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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0289600 |
| Transcript ID | LotjaGi3g1v0289600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase family; TAIR: AT3G20820.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q00874|DR100_ARATH DNA damage-repair/toleration protein DRT100; TrEMBL-Plants: tr|C6ZS03|C6ZS03_SOYBN Leucine rich repeat protein; Found in the gene: LotjaGi3g1v0289600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:59086537..59088258) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGATTGTTAGTGTTAGAATGTTAATAATCCAAGAATATTGTTTAAAGTGTTCTTTATCCCCATAGTTTTCCACTTTT CCCTAGTCAGGCACCATCCCCCTGATCACTTTAAATTTATTGTTAAAAAAATGTTACTACATTTCTCTATTAAAACAAAG GAAGAAGAGAAAATGGTTGACTAGTTCAGTCAAAGACTTCACCAGATAAGAACTGTGTAAGGGACAAAATGGTCATAAAA CTCGAATGAACAGTATAAATGAAGTTGTCAGAGTCTCCAAACTTCCACGCACATTCATAATACACTTCTCTACTTCACAT AGCATTGCAAGCAAAACAGACTCTGTTTCTGTTTCACTATATAAACAACATCACTGAGCAGAGTGCATATAAGTAATTTC CAGTTTCCAGTTTCAATCATAAAATGGGTGGCGTTTGGTTTATACAAGCAGTGCTATTACTGGCGGTCACCACCGCAGTA CAGTCATGTCCGCCGGCGGAGAGGGCGGCGCTGCTGCAGTTCAAGGCAGCCCTCCACGAAACTAAGTTTGATATCTTCAA GACATGGACCGGCGCCGACTGCTGCAACAAGTGGTACGGCATCAGCTGCGACAGAGGGACCCACCGCGTCGCCGACATCA ACCTCCGCGGCGAGTCGGAGGAGAAGATGTTCGAGAAGGCAAACCAAACCGGCTACATGACTGGCCGGATCTCCCCGGCA ATCTGCAAGCTCCACCGCCTCTCCAGCCTCACAATCGCCGATTGGAAGGGAATCTCCGGCGAGATCCCCGGCTGCATAAC CTCACTCCCCTTCCTCCGGATCGTCGACCTTGTCGGTAACCGCATCATCGGTAAAATCCCCTCCGACATCGGCCGGCTCC ACCGCCTCACCGTCCTCAACGTCGCCGACAACGGCATCTCCGGTGCAATCCCAGCCTCCCTTACCGGCCTCCGGAGCCTC ATGCACCTCGACCTCCGCAACAACCGTCTCTCCGGGCCCATCCCACGTGACTTTGGATCACTCCGAATGCTGAGTCGGGC CTTGCTGAGCGGTAACTCAATTAGCGGGCCTATCCCGAGCTCAATTTCTCGTATTTACCGTCTTGCGGACTTAGATCTAT CTCGTAACCAAGTATCTGGGCCGATACCCGAATCGCTCGGTAAAATGGCGGTTCTTTATACCCTCAATTTGGACATGAAC AGGCTTTCCGGACACATTCCGAAAAGTTTGTTCGTGTCTGGCATAAGTGATTTAAACATCAGTCACAATGCGTTGGAAGG TGCTATCCCCGACGCGTTTGGTGAAAGGTCTTATTTCACGGCTTTGGATTTGTCTTATAACAATCTCAAAGGGGCAATCC CAAAATCTATATCCTCTGCTGCGTATATTGGACACTTGGATTTGAGTCACAACCATCTTTGTGGTGCCATTCCAATTGGA TCTCCGTTTGATCATTTGGAAGCTTCGTCCTTTGTTTACAACGATTGCCTCTGTGGGAAGCCACTCAAAGCTTGCTAATT AAGCTAAACTAAACAGATTTCATATAATATGTATACTATGTGTAATTTGTAATAGGAAGAAGAATCATGTGTTTATTAGA TAGTTTAATTGGTTTCTTGCTTGAGTTTGTTATCGTGATCATTATAAATAAAATACAAGATTGAGATTGAATCGTCTTTC ATGCTGTTTTTAGACCAAATCATTCAATACAGTAACTAATTT
CDS sequence (LotjaGi3g1v0289600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGGCGTTTGGTTTATACAAGCAGTGCTATTACTGGCGGTCACCACCGCAGTACAGTCATGTCCGCCGGCGGAGAG GGCGGCGCTGCTGCAGTTCAAGGCAGCCCTCCACGAAACTAAGTTTGATATCTTCAAGACATGGACCGGCGCCGACTGCT GCAACAAGTGGTACGGCATCAGCTGCGACAGAGGGACCCACCGCGTCGCCGACATCAACCTCCGCGGCGAGTCGGAGGAG AAGATGTTCGAGAAGGCAAACCAAACCGGCTACATGACTGGCCGGATCTCCCCGGCAATCTGCAAGCTCCACCGCCTCTC CAGCCTCACAATCGCCGATTGGAAGGGAATCTCCGGCGAGATCCCCGGCTGCATAACCTCACTCCCCTTCCTCCGGATCG TCGACCTTGTCGGTAACCGCATCATCGGTAAAATCCCCTCCGACATCGGCCGGCTCCACCGCCTCACCGTCCTCAACGTC GCCGACAACGGCATCTCCGGTGCAATCCCAGCCTCCCTTACCGGCCTCCGGAGCCTCATGCACCTCGACCTCCGCAACAA CCGTCTCTCCGGGCCCATCCCACGTGACTTTGGATCACTCCGAATGCTGAGTCGGGCCTTGCTGAGCGGTAACTCAATTA GCGGGCCTATCCCGAGCTCAATTTCTCGTATTTACCGTCTTGCGGACTTAGATCTATCTCGTAACCAAGTATCTGGGCCG ATACCCGAATCGCTCGGTAAAATGGCGGTTCTTTATACCCTCAATTTGGACATGAACAGGCTTTCCGGACACATTCCGAA AAGTTTGTTCGTGTCTGGCATAAGTGATTTAAACATCAGTCACAATGCGTTGGAAGGTGCTATCCCCGACGCGTTTGGTG AAAGGTCTTATTTCACGGCTTTGGATTTGTCTTATAACAATCTCAAAGGGGCAATCCCAAAATCTATATCCTCTGCTGCG TATATTGGACACTTGGATTTGAGTCACAACCATCTTTGTGGTGCCATTCCAATTGGATCTCCGTTTGATCATTTGGAAGC TTCGTCCTTTGTTTACAACGATTGCCTCTGTGGGAAGCCACTCAAAGCTTGCTAA
Protein sequence (LotjaGi3g1v0289600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGVWFIQAVLLLAVTTAVQSCPPAERAALLQFKAALHETKFDIFKTWTGADCCNKWYGISCDRGTHRVADINLRGESEE KMFEKANQTGYMTGRISPAICKLHRLSSLTIADWKGISGEIPGCITSLPFLRIVDLVGNRIIGKIPSDIGRLHRLTVLNV ADNGISGAIPASLTGLRSLMHLDLRNNRLSGPIPRDFGSLRMLSRALLSGNSISGPIPSSISRIYRLADLDLSRNQVSGP IPESLGKMAVLYTLNLDMNRLSGHIPKSLFVSGISDLNISHNALEGAIPDAFGERSYFTALDLSYNNLKGAIPKSISSAA YIGHLDLSHNHLCGAIPIGSPFDHLEASSFVYNDCLCGKPLKAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 4 | 364 | 361 | 2.5E-178 | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 4 | 364 | 361 | 2.5E-178 | – | |
| Phobius | 16 | 21 | 6 | - | – | |
| Gene3D | 19 | 88 | 70 | 8.5E-9 | ||
| SUPERFAMILY | 21 | 362 | 342 | 1.16E-66 | – | |
| Phobius | 22 | 364 | 343 | - | – | |
| Pfam | 24 | 63 | 40 | 3.4E-8 | ||
| Gene3D | 89 | 364 | 276 | 1.1E-83 | ||
| Pfam | 154 | 213 | 60 | 8.6E-9 | ||
| Pfam | 275 | 332 | 58 | 6.8E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0289600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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