Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0285800.5

Overview

Field Value
Gene ID LotjaGi3g1v0285800
Transcript ID LotjaGi3g1v0285800.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Pumilio-like protein; TAIR: AT2G29190.1 pumilio 2; Swiss-Prot: sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2; TrEMBL-Plants: tr|I1MDC9|I1MDC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:57773216..57778827) extracted from Lotus japonicus Gifu genome v1.2.

ATGCTGTCTGAACTGGGTAGGAGGCCGGTGCTGGGTGGGAACGAGGGTTCTTTTGGTGATGAATTGGATAAGGAGATAGG GATGTTGCTTCGTGAGCAGCGGCGGCAGGATGTTGATGATCACGAGCGCGAGCTCAATCGGTATAGGAGTGGATCAGCGC CTCCAACTGTGGAGGGTTCTCTGAATGCAGTTGGAGGGTTGTTTGGAGGCGGAGGCGGCGGCGGCGGTCTCGGTGGCCCA TTTTCTGAATTTCCTGGGGCTAACCATGAGAATGATTTTGCGTCTGAGGAAGAGCTTAGGTCTGATCCGGCTTATCTTCA ATACTATTACTCCAATGTGAATTTGAATCCTCGACTTCCGCCTCCTTTGCTATCAAAGGAGGATTGGAGGTCTGCACAGA GAGCTTCAGTTCTTGGTGGAATTGGAGATAGGAGAAAAGTGAACAGGGTTGATGACAGTGGTGCTAGATCATTGTTTGCA ACCCCTCCGGGGTTTAACTCGAGGAAGTCAGAGAGTGAGGCGGAGAATGAGAAAATGAGAGGTTCTGCTTCTGCAGAGTG GGGTGGTGATGGGCTCATTGGCTTGCCAGGCCTAGGTCTTGGGAGTAAACAAAAGAGCCTTGCAGAAATTTTCCAGGTAG CTTGCTTCTTTCATTGTGTTCTATTCTTGGCACCCTCACTCTTTAGCATCTATTCCCTGGGTTGTAACATATCTTATTTT TGTGTTCACTTTTATCTTTGACACATCATAAGAGACTGGCTTTCTTAGGTTCATTGATAAATTTATATATTTTTTTAATG TTTGAACTTTTTAAATCTTGTGGGAAATAAAGTTTGATTCATTCAATGGTAGACGTTAAGATGCCACAGATGCCTCTGTG GCATTATTATTTCTCTTTTAGCTTGTACAATGTTATTTCTATTGCTCATGGTGTTGGAAAGTAGCAGTATAAAGCTCATG TGAAGCTTCATTGTTTTTTCATCAACTTCTACTGATGATTGGTCCTTTTTGTTTGTCCAGTAGTGCTTGGCTTTTTTTAG TTTCATGCTGGCTGAAATGTTTATACTTATAATTCTGTACCTTGCTCGATTGCATCCATTGTAAAATCTTATAGGCACTC AATGATAACCTGTAAGACAACGAATAATTCAGGAATTGACTGACTTGGCTCTGTTTGTGGTTTACATTCAGCACTTATGA AAAATTATATCTTTTGACACATTTGTAAACATCAAGCTTCTGAGCATATGTTTATCATTGTCCTGCTGCAGCTTCTTTTT TGTCCTTTGCTGGATTCATATTTCATTCATTTCATCACGTCATTAATCTTTATTTTATCTCTTGAACTTTGAAAGTTTGT GCCACAGTTCATTAACTTTTTTTTTGTAAAATTGTACCAATGTTCATTTAACTTGCTAGCATCGACTGTAGACATTTTGT ACTACACTCTCATTTGTAATCAATAATCATGTAGCGATTTCCCTTTCTTCAAATACTTTTTACTTTTGTTTCCCTAACCA TTGCCTGCAAGGGCACACGTGACTGACATGTGCATGATGTCAGCATTCTTCTCCACACACATGATTTTTTTTCTTTTGTT TCTGTACATTTTTTTGTGCCCAAAATTTATAATCACCAATTGCGCAGGATGACATGGGACATAAGACCACTATTGCTGGA TTTCATTCTCGTCCAGCCAGCCGCAATGCATTTGATGAAAATGTTGATATTATGACTTCTGCTGAAGCAGACCTCGCCGA TTTATGCCGTGATTCCTCAGCCACTGATGCCTTAAGATCTGGAACAAATCTTCAGGGGTCGTCTGCAACCCAAAATAATG GCACGCAAAGTTCATATACTTATGCTGCTGCACTTGGCTCTCCCTTGTCACGTAGTACTACTCCTGATCCACAGCATGTT GCTAGAGCTCCCAGTCCTTGCCTCACACCTATTGGTGGCGGGAGAGTTGCTGCTGCTGAGAAGAGAGGCATGGCCAATCC TGATGCATATAATGTTTCAACTGGCCTCAATGGGTCAGCAGATATTGTGGATGCACTATCTGGCATGAACTTGTCAGCTG ATGATGTGTTGGATGGGGATAACCATTTCCCATCACAGGTTGAGTCCGATGTTGATAATCATAGGAGATATCTTTTTGGT TTGCAAGGTGGTCAGGATCATGGCAAGCAGCATGCATATTTAAAGAAGTCTGAGTCAGGACACATGCAAAAAACAGCTTA CTCTGGTTCAGGTAGGAGCGGTGGGAACGGGCCAGACATCAACAATTCCTTGGATAGGCAGATTGAGCTGCAAAAATCTG CTGTTTCTCCCAATAACTCATATTTCAAGGGATCACCTACATCTCCTTTTAATGGTGGAGGTGGTATGCCTGCTCAGTAC CAGCCTTTAGATGGTACCAATTCATCATTCACTAACTATGGCCTGAGTGGGTATGCTGGAAATCCAGCATTGGCATCCTT GATGGCTAGCCAACTTGGAACTGGTAATATGCCACCCCTATTTGAAAATGTTGCTGCAGCATCAACAATGGCTTCCCCTG GAATGGACTCTAGAATCTTTGGTGGTTTGGCTTCTGGCATTGCTTCTCCATCTGATGTGCATACTCACGGAAGAATGGGA AATCAAATTTCAGGTGGTGCTCTCCAGGCTCCTTTTGTCGATCCCATGTATCTTCAGTACATGAGAGCATCTGAATATGG TTCCCCACAACTGGCTGCACTTAACGATCCATCTGTGGATAGAAATTACTTGGGCAACTCGTACATGAATTTACTTGAGC TTCAGAAAGCTTATCTTGGGAATCTGCTTTCACCTCATAAGTCTCAATACAATGTTCCACTGGGTGGTAAATCAGGTGGC TCCAATCATCATGGTTATTATGGAAATCCTGCATATGGGGTTGGTTTGTCTTACCCTGGAAGTCCGATGGCAAACTCTTT ATCCTCTTCTCCAGTTGGATCTGGCAGTCCTATTAGGCACAATGATCTGAATATGCATTTTGCTTCTGGAATGAGGAATG TAGCTGGGGTTATGGGTCCATGGCATCTAGATAGTGGAAACATGGATGAAAGCTTTGCATCGTCTCTGTTGGAAGAGTTT AAAAGCAACAAAACAAAATGTTTCGAGCTTTCTGAAATTTCTGGCCATGTTGTTGAATTCAGGTTATTTTTTTCTGCCTG TTGGTTGTTTTGGTGTTAATTTTATATTGCTATACTTTCTTTTGAAAAAATAAATTTAATGAATAGTCTCTCATCTGCAG TGCTGATCAATATGGGAGCCGGTTTATCCAACAAAAGCTGGAAACAGCAACTACTGAAGAAAAGACCATGGTTTATCAGG AAATTATGCCTCATGCTCTTGCATTGATGACTGATGTCTTTGGTAATTATGTGGTTCAGAAGGTAGATATTAATTAACAT TCTCACTCTGTACTGCTTGTGCACACTTGAGTCGCTCTCTTTTAATGGATCTTGTTAGACTGACAATTTCCATCGGGCAG TTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAGTTAGCCAACAAGCTTTTTAGCCATGTTCTGGCACTTAGCCTTCA AATGTATGGTTGTCGGGTCATCCAGAAGGTATTGACAACTTTGTGTATAGTGATTTCTATGAATGACTGTGCATGGTCTT CTGAATATGTCATCTGTTTATGTTTTTTTAACAAATATTTTATATATCTCTTTAGGCCATAGAAGTTGTTGATCTAGACC AGAAGATAAATATGGTTCAGGAGCTTGATGGTAATATCATGCGCTGTGTACGAGATCAGAATGGTAACCATGTTATTCAG AAGTGTATTGAATGTGTACCTGAAGATGCAATCGACTTTATTGTCTCAACCTTTTTTGATCAAGTTGTGACACTATCAAC CCATCCATATGGATGTCGGGTGATACAGGTAAAATTCTTCGGTACTTGTGTTATTCTTTGTATGTACTTGAAGTCCTTGA ACATACAATGATGCCTTTTATATGGCAGAGAGTCCTGGAGCACTGCAAAGATCCTAACACACAGCAAAAAGTTATGGATG AGATTTTAGGGGCAGTTAGCATGTTAGCCCAGGATCAGTACGGAAACTATGTTGTCCAGGTTTATAATTTATTTTTTACA ACTACAGTTTGGGCTTTTCTATTGCCGCAACTATTGACTTGAAAGTTGAAGCCCTACAGTTTCATGCTGTGTGTGGTAGT TGATGTTGTTGCTTGTGGATTCCCTGCAGCAATCTAGCTTTGTTGAGATGATAATACAGATCATCATAGTTTTTCTGCAC TTTCGGTTGATTATAATCCTTGCAGTTCATCCCTCATGTTTTTCTTAAATTATTCCCCTGCACATTTTTTTTCTACATTT TTCATTTACCTTTTATCTGAACATAGGCATGTCTCCTTCTTTGTTATGAATATGATATACATTGACACAGCATTTTCCTT GTCAATGGTCTGACGAAATTCAGTATTACACTTTTTTATGTTTTTTATTGTGCATGTCTTGGAAGACATGTACTCTTCAG TCATAATTGTTTGATCACTTGATGTTATACTATGCAGTCCTTTCTACTTTATGTGTATTGTGTATACCTCCTTCCAAACT TTGTTGCTTGTGATATGAACTTCTAGTTCCTTCTCCAGCAAATACTTGGTACCTCATACAAATGAAGCTTTTGTATTACT TGACTTTATATTCGTATAGCATGTCATATATACAAGTCAGTTAGTCAGCTGATCACTTGTTCTGTTTCATCCCCTCTTGG ATAACAGCATGTACTTGAGCATGGGAAACCTCATGAGCGTTCAGCTATTATCAAGGAATTAGCTGGCAATATTGTTCAAA TGAGCCAACAGAAGTTTGCCTCAAATGTTGTGGAGAAGTGTTTGGCCTTTGGAGGTCCTGCTGAACGCCAATTCCTTGTG AATGAGATGCTCGGATCCACGGATGAAAATGAGCCTCTTCAGGTTCTTTAAATTACCTTTATAAACTACATAATCCCCCC TACTGTCTACTGATTATTCTGAGAACTTTAGAATTATCTCTCCAAAGATTTAAATGTGAGTAGTTCTTACTATAATTAAA AACATGTTGACCTAGTCTTTTTAAAAATAATATTATCCATGCATCCACACTGTAGAATGTTTGAATAGATTGATGTGTTT TCACATATTTCGTGAATCTGCATTGAACCTTGATCACTGAAGTTTATGATCTATAAAAAGATGGTAATTTTATTTATAGA GTCCTTTTAATACAATTGATACACTTCGTAAGGATGCTCTAGATCCCCATCATATCTTTATGAAACTGGTAGTAGTTTGT CATTCTTGCAAATGCTAAATCAGGTTCTTCTTATATACAGGCCATGATGAAAGATCAATTTGCTAATTATGTTGTGCAAA AGGTGCTGGAGACTTGTGATGACCATCAGCGTGAGCTAATTCTTTCACGAATTAAAGTCCATTTGAATGCATTGAAAAAA TACACCTACGGAAAGCATATTGTCGCACGTGTAGAGAAACTTGTTGCTGCTGGAGGTACTTAATTCCTCATATGCGCTAT CACTTATTTTGA 

CDS sequence (LotjaGi3g1v0285800.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGTCTGAACTGGGTAGGAGGCCGGTGCTGGGTGGGAACGAGGGTTCTTTTGGTGATGAATTGGATAAGGAGATAGG GATGTTGCTTCGTGAGCAGCGGCGGCAGGATGTTGATGATCACGAGCGCGAGCTCAATCGGTATAGGAGTGGATCAGCGC CTCCAACTGTGGAGGGTTCTCTGAATGCAGTTGGAGGGTTGTTTGGAGGCGGAGGCGGCGGCGGCGGTCTCGGTGGCCCA TTTTCTGAATTTCCTGGGGCTAACCATGAGAATGATTTTGCGTCTGAGGAAGAGCTTAGGTCTGATCCGGCTTATCTTCA ATACTATTACTCCAATGTGAATTTGAATCCTCGACTTCCGCCTCCTTTGCTATCAAAGGAGGATTGGAGGTCTGCACAGA GAGCTTCAGTTCTTGGTGGAATTGGAGATAGGAGAAAAGTGAACAGGGTTGATGACAGTGGTGCTAGATCATTGTTTGCA ACCCCTCCGGGGTTTAACTCGAGGAAGTCAGAGAGTGAGGCGGAGAATGAGAAAATGAGAGGTTCTGCTTCTGCAGAGTG GGGTGGTGATGGGCTCATTGGCTTGCCAGGCCTAGGTCTTGGGAGTAAACAAAAGAGCCTTGCAGAAATTTTCCAGGATG ACATGGGACATAAGACCACTATTGCTGGATTTCATTCTCGTCCAGCCAGCCGCAATGCATTTGATGAAAATGTTGATATT ATGACTTCTGCTGAAGCAGACCTCGCCGATTTATGCCGTGATTCCTCAGCCACTGATGCCTTAAGATCTGGAACAAATCT TCAGGGGTCGTCTGCAACCCAAAATAATGGCACGCAAAGTTCATATACTTATGCTGCTGCACTTGGCTCTCCCTTGTCAC GTAGTACTACTCCTGATCCACAGCATGTTGCTAGAGCTCCCAGTCCTTGCCTCACACCTATTGGTGGCGGGAGAGTTGCT GCTGCTGAGAAGAGAGGCATGGCCAATCCTGATGCATATAATGTTTCAACTGGCCTCAATGGGTCAGCAGATATTGTGGA TGCACTATCTGGCATGAACTTGTCAGCTGATGATGTGTTGGATGGGGATAACCATTTCCCATCACAGGTTGAGTCCGATG TTGATAATCATAGGAGATATCTTTTTGGTTTGCAAGGTGGTCAGGATCATGGCAAGCAGCATGCATATTTAAAGAAGTCT GAGTCAGGACACATGCAAAAAACAGCTTACTCTGGTTCAGGTAGGAGCGGTGGGAACGGGCCAGACATCAACAATTCCTT GGATAGGCAGATTGAGCTGCAAAAATCTGCTGTTTCTCCCAATAACTCATATTTCAAGGGATCACCTACATCTCCTTTTA ATGGTGGAGGTGGTATGCCTGCTCAGTACCAGCCTTTAGATGGTACCAATTCATCATTCACTAACTATGGCCTGAGTGGG TATGCTGGAAATCCAGCATTGGCATCCTTGATGGCTAGCCAACTTGGAACTGGTAATATGCCACCCCTATTTGAAAATGT TGCTGCAGCATCAACAATGGCTTCCCCTGGAATGGACTCTAGAATCTTTGGTGGTTTGGCTTCTGGCATTGCTTCTCCAT CTGATGTGCATACTCACGGAAGAATGGGAAATCAAATTTCAGGTGGTGCTCTCCAGGCTCCTTTTGTCGATCCCATGTAT CTTCAGTACATGAGAGCATCTGAATATGGTTCCCCACAACTGGCTGCACTTAACGATCCATCTGTGGATAGAAATTACTT GGGCAACTCGTACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGGAATCTGCTTTCACCTCATAAGTCTCAATACA ATGTTCCACTGGGTGGTAAATCAGGTGGCTCCAATCATCATGGTTATTATGGAAATCCTGCATATGGGGTTGGTTTGTCT TACCCTGGAAGTCCGATGGCAAACTCTTTATCCTCTTCTCCAGTTGGATCTGGCAGTCCTATTAGGCACAATGATCTGAA TATGCATTTTGCTTCTGGAATGAGGAATGTAGCTGGGGTTATGGGTCCATGGCATCTAGATAGTGGAAACATGGATGAAA GCTTTGCATCGTCTCTGTTGGAAGAGTTTAAAAGCAACAAAACAAAATGTTTCGAGCTTTCTGAAATTTCTGGCCATGTT GTTGAATTCAGTGCTGATCAATATGGGAGCCGGTTTATCCAACAAAAGCTGGAAACAGCAACTACTGAAGAAAAGACCAT GGTTTATCAGGAAATTATGCCTCATGCTCTTGCATTGATGACTGATGTCTTTGGTAATTATGTGGTTCAGAAGTTTTTTG AGCATGGACTTGCATCCCAGAGAAGAGAGTTAGCCAACAAGCTTTTTAGCCATGTTCTGGCACTTAGCCTTCAAATGTAT GGTTGTCGGGTCATCCAGAAGGCCATAGAAGTTGTTGATCTAGACCAGAAGATAAATATGGTTCAGGAGCTTGATGGTAA TATCATGCGCTGTGTACGAGATCAGAATGGTAACCATGTTATTCAGAAGTGTATTGAATGTGTACCTGAAGATGCAATCG ACTTTATTGTCTCAACCTTTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGATGTCGGGTGATACAGAGAGTC CTGGAGCACTGCAAAGATCCTAACACACAGCAAAAAGTTATGGATGAGATTTTAGGGGCAGTTAGCATGTTAGCCCAGGA TCAGTACGGAAACTATGTTGTCCAGCATGTACTTGAGCATGGGAAACCTCATGAGCGTTCAGCTATTATCAAGGAATTAG CTGGCAATATTGTTCAAATGAGCCAACAGAAGTTTGCCTCAAATGTTGTGGAGAAGTGTTTGGCCTTTGGAGGTCCTGCT GAACGCCAATTCCTTGTGAATGAGATGCTCGGATCCACGGATGAAAATGAGCCTCTTCAGGCCATGATGAAAGATCAATT TGCTAATTATGTTGTGCAAAAGGTGCTGGAGACTTGTGATGACCATCAGCGTGAGCTAATTCTTTCACGAATTAAAGTCC ATTTGAATGCATTGAAAAAATACACCTACGGAAAGCATATTGTCGCACGTGTAGAGAAACTTGTTGCTGCTGGAGGTACT TAA 

Protein sequence (LotjaGi3g1v0285800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLSELGRRPVLGGNEGSFGDELDKEIGMLLREQRRQDVDDHERELNRYRSGSAPPTVEGSLNAVGGLFGGGGGGGGLGGP FSEFPGANHENDFASEEELRSDPAYLQYYYSNVNLNPRLPPPLLSKEDWRSAQRASVLGGIGDRRKVNRVDDSGARSLFA TPPGFNSRKSESEAENEKMRGSASAEWGGDGLIGLPGLGLGSKQKSLAEIFQDDMGHKTTIAGFHSRPASRNAFDENVDI MTSAEADLADLCRDSSATDALRSGTNLQGSSATQNNGTQSSYTYAAALGSPLSRSTTPDPQHVARAPSPCLTPIGGGRVA AAEKRGMANPDAYNVSTGLNGSADIVDALSGMNLSADDVLDGDNHFPSQVESDVDNHRRYLFGLQGGQDHGKQHAYLKKS ESGHMQKTAYSGSGRSGGNGPDINNSLDRQIELQKSAVSPNNSYFKGSPTSPFNGGGGMPAQYQPLDGTNSSFTNYGLSG YAGNPALASLMASQLGTGNMPPLFENVAAASTMASPGMDSRIFGGLASGIASPSDVHTHGRMGNQISGGALQAPFVDPMY LQYMRASEYGSPQLAALNDPSVDRNYLGNSYMNLLELQKAYLGNLLSPHKSQYNVPLGGKSGGSNHHGYYGNPAYGVGLS YPGSPMANSLSSSPVGSGSPIRHNDLNMHFASGMRNVAGVMGPWHLDSGNMDESFASSLLEEFKSNKTKCFELSEISGHV VEFSADQYGSRFIQQKLETATTEEKTMVYQEIMPHALALMTDVFGNYVVQKFFEHGLASQRRELANKLFSHVLALSLQMY GCRVIQKAIEVVDLDQKINMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFIVSTFFDQVVTLSTHPYGCRVIQRV LEHCKDPNTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSAIIKELAGNIVQMSQQKFASNVVEKCLAFGGPA ERQFLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGGT 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 20 20 -
PANTHER 31 1039 1009 0.0
PANTHER 31 1039 1009 0.0
MobiDBLite 36 64 29 -
MobiDBLite 152 187 36 -
MobiDBLite 290 309 20 -
Pfam 305 714 410 8.2E-152
MobiDBLite 398 466 69 -
MobiDBLite 404 450 47 -
ProSiteProfiles 695 1035 341 132.628
Gene3D 695 1037 343 2.5E-141
SUPERFAMILY 698 1032 335 9.02E-119
CDD 711 1031 321 2.10626E-176
ProSiteProfiles 715 750 36 11.3
SMART 715 750 36 2.4E-5
Pfam 715 745 31 1.6E-6
SMART 751 786 36 2.1E-6
ProSiteProfiles 751 786 36 10.46
Pfam 754 782 29 3.7E-6
ProSiteProfiles 787 822 36 10.367
SMART 787 822 36 2.2E-6
Pfam 788 818 31 3.4E-4
SMART 823 858 36 4.5E-7
ProSiteProfiles 823 858 36 9.924
Pfam 828 856 29 8.1E-6
ProSiteProfiles 859 895 37 10.88
SMART 859 895 37 3.2E-7
Pfam 860 891 32 6.1E-9
ProSiteProfiles 896 931 36 12.117
SMART 896 931 36 1.8E-6
Pfam 899 927 29 2.3E-6
ProSiteProfiles 932 967 36 9.667
SMART 932 967 36 3.6E-7
Pfam 933 965 33 4.3E-5
ProSiteProfiles 968 1009 42 10.017
SMART 974 1009 36 8.7E-7
Pfam 982 1008 27 2.4E-6

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0285800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…