTNLQGSSATQNIGTQSSYSYAAALGSPLSR STTPDPQHVARAPSPCLTPIGGGRVVAAEKRGMANPDAYNVSSGLNGSADIVDALSGMNLSADDVLDGDNHFPSQVESDV DNHRRYLFGLQGGQDHGKQHAYLKKSESGHMQKTAYSGPGKSGGNGSDINNSLDRQIELQKSAVSPNNSYFKGSPTSPFN GGGGMPAQYQPLDGTNSSFTNYGLSGYAGNPALASLMASQLGTGNMPPLFENVAAASAMASPGMDSRILGGLASGVASPS DLHIHGRMGNQISGGALQAPFVDPMYLQYMRASEYGSPQLAALNDPSVDRNYLGNSYMNLLELQKAYLGNLLSPHKSQYN VPLGGKSGGSNHHGYYGNPAYGVGLSYPGSPMANSLSSSPVGSGSPIRHNDLNMHFASGMRNVAGVMGPWHLDTGNMDES FASSLLEEFKSNKTKCFELSEISGHVVEFSADQYGSRFIQQKLETATTEEKTMVYQEIMPHALALMTDVFGNYVVQKFFE HGLASQRRELANKLFSHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAID FIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPNTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSAIIKELT GNIVQMSQQKFASNVVEKCLAFGGPAERQFLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDHQRELILSRIKVH LNALKKYTYGKHIVARVEKLVAAGGVCSFDIWT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 828 | 827 | 0.0 | – | |
| PANTHER | 2 | 828 | 827 | 0.0 | – | |
| MobiDBLite | 75 | 96 | 22 | - | – | |
| Pfam | 91 | 500 | 410 | 1.3E-152 | ||
| MobiDBLite | 171 | 211 | 41 | - | – | |
| MobiDBLite | 190 | 211 | 22 | - | – | |
| MobiDBLite | 223 | 252 | 30 | - | – | |
| ProSiteProfiles | 481 | 821 | 341 | 132.745 | ||
| Gene3D | 481 | 824 | 344 | 4.9E-142 | ||
| SUPERFAMILY | 484 | 818 | 335 | 1.12E-119 | ||
| CDD | 497 | 817 | 321 | 1.88895E-176 | ||
| SMART | 501 | 536 | 36 | 2.4E-5 | ||
| ProSiteProfiles | 501 | 536 | 36 | 11.3 | ||
| Pfam | 501 | 531 | 31 | 1.3E-6 | ||
| SMART | 537 | 572 | 36 | 2.1E-6 | ||
| ProSiteProfiles | 537 | 572 | 36 | 10.46 | ||
| Pfam | 540 | 568 | 29 | 2.8E-6 | ||
| SMART | 573 | 608 | 36 | 4.5E-7 | ||
| ProSiteProfiles | 573 | 608 | 36 | 10.577 | ||
| Pfam | 574 | 603 | 30 | 1.7E-5 | ||
| SMART | 609 | 644 | 36 | 4.5E-7 | ||
| ProSiteProfiles | 609 | 644 | 36 | 9.924 | ||
| Pfam | 614 | 642 | 29 | 6.2E-6 | ||
| ProSiteProfiles | 645 | 681 | 37 | 10.88 | ||
| SMART | 645 | 681 | 37 | 3.2E-7 | ||
| Pfam | 646 | 677 | 32 | 4.7E-9 | ||
| ProSiteProfiles | 682 | 717 | 36 | 12.117 | ||
| SMART | 682 | 717 | 36 | 1.8E-6 | ||
| Pfam | 685 | 713 | 29 | 1.8E-6 | ||
| ProSiteProfiles | 718 | 753 | 36 | 9.69 | ||
| SMART | 718 | 753 | 36 | 8.6E-8 | ||
| Pfam | 719 | 751 | 33 | 1.9E-5 | ||
| ProSiteProfiles | 754 | 795 | 42 | 10.017 | ||
| SMART | 760 | 795 | 36 | 8.7E-7 | ||
| Pfam | 768 | 794 | 27 | 1.9E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi3g1v0285500.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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