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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0287500 |
| Transcript ID | LotjaGi3g1v0287500.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein DETOXIFICATION; TAIR: AT1G51340.1 MATE efflux family protein; Swiss-Prot: sp|Q9SYD6|DTX42_ARATH Protein DETOXIFICATION 42; TrEMBL-Plants: tr|V7BWP1|V7BWP1_PHAVU Protein DETOXIFICATION; Found in the gene: LotjaGi3g1v0287500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:58133361..58134365) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTGTGGTTCTAGGATTAGCACTTGCTTTCATTCTTGGAGCGGGATTGCACTTTGGAGCTAAACTATTTACAAAAGA TGTTGATGTCCTCCACCTCATTAGAGTTGGGGTCCCGGTAATTTATTCATGTTCAAATTGAAAGTGATATTGGTAATCTA TTCATTTCAACCCCCCAAAGAGTGGAACTTATATTGATGTTAATGTTATTTTTTTTTTGTTACAGTTTGTTGCACTCACT CAACCCTTGAATGCTTTGGCTTTTGTATTTGATGGTGTCAACTTTGGAGCATCTGATTTTGCATATTCAGCCTTCTCCAT GGTTTGTATTTATCTTCAATGATTCATCTGCTATTATAAGTGCCATATTTTAAGCTATCCATGCCCCCACCCATTTTTTG TTCCTCTCTAATCTCACTCACGACTCGTCAAAAATTGTCAAGTCTGACCTCGACTAGAGATAACTAATGAAGTACTTATC AATGGGAGGAAAATGCTCACCCATTGCCTCTCAGCTAGATTTTTGGGTGTAGTTAGGCCCAATGCGAATTCTAATATGGT ACTAGAGCCAATTCTCTAGGCTTGACGGGGTGTTAAGTCAACTTATAAATAAGAGGGAAATCCTCATTCCTGTGCTAGAA CAATTTGCAAAAAGAGGATGCAGGAGGGTTAGAGCCAATCTAAATTTTATTTAATTCAATCATGGTATTCTTCATTCTCA GGGTGTGGTAGCAATTATCAGCATCATTTGTCTGCTTATTTTGTCTTCTGCTGGCGGTTTCATTGGAATTTGGGTTGCTT TGACCATCTATATGAGTCTAAGGGCATTTGCTGGCTTCTTGAGGTAATGATTTTCTAATTTTTTTTTCCTGAAGTTTATC TTTGATACTTTTCTTTTCACTGTCAAGACAGTTGATACATCTATGAGGTCAAGACGGTAACTAATGAAAAATGTTGATGC AGGATTGGAACAGGATCAGGACCATGGGAGTTTCTTAGGTGCTGA
CDS sequence (LotjaGi3g1v0287500.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTGGTTCTAGGATTAGCACTTGCTTTCATTCTTGGAGCGGGATTGCACTTTGGAGCTAAACTATTTACAAAAGA TGTTGATGTCCTCCACCTCATTAGAGTTGGGGTCCCGTTTGTTGCACTCACTCAACCCTTGAATGCTTTGGCTTTTGTAT TTGATGGTGTCAACTTTGGAGCATCTGATTTTGCATATTCAGCCTTCTCCATGGGTGTGGTAGCAATTATCAGCATCATT TGTCTGCTTATTTTGTCTTCTGCTGGCGGTTTCATTGGAATTTGGGTTGCTTTGACCATCTATATGAGTCTAAGGGCATT TGCTGGCTTCTTGAGGATTGGAACAGGATCAGGACCATGGGAGTTTCTTAGGTGCTGA
Protein sequence (LotjaGi3g1v0287500.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVVLGLALAFILGAGLHFGAKLFTKDVDVLHLIRVGVPFVALTQPLNALAFVFDGVNFGASDFAYSAFSMGVVAIISII CLLILSSAGGFIGIWVALTIYMSLRAFAGFLRIGTGSGPWEFLRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 124 | 124 | 3.2E-58 | – | |
| PANTHER | 1 | 124 | 124 | 3.2E-58 | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Pfam | 2 | 80 | 79 | 6.8E-6 | ||
| Phobius | 3 | 13 | 11 | - | – | |
| TMHMM | 4 | 25 | 22 | - | – | |
| ProSitePatterns | 9 | 20 | 12 | - | ||
| Phobius | 14 | 20 | 7 | - | – | |
| Phobius | 21 | 35 | 15 | - | – | |
| TMHMM | 32 | 54 | 23 | - | – | |
| Phobius | 36 | 57 | 22 | - | – | |
| Phobius | 58 | 63 | 6 | - | – | |
| Phobius | 64 | 85 | 22 | - | – | |
| TMHMM | 64 | 86 | 23 | - | – | |
| Phobius | 86 | 90 | 5 | - | – | |
| Phobius | 91 | 111 | 21 | - | – | |
| TMHMM | 91 | 113 | 23 | - | – | |
| Phobius | 112 | 125 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Molecular function | Antiporter activity | Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out). | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Xenobiotic transmembrane transporter activity | Enables the directed movement of a xenobiotic, a compound foreign to living organisms, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0287500.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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