Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0286400 |
| Transcript ID | LotjaGi3g1v0286400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIA large subunit; TAIR: AT1G07470.1 Transcription factor IIA, alpha/beta subunit; Swiss-Prot: sp|Q9USU9|TOA1_SCHPO Transcription initiation factor IIA large subunit; TrEMBL-Plants: tr|A0A0B2RCP3|A0A0B2RCP3_GLYSO Transcription initiation factor IIA large subunit; Found in the gene: LotjaGi3g1v0286400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:57885842..57891713) extracted from Lotus japonicus Gifu genome v1.2.
TCTTTATTCTCTCTTTCTGTTCCGCCTCTTGTTTCTTTCTTTCTCTCTCTACACGCCGTTTTCGTTTTACTCAGCTGTCT CCTTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCCTTCCTCACCTTCACAAACCCTAGACCATACTCCATGATT CTTCTTCATCTCTTCCGCTGAACTCTCTCTTCAATTTCCCTTCCCAAATCTCTCCAATCGAATCGGAGAATTCACAATTC CAACCACTCCCTCTGGTGAATTTTCCATTCTTCGTCATGGCAGCAGCAGCAGCTTCCTCCACCAGCCAGGTCTACATCGA TGTAATCGAGGATGTCATGGTCAAGGTCCGCGACGAGTTCGTCAACAACGGTGGTCCTGGCGAGGAAGTTCTCAAGGAGC TTCAAGCTGTAATAATAATAATTCAGATTATTATTTTTTCATGTTTATATGAATATGCGTTGATTTAGTTTCGATGAAAT TTTCAATCTCAGTTTGTTGGTTTGTTTGGTTGATTTTTTTGGGTTTGGATCAGAGAGATCAATTGTTTTTGTTGACAATT TGTGTAGATGTGGGAATCAAAGATGATCCAAGCTGGTGTAGTGCTTGGTCCTATAGAAAGGTCCATTGCAGCTAAGCCAA TGCCGGGTGGTCCGATTACACCGGTGCACGATCTTAATGTGCCGTATGAGGGGACTGAGGAGTATGAAACTCCTACAGCT GATTTACTTTTCCCCCCTGTGAGTTTTAACCCAAACCCACATTCCACACTTTAAGTTTTACTAGTAAGGTCTCCACTTTA ATGTGTTCTTAGGAGTTTACATTATTGGATTGTTGATATGGGTGGCTTTTGATTGTACAGACGCCATTGCAAACTCCAAT TCAAACCCCTTTACCGGGAACTGTGGATAACTCATATAACATTCCTACTGGACCTAGTGATTACTCTTCTTCTGGCAATG ATGCAGGAGGGAATATTGATGCAAAAGGTGGAAGACCTGGTCCATATATGGTAAGACTCATTTTGCTGGCTAACCAAATG ATATTTTGAAATGTTTTCCCATGTTCAATTGCCTTTTTTCTATGGTTTTAGTTTCTCAAATCCGATTTTCAATTTGTGCA TTTGATTTAATCTGTGGCTCGTTTACAGTGGCTGACCTGAACTCTTTTATTTAAAATAAATCATGTTATGTTCATGAAAC TTATTTCATTCTGTGCATTGATATGTCCTTATAATCTTCTACAGCAGCCCCCTTCTCCATGGATGAACCCGAGGCCTTCA CTTGATGTCAATGTTGGTGAGTCACATTTAAATTCGGAACAAAGTTTTTAATAAAATGGATTTACAGTTTACACTAATGA TGGTGTGTATTACTGTAGCTTACGTGGAAGGGCGGGATGAGCCGGACAGAGGAACTTCAAATCAACCATTGACACAGGTA AGCAAGTTAATGAAGTCTTATAGAAGAATATTCGTGCGCTGTTGTTAAAATTTGAAGAGACTTCCTCGCAATTTCCACGG GAAAATGAAAACGCAATGATTTGTGAAGTTAATGAAGTCTTATAGAAGAATACTCGTGCTCTATTGTTTAAAAAGAATAC CATTGCTCATGTTAGATATTTTTTGTGAAGCCAGCAAATACTGTTAATTTCTTGTTGGAACACTTATTATGAGCATTTAT TTTTATGTAGAATGCCAGGTCTGAACAGTTAGAGGTAGATAGAGGGGGTTAAAAAAACTAGAAGCTGAATTAAATCATTA GAAAATATTTAAATTAAATGGATTGTCATGTTTCATGATTCGCAATAAGACAATATATGGGCATCATTGGATTTATTTGG CCAACCCTGCATAGGGAAAGGGCTTTTGTTTTGTTATTTTCAATTCTGAACTTAAAAGCCATCACATTTAGAAATTAATC AATAGTTGAAATAATTTCAGGACTTCCTCGCAATTTCCACTGGAAAACGAAAACGCAATGATTTGCCTTCACAATATAAT GCTGGTGGATATATACCTCAGCAAGATGGAGCTGGAGATGTGTCATCTAGAGATTTTGAAATTGAGGTAAGGTTTTTTTT TACCTATTGGCCAGTATCTTCTTTTTAAAAAATTATCTTCTAAGTGTTTACATATCATTTGTAGTTGTTGTATTAGTCAA ATTTATTGCTTTTATCATCATTTTTTGTTTGTTAATGAGTTGGTGATTTGACTAAATTGGAGAAATGATATGATAATGTT CTCATAACTTTGAACTTTTTGTTGGATTTGGCACTTTCCTTATCTCTTTATTTGGGGTGGGGTTGAGACTAGATGGGGCA ATTCTTTCCATCTCAAGAAAGAGTATTGTGCTGCTTGGAGGCACTTTCTTTGAGTCCTTTTATTCGGATGAGGGTTGTTG TGGGGTTAGAACTAGATGTTTACATGAGGGATGGCTGATAGTGGAGGTATGCCCTGCCATCTCTGGTTCTCTACCTACAT TAGTTATTACAGGAATCTCTGAATTTTTTTGAACATTATGCTGTATAGTGATAGTTTACCTTGAAAACAAACAATTAACG ATTTCTTCAACCACATCAAAACTATAAGGTGTGCTTCCCAAAGTTGTACACTAAAATGAAAGAAAATGCGCCAGTCTCAA TTTCTGGGTCAACTAGATGAATGTTTTACTACTAGGTTAAATCTTTGGCAACATGTTTTTCTTCGCTTTTCATTTACCTT CTTTCTATACAAAAGTTTGTTTTCCCTTTTTTCCCTACTTAATTCATATTCCAAGCATGTTTTTTCAATGTTATTTCAGT CTTTCTCTTTTCTGTGTGCTTCCTGCTTGTATCTCTTTCTTCTGCATAGGATTTGTACTATTGTTGCAGTGGCATGAGAT GATGCAATGAACTTTCCTTTTTCTTTGCTAGGGCTTAGACAGTATAACTGATTTGTCATAATCCAAAATATTGAGCTTTA GCTTGTTTCTTTTCAGATATTCTTGCAGCCTGGATAACTCTAGCTTTTATATAGAAATTCACCTAAGTGCTAGTTTTCAC AAACAGCATAATGACGCAATGCAAATCCGTTTCTATTGTTTTCTCTTTTCCCTTTTAGTTTATAGTTTCTGGGGCATTTG ATTGTGACACCAAGTGTTCCGTCATTCATTAACATAGCTTCTGGTTTCCAGGTTGTATTGATATCTTAGTTTAAGTGAAC TTATGCCATCTGGGAGCCACTTGACAATCTGTAAAGTGTTAAGTGTGAACCATATTCTAGTGTTTACCAACTTTAGAAGT CTGATAAAAATTGTCCACTGAATTCTGTTTCTCCAATCCAAAGGAATGTGTTTTCGGATTTTCTTTACTGCTTTACCTTG TTCAACTTTAACTCATTTTGAAACCCAACTTTGCTTGTGTTTACTTTTTTTTAAGTAATTTAACCTTTTGTTTTGTTCTC GTAAATGATAAACAGTTAAGAGGTATGCTAATGTTGTAGACTCTGAAGTGCAGTTAGTCTGTGTGTTCTTTCTTCTCTTC TTCATATGTCTGGCTACTTTAAGGCTAAAGCTAGTTGGGACTTTTGTCATTATGTTGTCAATAGTTCCTCTGTTATTGCT GCACCTGCAACAGCTTGTTTGTTAAGGCTTGCCCTATTTAAGGTTGAAATAAAATAAGGCTTTTTGGGGGAAAAATATAG TTGAGGTCGATATCAACAGCTTGTGATCAGTATTGGCTTTTACAGCCTACAACTCCACATGCATATGCTTTTATTTCTGT CTTCTCGTTTATTCATTGACTTGCTTGGTCGATGGAAAAATTTATTCAGTCGCTGAACTGTTGGACATCAATCATTCAGG TACATGGAGGGGGCATCTCCATCAATTCAAATCATACTAGTTTTAAAGGGAAAATGCTAGCAGATTTGGAGAGACAGGCT TCTAGGATTCCTCAACTTGATGGACCAATTCCTTACGATGATGATATGCTTTCTACTCCTAATGTGAGTAGTGATTCTTA TAACCTCTTTCTGGTGCTCATGAGCTTAGTAATGAAAGAGTTGCCATTTTTATGGATTGAATAGGCTAGTATTTATCTAA AAAGAGAAGATTGGATGATAAAAAGTCCTGTTAATTCAGTCTGCCTGTTAATCTTTTCAGAGTTTTAATTTCTTTATGCT TCTTTTATACTTGCTTGACCATGTTTACATTTTTTTTAAGCTTGACCATGTTTACATGAATCATCTTACTGGGTCTGTTT CATCTTGTTGCAGATTTACAATTACGGAGGAGTTTATACTGAAGACTACAATGTTGCAAATACACCAGCTCCACCTGGTA AATGGAGAACGAGGATAGATAAATTTTAATTTGAATATTTGTGTGGCTAAGTATATTTATCCCTCACACTTGTTGATGAT CCCCCTGTAGAAGTACCAGCAAGCACCCCTGCTCTCGTAGCTCAAAATGAGGTGCCAAATGACGACGACGATGATGATGA ACCATTAAATGAAAATGATGATGATGAGTTGGATGACCTGGACCAAGGAGAGGACCAAAATACACATCATCTAGTTTTGG CCCAGTTTGACAAGGTAACATACAGTGCCCTTCCACTTTTGGTGAATTACATGTCAACTGCTATAGTAATATGATATAGT TAATGATTCGGGATTGGATAATTATTTTGCGAGTAATAATCTTGCTACAAATTTTAGGTCACACGTACCAAGAGCAGGTG GAAATGCACACTAAAGGATGGCATCATGCACATAAATAATAAGGATGTTCTGTTCAATAAGGTTTGTTTGAGCCTATTTG TTTTATAGTTTAGTTAAGAGTAATTATGTTTGAGTGTTAAAATTAATTTTGTTTCACATAAAGGTTAGATAGTTTTTCCT AATGTATAAGAAATTTACATGTGACTTAACTTACGTTTAACATTCCGTTAAGAATTCATGCTAAGTGTGCGAGTCAAAAT ATACTTATATTTAGACCCGAAAAGTAATTATATCGTACTTTCCAAACAAAACCTCCACAAGTTCATGCTCTCAATCTTAA TTCTATTAAACTTGATTATGATAAACTAAGTTCACTAAACCTAATTCTACTAAACTTAAACGGACCGGCAGTCTTAAGGT GAATCAATGATGATATTGTCTCATTCTTTTAGTGCAAGTGTTTAACAAATTGACACGATGACTTCTGCAGGCGACAGGGG AGTTTGACTTCTAATTTTGCTGGGGCCAGTGCTTTCGTGAAGATTAATTCAGAGGTGCCATTGAGTGTTTCATGATCTTT CATTGATTATAATTATTAAATGAAAATTTGAGGAAAAGAGAAGTTATTTACAGTTTCGTGACTGTTTCAACTTTCAATGT TGGCCTCTTGTACATAAAGGATGAGCAATTTTTCGCCTTTACATTTGTTTAGATATTTGAGGCATTTTATGAAGTCCACC GTTTGTCAAGTATGTAGTTCCTCTAGTTCTGTGTACTTGGACATTTTGGTTAATTTGAGAATTTCATTCTACCATAATGA TGGTTAATTGGCTTGAACCGTGTCTCTGTTGCTTTGCATTTAAATCCTAAACGCAAACCCTAATAAACAGGCCGACAACG GTTTGGAACTGGTTTTCTGAATTCTGTGTTTTCCTAATTATGTGCCCTGTGTTCATTTACAATGTCGGCTTCCGGATTGA GAATGAAAACATTGACCTTATATGACTTGGGATAAGCAAGTTCGGCTGTGTGAAAATACATCTAACACCATCTTGGTTTA CTAAGAATAATTGTAATATTTTATAACCTATCATTATACTAGTAATTAGTGACACACTGAACCTAAGGAGGATGCTTTCT AAATTTAAACTTTAACTTTTTGCTTGAACTCT
CDS sequence (LotjaGi3g1v0286400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCAGCAGCAGCTTCCTCCACCAGCCAGGTCTACATCGATGTAATCGAGGATGTCATGGTCAAGGTCCGCGACGA GTTCGTCAACAACGGTGGTCCTGGCGAGGAAGTTCTCAAGGAGCTTCAAGCTATGTGGGAATCAAAGATGATCCAAGCTG GTGTAGTGCTTGGTCCTATAGAAAGGTCCATTGCAGCTAAGCCAATGCCGGGTGGTCCGATTACACCGGTGCACGATCTT AATGTGCCGTATGAGGGGACTGAGGAGTATGAAACTCCTACAGCTGATTTACTTTTCCCCCCTACGCCATTGCAAACTCC AATTCAAACCCCTTTACCGGGAACTGTGGATAACTCATATAACATTCCTACTGGACCTAGTGATTACTCTTCTTCTGGCA ATGATGCAGGAGGGAATATTGATGCAAAAGGTGGAAGACCTGGTCCATATATGCAGCCCCCTTCTCCATGGATGAACCCG AGGCCTTCACTTGATGTCAATGTTGCTTACGTGGAAGGGCGGGATGAGCCGGACAGAGGAACTTCAAATCAACCATTGAC ACAGGACTTCCTCGCAATTTCCACTGGAAAACGAAAACGCAATGATTTGCCTTCACAATATAATGCTGGTGGATATATAC CTCAGCAAGATGGAGCTGGAGATGTGTCATCTAGAGATTTTGAAATTGAGGTACATGGAGGGGGCATCTCCATCAATTCA AATCATACTAGTTTTAAAGGGAAAATGCTAGCAGATTTGGAGAGACAGGCTTCTAGGATTCCTCAACTTGATGGACCAAT TCCTTACGATGATGATATGCTTTCTACTCCTAATATTTACAATTACGGAGGAGTTTATACTGAAGACTACAATGTTGCAA ATACACCAGCTCCACCTGAAGTACCAGCAAGCACCCCTGCTCTCGTAGCTCAAAATGAGGTGCCAAATGACGACGACGAT GATGATGAACCATTAAATGAAAATGATGATGATGAGTTGGATGACCTGGACCAAGGAGAGGACCAAAATACACATCATCT AGTTTTGGCCCAGTTTGACAAGGTCACACGTACCAAGAGCAGGTGGAAATGCACACTAAAGGATGGCATCATGCACATAA ATAATAAGGATGTTCTGTTCAATAAGGCGACAGGGGAGTTTGACTTCTAA
Protein sequence (LotjaGi3g1v0286400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAAAASSTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMIQAGVVLGPIERSIAAKPMPGGPITPVHDL NVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTVDNSYNIPTGPSDYSSSGNDAGGNIDAKGGRPGPYMQPPSPWMNP RPSLDVNVAYVEGRDEPDRGTSNQPLTQDFLAISTGKRKRNDLPSQYNAGGYIPQQDGAGDVSSRDFEIEVHGGGISINS NHTSFKGKMLADLERQASRIPQLDGPIPYDDDMLSTPNIYNYGGVYTEDYNVANTPAPPEVPASTPALVAQNEVPNDDDD DDEPLNENDDDELDDLDQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDVLFNKATGEFDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 58 | 57 | 8.0E-18 | – | |
| PANTHER | 6 | 389 | 384 | 1.2E-134 | – | |
| PANTHER | 6 | 389 | 384 | 1.2E-134 | ||
| SUPERFAMILY | 8 | 50 | 43 | 1.44E-9 | – | |
| SMART | 11 | 389 | 379 | 1.0E-90 | ||
| Pfam | 12 | 203 | 192 | 2.4E-11 | ||
| MobiDBLite | 123 | 137 | 15 | - | – | |
| MobiDBLite | 123 | 147 | 25 | - | – | |
| MobiDBLite | 201 | 221 | 21 | - | – | |
| Pfam | 244 | 388 | 145 | 8.3E-30 | ||
| MobiDBLite | 311 | 340 | 30 | - | – | |
| MobiDBLite | 314 | 338 | 25 | - | – | |
| Gene3D | 332 | 389 | 58 | 6.0E-25 | ||
| SUPERFAMILY | 333 | 389 | 57 | 2.01E-21 | ||
| CDD | 344 | 389 | 46 | 2.08184E-26 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIA complex | A component of the transcription machinery of RNA Polymerase II. In humans, TFIIA is a heterotrimer composed of an alpha (P35), beta (P19) and gamma subunits (P12). | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi3g1v0286400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…