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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0285800 |
| Transcript ID | LotjaGi3g1v0285800.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:57773216..57777183) extracted from Lotus japonicus Gifu genome v1.2.
CAGGATGACATGGGACATAAGACCACTATTGCTGGATTTCATTCTCGTCCAGCCAGCCGCAATGCATTTGATGAAAATGT TGATATTATGACTTCTGCTGAAGCAGACCTCGCCGATTTATGCCGTGATTCCTCAGCCACTGATGCCTTAAGATCTGGAA CAAATCTTCAGGGGTCGTCTGCAACCCAAAATAATGGCACGCAAAGTTCATATACTTATGCTGCTGCACTTGGCTCTCCC TTGTCACGTAGTACTACTCCTGATCCACAGCATGTTGCTAGAGCTCCCAGTCCTTGCCTCACACCTATTGGTGGCGGGAG AGTTGCTGCTGCTGAGAAGAGAGGCATGGCCAATCCTGATGCATATAATGTTTCAACTGGCCTCAATGGGTCAGCAGATA TTGTGGATGCACTATCTGGCATGAACTTGTCAGCTGATGATGTGTTGGATGGGGATAACCATTTCCCATCACAGGTTGAG TCCGATGTTGATAATCATAGGAGATATCTTTTTGGTTTGCAAGGTGGTCAGGATCATGGCAAGCAGCATGCATATTTAAA GAAGTCTGAGTCAGGACACATGCAAAAAACAGCTTACTCTGGTTCAGGTAGGAGCGGTGGGAACGGGCCAGACATCAACA ATTCCTTGGATAGGCAGATTGAGCTGCAAAAATCTGCTGTTTCTCCCAATAACTCATATTTCAAGGGATCACCTACATCT CCTTTTAATGGTGGAGGTGGTATGCCTGCTCAGTACCAGCCTTTAGATGGTACCAATTCATCATTCACTAACTATGGCCT GAGTGGGTATGCTGGAAATCCAGCATTGGCATCCTTGATGGCTAGCCAACTTGGAACTGGTAATATGCCACCCCTATTTG AAAATGTTGCTGCAGCATCAACAATGGCTTCCCCTGGAATGGACTCTAGAATCTTTGGTGGTTTGGCTTCTGGCATTGCT TCTCCATCTGATGTGCATACTCACGGAAGAATGGGAAATCAAATTTCAGGTGGTGCTCTCCAGGCTCCTTTTGTCGATCC CATGTATCTTCAGTACATGAGAGCATCTGAATATGGTTCCCCACAACTGGCTGCACTTAACGATCCATCTGTGGATAGAA ATTACTTGGGCAACTCGTACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGGAATCTGCTTTCACCTCATAAGTCT CAATACAATGTTCCACTGGGTGGTAAATCAGGTGGCTCCAATCATCATGGTTATTATGGAAATCCTGCATATGGGGTTGG TTTGTCTTACCCTGGAAGTCCGATGGCAAACTCTTTATCCTCTTCTCCAGTTGGATCTGGCAGTCCTATTAGGCACAATG ATCTGAATATGCATTTTGCTTCTGGAATGAGGAATGTAGCTGGGGTTATGGGTCCATGGCATCTAGATAGTGGAAACATG GATGAAAGCTTTGCATCGTCTCTGTTGGAAGAGTTTAAAAGCAACAAAACAAAATGTTTCGAGCTTTCTGAAATTTCTGG CCATGTTGTTGAATTCAGGTTATTTTTTTCTGCCTGTTGGTTGTTTTGGTGTTAATTTTATATTGCTATACTTTCTTTTG AAAAAATAAATTTAATGAATAGTCTCTCATCTGCAGTGCTGATCAATATGGGAGCCGGTTTATCCAACAAAAGCTGGAAA CAGCAACTACTGAAGAAAAGACCATGGTTTATCAGGAAATTATGCCTCATGCTCTTGCATTGATGACTGATGTCTTTGGT AATTATGTGGTTCAGAAGGTAGATATTAATTAACATTCTCACTCTGTACTGCTTGTGCACACTTGAGTCGCTCTCTTTTA ATGGATCTTGTTAGACTGACAATTTCCATCGGGCAGTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAGTTAGCCAA CAAGCTTTTTAGCCATGTTCTGGCACTTAGCCTTCAAATGTATGGTTGTCGGGTCATCCAGAAGGTATTGACAACTTTGT GTATAGTGATTTCTATGAATGACTGTGCATGGTCTTCTGAATATGTCATCTGTTTATGTTTTTTTAACAAATATTTTATA TATCTCTTTAGGCCATAGAAGTTGTTGATCTAGACCAGAAGATAAATATGGTTCAGGAGCTTGATGGTAATATCATGCGC TGTGTACGAGATCAGAATGGTAACCATGTTATTCAGAAGTGTATTGAATGTGTACCTGAAGATGCAATCGACTTTATTGT CTCAACCTTTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGATGTCGGGTGATACAGGTAAAATTCTTCGGTA CTTGTGTTATTCTTTGTATGTACTTGAAGTCCTTGAACATACAATGATGCCTTTTATATGGCAGAGAGTCCTGGAGCACT GCAAAGATCCTAACACACAGCAAAAAGTTATGGATGAGATTTTAGGGGCAGTTAGCATGTTAGCCCAGGATCAGTACGGA AACTATGTTGTCCAGGTTTATAATTTATTTTTTACAACTACAGTTTGGGCTTTTCTATTGCCGCAACTATTGACTTGAAA GTTGAAGCCCTACAGTTTCATGCTGTGTGTGGTAGTTGATGTTGTTGCTTGTGGATTCCCTGCAGCAATCTAGCTTTGTT GAGATGATAATACAGATCATCATAGTTTTTCTGCACTTTCGGTTGATTATAATCCTTGCAGTTCATCCCTCATGTTTTTC TTAAATTATTCCCCTGCACATTTTTTTTCTACATTTTTCATTTACCTTTTATCTGAACATAGGCATGTCTCCTTCTTTGT TATGAATATGATATACATTGACACAGCATTTTCCTTGTCAATGGTCTGACGAAATTCAGTATTACACTTTTTTATGTTTT TTATTGTGCATGTCTTGGAAGACATGTACTCTTCAGTCATAATTGTTTGATCACTTGATGTTATACTATGCAGTCCTTTC TACTTTATGTGTATTGTGTATACCTCCTTCCAAACTTTGTTGCTTGTGATATGAACTTCTAGTTCCTTCTCCAGCAAATA CTTGGTACCTCATACAAATGAAGCTTTTGTATTACTTGACTTTATATTCGTATAGCATGTCATATATACAAGTCAGTTAG TCAGCTGATCACTTGTTCTGTTTCATCCCCTCTTGGATAACAGCATGTACTTGAGCATGGGAAACCTCATGAGCGTTCAG CTATTATCAAGGAATTAGCTGGCAATATTGTTCAAATGAGCCAACAGAAGTTTGCCTCAAATGTTGTGGAGAAGTGTTTG GCCTTTGGAGGTCCTGCTGAACGCCAATTCCTTGTGAATGAGATGCTCGGATCCACGGATGAAAATGAGCCTCTTCAGGT TCTTTAAATTACCTTTATAAACTACATAATCCCCCCTACTGTCTACTGATTATTCTGAGAACTTTAGAATTATCTCTCCA AAGATTTAAATGTGAGTAGTTCTTACTATAATTAAAAACATGTTGACCTAGTCTTTTTAAAAATAATATTATCCATGCAT CCACACTGTAGAATGTTTGAATAGATTGATGTGTTTTCACATATTTCGTGAATCTGCATTGAACCTTGATCACTGAAGTT TATGATCTATAAAAAGATGGTAATTTTATTTATAGAGTCCTTTTAATACAATTGATACACTTCGTAAGGATGCTCTAGAT CCCCATCATATCTTTATGAAACTGGTAGTAGTTTGTCATTCTTGCAAATGCTAAATCAGGTTCTTCTTATATACAGGCCA TGATGAAAGATCAATTTGCTAATTATGTTGTGCAAAAGGTGCTGGAGACTTGTGATGACCATCAGCGTGAGCTAATTCTT TCACGAATTAAAGTCCATTTGAATGCATTGAAAAAATACACCTACGGAAAGCATATTGTCGCACGTGTAGAGAAACTTGT TGCTGCTGGAGGTACTTAATTCCTCATATGCGCTATCACTTATTTTGA
CDS sequence (LotjaGi3g1v0285800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGACATAAGACCACTATTGCTGGATTTCATTCTCGTCCAGCCAGCCGCAATGCATTTGATGAAAATGTTGATATTAT GACTTCTGCTGAAGCAGACCTCGCCGATTTATGCCGTGATTCCTCAGCCACTGATGCCTTAAGATCTGGAACAAATCTTC AGGGGTCGTCTGCAACCCAAAATAATGGCACGCAAAGTTCATATACTTATGCTGCTGCACTTGGCTCTCCCTTGTCACGT AGTACTACTCCTGATCCACAGCATGTTGCTAGAGCTCCCAGTCCTTGCCTCACACCTATTGGTGGCGGGAGAGTTGCTGC TGCTGAGAAGAGAGGCATGGCCAATCCTGATGCATATAATGTTTCAACTGGCCTCAATGGGTCAGCAGATATTGTGGATG CACTATCTGGCATGAACTTGTCAGCTGATGATGTGTTGGATGGGGATAACCATTTCCCATCACAGGTTGAGTCCGATGTT GATAATCATAGGAGATATCTTTTTGGTTTGCAAGGTGGTCAGGATCATGGCAAGCAGCATGCATATTTAAAGAAGTCTGA GTCAGGACACATGCAAAAAACAGCTTACTCTGGTTCAGGTAGGAGCGGTGGGAACGGGCCAGACATCAACAATTCCTTGG ATAGGCAGATTGAGCTGCAAAAATCTGCTGTTTCTCCCAATAACTCATATTTCAAGGGATCACCTACATCTCCTTTTAAT GGTGGAGGTGGTATGCCTGCTCAGTACCAGCCTTTAGATGGTACCAATTCATCATTCACTAACTATGGCCTGAGTGGGTA TGCTGGAAATCCAGCATTGGCATCCTTGATGGCTAGCCAACTTGGAACTGGTAATATGCCACCCCTATTTGAAAATGTTG CTGCAGCATCAACAATGGCTTCCCCTGGAATGGACTCTAGAATCTTTGGTGGTTTGGCTTCTGGCATTGCTTCTCCATCT GATGTGCATACTCACGGAAGAATGGGAAATCAAATTTCAGGTGGTGCTCTCCAGGCTCCTTTTGTCGATCCCATGTATCT TCAGTACATGAGAGCATCTGAATATGGTTCCCCACAACTGGCTGCACTTAACGATCCATCTGTGGATAGAAATTACTTGG GCAACTCGTACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGGAATCTGCTTTCACCTCATAAGTCTCAATACAAT GTTCCACTGGGTGGTAAATCAGGTGGCTCCAATCATCATGGTTATTATGGAAATCCTGCATATGGGGTTGGTTTGTCTTA CCCTGGAAGTCCGATGGCAAACTCTTTATCCTCTTCTCCAGTTGGATCTGGCAGTCCTATTAGGCACAATGATCTGAATA TGCATTTTGCTTCTGGAATGAGGAATGTAGCTGGGGTTATGGGTCCATGGCATCTAGATAGTGGAAACATGGATGAAAGC TTTGCATCGTCTCTGTTGGAAGAGTTTAAAAGCAACAAAACAAAATGTTTCGAGCTTTCTGAAATTTCTGGCCATGTTGT TGAATTCAGTGCTGATCAATATGGGAGCCGGTTTATCCAACAAAAGCTGGAAACAGCAACTACTGAAGAAAAGACCATGG TTTATCAGGAAATTATGCCTCATGCTCTTGCATTGATGACTGATGTCTTTGGTAATTATGTGGTTCAGAAGTTTTTTGAG CATGGACTTGCATCCCAGAGAAGAGAGTTAGCCAACAAGCTTTTTAGCCATGTTCTGGCACTTAGCCTTCAAATGTATGG TTGTCGGGTCATCCAGAAGGCCATAGAAGTTGTTGATCTAGACCAGAAGATAAATATGGTTCAGGAGCTTGATGGTAATA TCATGCGCTGTGTACGAGATCAGAATGGTAACCATGTTATTCAGAAGTGTATTGAATGTGTACCTGAAGATGCAATCGAC TTTATTGTCTCAACCTTTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGATGTCGGGTGATACAGAGAGTCCT GGAGCACTGCAAAGATCCTAACACACAGCAAAAAGTTATGGATGAGATTTTAGGGGCAGTTAGCATGTTAGCCCAGGATC AGTACGGAAACTATGTTGTCCAGCATGTACTTGAGCATGGGAAACCTCATGAGCGTTCAGCTATTATCAAGGAATTAGCT GGCAATATTGTTCAAATGAGCCAACAGAAGTTTGCCTCAAATGTTGTGGAGAAGTGTTTGGCCTTTGGAGGTCCTGCTGA ACGCCAATTCCTTGTGAATGAGATGCTCGGATCCACGGATGAAAATGAGCCTCTTCAGGCCATGATGAAAGATCAATTTG CTAATTATGTTGTGCAAAAGGTGCTGGAGACTTGTGATGACCATCAGCGTGAGCTAATTCTTTCACGAATTAAAGTCCAT TTGAATGCATTGAAAAAATACACCTACGGAAAGCATATTGTCGCACGTGTAGAGAAACTTGTTGCTGCTGGAGGTACTTA A
Protein sequence (LotjaGi3g1v0285800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGHKTTIAGFHSRPASRNAFDENVDIMTSAEADLADLCRDSSATDALRSGTNLQGSSATQNNGTQSSYTYAAALGSPLSR STTPDPQHVARAPSPCLTPIGGGRVAAAEKRGMANPDAYNVSTGLNGSADIVDALSGMNLSADDVLDGDNHFPSQVESDV DNHRRYLFGLQGGQDHGKQHAYLKKSESGHMQKTAYSGSGRSGGNGPDINNSLDRQIELQKSAVSPNNSYFKGSPTSPFN GGGGMPAQYQPLDGTNSSFTNYGLSGYAGNPALASLMASQLGTGNMPPLFENVAAASTMASPGMDSRIFGGLASGIASPS DVHTHGRMGNQISGGALQAPFVDPMYLQYMRASEYGSPQLAALNDPSVDRNYLGNSYMNLLELQKAYLGNLLSPHKSQYN VPLGGKSGGSNHHGYYGNPAYGVGLSYPGSPMANSLSSSPVGSGSPIRHNDLNMHFASGMRNVAGVMGPWHLDSGNMDES FASSLLEEFKSNKTKCFELSEISGHVVEFSADQYGSRFIQQKLETATTEEKTMVYQEIMPHALALMTDVFGNYVVQKFFE HGLASQRRELANKLFSHVLALSLQMYGCRVIQKAIEVVDLDQKINMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAID FIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPNTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSAIIKELA GNIVQMSQQKFASNVVEKCLAFGGPAERQFLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDHQRELILSRIKVH LNALKKYTYGKHIVARVEKLVAAGGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 825 | 825 | 0.0 | – | |
| PANTHER | 1 | 825 | 825 | 0.0 | – | |
| Pfam | 91 | 500 | 410 | 4.8E-152 | ||
| MobiDBLite | 184 | 252 | 69 | - | – | |
| MobiDBLite | 190 | 236 | 47 | - | – | |
| ProSiteProfiles | 481 | 821 | 341 | 132.628 | ||
| Gene3D | 481 | 823 | 343 | 1.5E-141 | ||
| SUPERFAMILY | 484 | 818 | 335 | 4.17E-119 | ||
| CDD | 497 | 817 | 321 | 4.7885E-177 | ||
| Pfam | 501 | 531 | 31 | 1.3E-6 | ||
| SMART | 501 | 536 | 36 | 2.4E-5 | ||
| ProSiteProfiles | 501 | 536 | 36 | 11.3 | ||
| SMART | 537 | 572 | 36 | 2.1E-6 | ||
| ProSiteProfiles | 537 | 572 | 36 | 10.46 | ||
| Pfam | 540 | 568 | 29 | 2.8E-6 | ||
| SMART | 573 | 608 | 36 | 2.2E-6 | ||
| ProSiteProfiles | 573 | 608 | 36 | 10.367 | ||
| Pfam | 574 | 604 | 31 | 2.6E-4 | ||
| ProSiteProfiles | 609 | 644 | 36 | 9.924 | ||
| SMART | 609 | 644 | 36 | 4.5E-7 | ||
| Pfam | 614 | 642 | 29 | 6.2E-6 | ||
| SMART | 645 | 681 | 37 | 3.2E-7 | ||
| ProSiteProfiles | 645 | 681 | 37 | 10.88 | ||
| Pfam | 646 | 677 | 32 | 4.7E-9 | ||
| ProSiteProfiles | 682 | 717 | 36 | 12.117 | ||
| SMART | 682 | 717 | 36 | 1.8E-6 | ||
| Pfam | 685 | 713 | 29 | 1.8E-6 | ||
| ProSiteProfiles | 718 | 753 | 36 | 9.667 | ||
| SMART | 718 | 753 | 36 | 3.6E-7 | ||
| Pfam | 719 | 751 | 33 | 3.3E-5 | ||
| ProSiteProfiles | 754 | 795 | 42 | 10.017 | ||
| SMART | 760 | 795 | 36 | 8.7E-7 | ||
| Pfam | 768 | 794 | 27 | 1.9E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi3g1v0285800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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