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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0286400 |
| Transcript ID | LotjaGi3g1v0286400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIA large subunit; TAIR: AT1G07470.1 Transcription factor IIA, alpha/beta subunit; Swiss-Prot: sp|Q9USU9|TOA1_SCHPO Transcription initiation factor IIA large subunit; TrEMBL-Plants: tr|A0A0B2RCP3|A0A0B2RCP3_GLYSO Transcription initiation factor IIA large subunit; Found in the gene: LotjaGi3g1v0286400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:57886164..57891554) extracted from Lotus japonicus Gifu genome v1.2.
TCTTCTTCATCTCTTCCGCTGAACTCTCTCTTCAATTTCCCTTCCCAAATCTCTCCAATCGAATCGGAGAATTCACAATT CCAACCACTCCCTCTGGTGAATTTTCCATTCTTCGTCATGGCAGCAGCAGCAGCTTCCTCCACCAGCCAGGTCTACATCG ATGTAATCGAGGATGTCATGGTCAAGGTCCGCGACGAGTTCGTCAACAACGGTGGTCCTGGCGAGGAAGTTCTCAAGGAG CTTCAAGCTGTAATAATAATAATTCAGATTATTATTTTTTCATGTTTATATGAATATGCGTTGATTTAGTTTCGATGAAA TTTTCAATCTCAGTTTGTTGGTTTGTTTGGTTGATTTTTTTGGGTTTGGATCAGAGAGATCAATTGTTTTTGTTGACAAT TTGTGTAGATGTGGGAATCAAAGATGATCCAAGCTGGTGTAGTGCTTGGTCCTATAGAAAGGTCCATTGCAGCTAAGCCA ATGCCGGGTGGTCCGATTACACCGGTGCACGATCTTAATGTGCCGTATGAGGGGACTGAGGAGTATGAAACTCCTACAGC TGATTTACTTTTCCCCCCTGTGAGTTTTAACCCAAACCCACATTCCACACTTTAAGTTTTACTAGTAAGGTCTCCACTTT AATGTGTTCTTAGGAGTTTACATTATTGGATTGTTGATATGGGTGGCTTTTGATTGTACAGACGCCATTGCAAACTCCAA TTCAAACCCCTTTACCGGGAACTGTGGATAACTCATATAACATTCCTACTGGACCTAGTGATTACTCTTCTTCTGGCAAT GATGCAGGAGGGAATATTGATGCAAAAGGTGGAAGACCTGGTCCATATATGGTAAGACTCATTTTGCTGGCTAACCAAAT GATATTTTGAAATGTTTTCCCATGTTCAATTGCCTTTTTTCTATGGTTTTAGTTTCTCAAATCCGATTTTCAATTTGTGC ATTTGATTTAATCTGTGGCTCGTTTACAGTGGCTGACCTGAACTCTTTTATTTAAAATAAATCATGTTATGTTCATGAAA CTTATTTCATTCTGTGCATTGATATGTCCTTATAATCTTCTACAGCAGCCCCCTTCTCCATGGATGAACCCGAGGCCTTC ACTTGATGTCAATGTTGGTGAGTCACATTTAAATTCGGAACAAAGTTTTTAATAAAATGGATTTACAGTTTACACTAATG ATGGTGTGTATTACTGTAGCTTACGTGGAAGGGCGGGATGAGCCGGACAGAGGAACTTCAAATCAACCATTGACACAGGT AAGCAAGTTAATGAAGTCTTATAGAAGAATATTCGTGCGCTGTTGTTAAAATTTGAAGAGACTTCCTCGCAATTTCCACG GGAAAATGAAAACGCAATGATTTGTGAAGTTAATGAAGTCTTATAGAAGAATACTCGTGCTCTATTGTTTAAAAAGAATA CCATTGCTCATGTTAGATATTTTTTGTGAAGCCAGCAAATACTGTTAATTTCTTGTTGGAACACTTATTATGAGCATTTA TTTTTATGTAGAATGCCAGGTCTGAACAGTTAGAGGTAGATAGAGGGGGTTAAAAAAACTAGAAGCTGAATTAAATCATT AGAAAATATTTAAATTAAATGGATTGTCATGTTTCATGATTCGCAATAAGACAATATATGGGCATCATTGGATTTATTTG GCCAACCCTGCATAGGGAAAGGGCTTTTGTTTTGTTATTTTCAATTCTGAACTTAAAAGCCATCACATTTAGAAATTAAT CAATAGTTGAAATAATTTCAGGACTTCCTCGCAATTTCCACTGGAAAACGAAAACGCAATGATTTGCCTTCACAATATAA TGCTGGTGGATATATACCTCAGCAAGATGGAGCTGGAGATGTGTCATCTAGAGATTTTGAAATTGAGGTAAGGTTTTTTT TTACCTATTGGCCAGTATCTTCTTTTTAAAAAATTATCTTCTAAGTGTTTACATATCATTTGTAGTTGTTGTATTAGTCA AATTTATTGCTTTTATCATCATTTTTTGTTTGTTAATGAGTTGGTGATTTGACTAAATTGGAGAAATGATATGATAATGT TCTCATAACTTTGAACTTTTTGTTGGATTTGGCACTTTCCTTATCTCTTTATTTGGGGTGGGGTTGAGACTAGATGGGGC AATTCTTTCCATCTCAAGAAAGAGTATTGTGCTGCTTGGAGGCACTTTCTTTGAGTCCTTTTATTCGGATGAGGGTTGTT GTGGGGTTAGAACTAGATGTTTACATGAGGGATGGCTGATAGTGGAGGTATGCCCTGCCATCTCTGGTTCTCTACCTACA TTAGTTATTACAGGAATCTCTGAATTTTTTTGAACATTATGCTGTATAGTGATAGTTTACCTTGAAAACAAACAATTAAC GATTTCTTCAACCACATCAAAACTATAAGGTGTGCTTCCCAAAGTTGTACACTAAAATGAAAGAAAATGCGCCAGTCTCA ATTTCTGGGTCAACTAGATGAATGTTTTACTACTAGGTTAAATCTTTGGCAACATGTTTTTCTTCGCTTTTCATTTACCT TCTTTCTATACAAAAGTTTGTTTTCCCTTTTTTCCCTACTTAATTCATATTCCAAGCATGTTTTTTCAATGTTATTTCAG TCTTTCTCTTTTCTGTGTGCTTCCTGCTTGTATCTCTTTCTTCTGCATAGGATTTGTACTATTGTTGCAGTGGCATGAGA TGATGCAATGAACTTTCCTTTTTCTTTGCTAGGGCTTAGACAGTATAACTGATTTGTCATAATCCAAAATATTGAGCTTT AGCTTGTTTCTTTTCAGATATTCTTGCAGCCTGGATAACTCTAGCTTTTATATAGAAATTCACCTAAGTGCTAGTTTTCA CAAACAGCATAATGACGCAATGCAAATCCGTTTCTATTGTTTTCTCTTTTCCCTTTTAGTTTATAGTTTCTGGGGCATTT GATTGTGACACCAAGTGTTCCGTCATTCATTAACATAGCTTCTGGTTTCCAGGTTGTATTGATATCTTAGTTTAAGTGAA CTTATGCCATCTGGGAGCCACTTGACAATCTGTAAAGTGTTAAGTGTGAACCATATTCTAGTGTTTACCAACTTTAGAAG TCTGATAAAAATTGTCCACTGAATTCTGTTTCTCCAATCCAAAGGAATGTGTTTTCGGATTTTCTTTACTGCTTTACCTT GTTCAACTTTAACTCATTTTGAAACCCAACTTTGCTTGTGTTTACTTTTTTTTAAGTAATTTAACCTTTTGTTTTGTTCT CGTAAATGATAAACAGTTAAGAGGTATGCTAATGTTGTAGACTCTGAAGTGCAGTTAGTCTGTGTGTTCTTTCTTCTCTT CTTCATATGTCTGGCTACTTTAAGGCTAAAGCTAGTTGGGACTTTTGTCATTATGTTGTCAATAGTTCCTCTGTTATTGC TGCACCTGCAACAGCTTGTTTGTTAAGGCTTGCCCTATTTAAGGTTGAAATAAAATAAGGCTTTTTGGGGGAAAAATATA GTTGAGGTCGATATCAACAGCTTGTGATCAGTATTGGCTTTTACAGCCTACAACTCCACATGCATATGCTTTTATTTCTG TCTTCTCGTTTATTCATTGACTTGCTTGGTCGATGGAAAAATTTATTCAGTCGCTGAACTGTTGGACATCAATCATTCAG GTACATGGAGGGGGCATCTCCATCAATTCAAATCATACTAGTTTTAAAGGGAAAATGCTAGCAGATTTGGAGAGACAGGC TTCTAGGATTCCTCAACTTGATGGACCAATTCCTTACGATGATGATATGCTTTCTACTCCTAATGTGAGTAGTGATTCTT ATAACCTCTTTCTGGTGCTCATGAGCTTAGTAATGAAAGAGTTGCCATTTTTATGGATTGAATAGGCTAGTATTTATCTA AAAAGAGAAGATTGGATGATAAAAAGTCCTGTTAATTCAGTCTGCCTGTTAATCTTTTCAGAGTTTTAATTTCTTTATGC TTCTTTTATACTTGCTTGACCATGTTTACATTTTTTTTAAGCTTGACCATGTTTACATGAATCATCTTACTGGGTCTGTT TCATCTTGTTGCAGATTTACAATTACGGAGGAGTTTATACTGAAGACTACAATGTTGCAAATACACCAGCTCCACCTGGT AAATGGAGAACGAGGATAGATAAATTTTAATTTGAATATTTGTGTGGCTAAGTATATTTATCCCTCACACTTGTTGATGA TCCCCCTGTAGAAGTACCAGCAAGCACCCCTGCTCTCGTAGCTCAAAATGAGGTGCCAAATGACGACGACGATGATGATG AACCATTAAATGAAAATGATGATGATGAGTTGGATGACCTGGACCAAGGAGAGGACCAAAATACACATCATCTAGTTTTG GCCCAGTTTGACAAGGTAACATACAGTGCCCTTCCACTTTTGGTGAATTACATGTCAACTGCTATAGTAATATGATATAG TTAATGATTCGGGATTGGATAATTATTTTGCGAGTAATAATCTTGCTACAAATTTTAGGTCACACGTACCAAGAGCAGGT GGAAATGCACACTAAAGGATGGCATCATGCACATAAATAATAAGGATGTTCTGTTCAATAAGGTTTGTTTGAGCCTATTT GTTTTATAGTTTAGTTAAGAGTAATTATGTTTGAGTGTTAAAATTAATTTTGTTTCACATAAAGGTTAGATAGTTTTTCC TAATGTATAAGAAATTTACATGTGACTTAACTTACGTTTAACATTCCGTTAAGAATTCATGCTAAGTGTGCGAGTCAAAA TATACTTATATTTAGACCCGAAAAGTAATTATATCGTACTTTCCAAACAAAACCTCCACAAGTTCATGCTCTCAATCTTA ATTCTATTAAACTTGATTATGATAAACTAAGTTCACTAAACCTAATTCTACTAAACTTAAACGGACCGGCAGTCTTAAGG TGAATCAATGATGATATTGTCTCATTCTTTTAGTGCAAGTGTTTAACAAATTGACACGATGACTTCTGCAGGCGACAGGG GAGTTTGACTTCTAATTTTGCTGGGGCCAGTGCTTTCGTGAAGATTAATTCAGAGGTGCCATTGAGTGTTTCATGATCTT TCATTGATTATAATTATTAAATGAAAATTTGAGGAAAAGAGAAGTTATTTACAGTTTCGTGACTGTTTCAACTTTCAATG TTGGCCTCTTGTACATAAAGGATGAGCAATTTTTCGCCTTTACATTTGTTTAGATATTTGAGGCATTTTATGAAGTCCAC CGTTTGTCAAGTATGTAGTTCCTCTAGTTCTGTGTACTTGGACATTTTGGTTAATTTGAGAATTTCATTCTACCATAATG ATGGTTAATTGGCTTGAACCGTGTCTCTGTT
CDS sequence (LotjaGi3g1v0286400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCAGCAGCAGCTTCCTCCACCAGCCAGGTCTACATCGATGTAATCGAGGATGTCATGGTCAAGGTCCGCGACGA GTTCGTCAACAACGGTGGTCCTGGCGAGGAAGTTCTCAAGGAGCTTCAAGCTATGTGGGAATCAAAGATGATCCAAGCTG GTGTAGTGCTTGGTCCTATAGAAAGGTCCATTGCAGCTAAGCCAATGCCGGGTGGTCCGATTACACCGGTGCACGATCTT AATGTGCCGTATGAGGGGACTGAGGAGTATGAAACTCCTACAGCTGATTTACTTTTCCCCCCTACGCCATTGCAAACTCC AATTCAAACCCCTTTACCGGGAACTGTGGATAACTCATATAACATTCCTACTGGACCTAGTGATTACTCTTCTTCTGGCA ATGATGCAGGAGGGAATATTGATGCAAAAGGTGGAAGACCTGGTCCATATATGCCCCCTTCTCCATGGATGAACCCGAGG CCTTCACTTGATGTCAATGTTGCTTACGTGGAAGGGCGGGATGAGCCGGACAGAGGAACTTCAAATCAACCATTGACACA GGACTTCCTCGCAATTTCCACTGGAAAACGAAAACGCAATGATTTGCCTTCACAATATAATGCTGGTGGATATATACCTC AGCAAGATGGAGCTGGAGATGTGTCATCTAGAGATTTTGAAATTGAGGTACATGGAGGGGGCATCTCCATCAATTCAAAT CATACTAGTTTTAAAGGGAAAATGCTAGCAGATTTGGAGAGACAGGCTTCTAGGATTCCTCAACTTGATGGACCAATTCC TTACGATGATGATATGCTTTCTACTCCTAATATTTACAATTACGGAGGAGTTTATACTGAAGACTACAATGTTGCAAATA CACCAGCTCCACCTGAAGTACCAGCAAGCACCCCTGCTCTCGTAGCTCAAAATGAGGTGCCAAATGACGACGACGATGAT GATGAACCATTAAATGAAAATGATGATGATGAGTTGGATGACCTGGACCAAGGAGAGGACCAAAATACACATCATCTAGT TTTGGCCCAGTTTGACAAGGTCACACGTACCAAGAGCAGGTGGAAATGCACACTAAAGGATGGCATCATGCACATAAATA ATAAGGATGTTCTGTTCAATAAGGCGACAGGGGAGTTTGACTTCTAA
Protein sequence (LotjaGi3g1v0286400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAAAASSTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMIQAGVVLGPIERSIAAKPMPGGPITPVHDL NVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTVDNSYNIPTGPSDYSSSGNDAGGNIDAKGGRPGPYMPPSPWMNPR PSLDVNVAYVEGRDEPDRGTSNQPLTQDFLAISTGKRKRNDLPSQYNAGGYIPQQDGAGDVSSRDFEIEVHGGGISINSN HTSFKGKMLADLERQASRIPQLDGPIPYDDDMLSTPNIYNYGGVYTEDYNVANTPAPPEVPASTPALVAQNEVPNDDDDD DEPLNENDDDELDDLDQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDVLFNKATGEFDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 58 | 57 | 7.9E-18 | – | |
| PANTHER | 6 | 388 | 383 | 1.2E-131 | ||
| PANTHER | 6 | 388 | 383 | 1.2E-131 | – | |
| SUPERFAMILY | 8 | 50 | 43 | 1.44E-9 | – | |
| SMART | 11 | 388 | 378 | 1.3E-90 | ||
| Pfam | 12 | 107 | 96 | 1.3E-10 | ||
| MobiDBLite | 123 | 137 | 15 | - | – | |
| MobiDBLite | 123 | 147 | 25 | - | – | |
| MobiDBLite | 200 | 220 | 21 | - | – | |
| Pfam | 243 | 387 | 145 | 8.0E-30 | ||
| MobiDBLite | 310 | 339 | 30 | - | – | |
| MobiDBLite | 313 | 337 | 25 | - | – | |
| Gene3D | 331 | 388 | 58 | 5.9E-25 | ||
| SUPERFAMILY | 332 | 388 | 57 | 2.01E-21 | ||
| CDD | 343 | 388 | 46 | 2.0553E-26 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIA complex | A component of the transcription machinery of RNA Polymerase II. In humans, TFIIA is a heterotrimer composed of an alpha (P35), beta (P19) and gamma subunits (P12). | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi3g1v0286400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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