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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0292200 |
| Transcript ID | LotjaGi3g1v0292200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Long-chain-fatty-acid--AMP ligase FadD28; TAIR: AT1G77220.1 organic solute transporter ostalpha protein (DUF300); Swiss-Prot: sp|Q8YK97|LILIP_NOSS1 Linolenate 9R-lipoxygenase; TrEMBL-Plants: tr|A0A0B2RJD7|A0A0B2RJD7_GLYSO Long-chain-fatty-acid--AMP ligase FadD28; Found in the gene: LotjaGi3g1v0292200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:59515704..59518395) extracted from Lotus japonicus Gifu genome v1.2.
ATGTACCACTTTTTGGGGATCTACCTTGTTGGCTTTCTCAGCTCCCTTGCTGCAGCTATTGCTTACTTCCTATATATAAG ATTCTTCCAGAAACCTGCATCATTCCAACAATTTTCATTTGTTTGCATATGTGGGACTTTCCACTGGATCCCATTTACCA TAATTGCCTATGCAACCATGTTTTCTAATATAACATCAAATCCCATTGCCTTCACCATTTTATTTACCTGCGCATACTTG CTTCATGGTCTCATACTCATCTCTCTCACCTGTGCCTTGACTCGTTTGCTCAAACTTGGTCAAAAGCAAACCCACTTTAA AACCTGGCTTCGAAATCAATTAACCCTTTCCTGCCACCTTAGATTTGCAAAGCTTCTCTCAGGAACAGAAGCCTTCTGCA TATATCTACGCCTTTTGGGTGCAAAAATTGGCAAGCATTGTTCCATTAGAGCCATCAATCCAGTTTCAAACCCAGAGCTT ATGTCAATTGGTCATGGTGTCCATCTTGGTGATTTTAGCCGCATAATCACTGGTTTCCATTATTCCAATGGATATGCTTG TGGGAAGATAGAGGTTCAGGAGAATTCAGTTGCTGGGAGTCAAAGCCTAATCCTCCCTGGTTCTCTTGTAGAAAAGAATG TCATGCTTGGTGCACTTTCAGTTGCTCCAATGAACTCCATACTTCATGAGGGTAGCGTGTACATTGGATCTCAAACCAGA ATCTCTACAAGGAACTCGGGAAGTAATTTGGATGAACGGATCGAGGAGATGGACATGGGATACAAGAAAGTGGTTGGAAA TTTGGCTGCAAATTTGGCTGTCACAACAATGAATGCTAAAGCAAGATACTTCCATCGCATTGGTGTAAGTGGAAAGGGGC ACTTGAAAATATATGACAAACTTGAAGGTGTTCCACAGCACAAGATTTTTCACCCTGGAAAAAGCTACCCTGTCATGGTA CGTCACAGCAATAGCTTAAGTGCTGATGATGATGCCAGGATTGATGCACGTGGCGCAGCTTTGAGGATACTTTCTGATGA ACCCAGTTCTCACCCTCCTATCATTGATTTGACACTGAAAACAGGCAAGGCATTCTATGCACGCACCCTTGGTGATTTTG CAACTTGGCTTGTGTGTGGACTTGCTGCGAGGGAAGAGATGGTCAAGTTAGCCCCACATGTTCGTGAAGCCGTGTGGACT TCCCTTCGGAATGGTGACTCATATGCTGAATTGCATTACCACTCAAACATTTGCAGGCTCATGCGGTTCCAGAATGGACA GGAAATGTATGTCAAATTCAAGTTAAGGCCTCATGACACAAGTATCACTGAGGATACAGGTAAAGGATTTTTATTCACTC ACACACTATTTTTATCGTCCATCATATCTTTTATTTATTTCTCCTCTATTCCTATATGTCGCTGGTGTATGTGTAATTGG TGTGTTAACCGAACTTTTTCCTACAGGTAAGGTTGAGCCAACTGGGATTCTTCCACCAGAGACAGGTGCAATTCCAAGGG ATGAAAAGGACACGCGTCCTTTGCTATTCCTTGCTGATGATTTTCAAAAGCGAGTGAATTCCCCCGGTGGAGTTCGCTAT GTTTTCCAGGTGCAGCTTCAACCAGTGCCAGATGATGAATCCACACGTGATGCTGCACTTGACTGCACCAAACCATGGGA TGAAAAAGAGTTCCCTTACATTGATGTTGGAGAGATTAACATCACTGAAAATCTTTCCAGAGAAGAGTCAGAGAAACTTG AGTTCAATCCTTATCTCAGAAGCCATGAGTTAGATGTCGTCCCTGCTAACTCCATCACACAGAGTGCTTCAATTGATCAT GGTCGTTCATTGATCTACGAGATTTGCCAGCACGTGCGTAACAGACAGCCACTCCCAGAATCCTGGAGAAACCTCGTACA GCAATCCAACGTGAAGGTAGACCTGTCCTGTTGTCCAATGGCAGCAGCAGCAGCATCATCAGCAGCAGCATTGCCTGAAA AGGAACCGTTGCTAAAAAAAGTAACCTTGACAAGAACCAGGTCCCAAATTTTCTCAGGGCTTTTCACTCAGCCATTTCTA CAAACAGCTTTACCGCACATGGTGGTGGGTTTAGCAATTTATGCTCCTCTGAACTTGGTTCTTTACCTTAACAATGTGAA GAATCTCCCACTGCATTGGCTGCTTCCCCTGTTCTGGATTCTCTCAGGTTTCATGGCTGCACTAGCATGTGTTGCAGCCA AATGGGTTTTCGTGGGGAAGAAGAAAGCTGGTGAAACAGTACCCATTTGGAGCAAAAGGGTCCTCATGGATAGCACATGG CAAGCCATTAGAACCGTAATTGGAGACTTTTTCATGGACATGACAAGTGGGTCGTTTTGGTTTGTACTATGGATGAAGCT GATGGGTGCAGACATTGACATGGATCGTGCAGGGTATGTGGATAGCATGGGAGCTTTGTTGAACCCTGAAATGGTGAAGA TTGAGAGTGGGGGGTGTGTGGGAAGAGAAGCTTTGTTGCTTGGACACATTTATGAAGGTGAAGGAATGGTGAAGTTTGGA GAGATCAAAATTGGTGAAGATGGGTTTGTAGGGAGTAGAGCTGTGGTCATGCCTGGTGTGGAAGTGGAAAGTGAGGCTAA TCTTGGTGCCTTGTCTCTTGCCATGAAAGGAGAAATAGTTAGGTCAAGATAA
CDS sequence (LotjaGi3g1v0292200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACCACTTTTTGGGGATCTACCTTGTTGGCTTTCTCAGCTCCCTTGCTGCAGCTATTGCTTACTTCCTATATATAAG ATTCTTCCAGAAACCTGCATCATTCCAACAATTTTCATTTGTTTGCATATGTGGGACTTTCCACTGGATCCCATTTACCA TAATTGCCTATGCAACCATGTTTTCTAATATAACATCAAATCCCATTGCCTTCACCATTTTATTTACCTGCGCATACTTG CTTCATGGTCTCATACTCATCTCTCTCACCTGTGCCTTGACTCGTTTGCTCAAACTTGGTCAAAAGCAAACCCACTTTAA AACCTGGCTTCGAAATCAATTAACCCTTTCCTGCCACCTTAGATTTGCAAAGCTTCTCTCAGGAACAGAAGCCTTCTGCA TATATCTACGCCTTTTGGGTGCAAAAATTGGCAAGCATTGTTCCATTAGAGCCATCAATCCAGTTTCAAACCCAGAGCTT ATGTCAATTGGTCATGGTGTCCATCTTGGTGATTTTAGCCGCATAATCACTGGTTTCCATTATTCCAATGGATATGCTTG TGGGAAGATAGAGGTTCAGGAGAATTCAGTTGCTGGGAGTCAAAGCCTAATCCTCCCTGGTTCTCTTGTAGAAAAGAATG TCATGCTTGGTGCACTTTCAGTTGCTCCAATGAACTCCATACTTCATGAGGGTAGCGTGTACATTGGATCTCAAACCAGA ATCTCTACAAGGAACTCGGGAAGTAATTTGGATGAACGGATCGAGGAGATGGACATGGGATACAAGAAAGTGGTTGGAAA TTTGGCTGCAAATTTGGCTGTCACAACAATGAATGCTAAAGCAAGATACTTCCATCGCATTGGTGTAAGTGGAAAGGGGC ACTTGAAAATATATGACAAACTTGAAGGTGTTCCACAGCACAAGATTTTTCACCCTGGAAAAAGCTACCCTGTCATGGTA CGTCACAGCAATAGCTTAAGTGCTGATGATGATGCCAGGATTGATGCACGTGGCGCAGCTTTGAGGATACTTTCTGATGA ACCCAGTTCTCACCCTCCTATCATTGATTTGACACTGAAAACAGGCAAGGCATTCTATGCACGCACCCTTGGTGATTTTG CAACTTGGCTTGTGTGTGGACTTGCTGCGAGGGAAGAGATGGTCAAGTTAGCCCCACATGTTCGTGAAGCCGTGTGGACT TCCCTTCGGAATGGTGACTCATATGCTGAATTGCATTACCACTCAAACATTTGCAGGCTCATGCGGTTCCAGAATGGACA GGAAATGTATGTCAAATTCAAGTTAAGGCCTCATGACACAAGTATCACTGAGGATACAGGTAAGGTTGAGCCAACTGGGA TTCTTCCACCAGAGACAGGTGCAATTCCAAGGGATGAAAAGGACACGCGTCCTTTGCTATTCCTTGCTGATGATTTTCAA AAGCGAGTGAATTCCCCCGGTGGAGTTCGCTATGTTTTCCAGGTGCAGCTTCAACCAGTGCCAGATGATGAATCCACACG TGATGCTGCACTTGACTGCACCAAACCATGGGATGAAAAAGAGTTCCCTTACATTGATGTTGGAGAGATTAACATCACTG AAAATCTTTCCAGAGAAGAGTCAGAGAAACTTGAGTTCAATCCTTATCTCAGAAGCCATGAGTTAGATGTCGTCCCTGCT AACTCCATCACACAGAGTGCTTCAATTGATCATGGTCGTTCATTGATCTACGAGATTTGCCAGCACGTGCGTAACAGACA GCCACTCCCAGAATCCTGGAGAAACCTCGTACAGCAATCCAACGTGAAGGTAGACCTGTCCTGTTGTCCAATGGCAGCAG CAGCAGCATCATCAGCAGCAGCATTGCCTGAAAAGGAACCGTTGCTAAAAAAAGTAACCTTGACAAGAACCAGGTCCCAA ATTTTCTCAGGGCTTTTCACTCAGCCATTTCTACAAACAGCTTTACCGCACATGGTGGTGGGTTTAGCAATTTATGCTCC TCTGAACTTGGTTCTTTACCTTAACAATGTGAAGAATCTCCCACTGCATTGGCTGCTTCCCCTGTTCTGGATTCTCTCAG GTTTCATGGCTGCACTAGCATGTGTTGCAGCCAAATGGGTTTTCGTGGGGAAGAAGAAAGCTGGTGAAACAGTACCCATT TGGAGCAAAAGGGTCCTCATGGATAGCACATGGCAAGCCATTAGAACCGTAATTGGAGACTTTTTCATGGACATGACAAG TGGGTCGTTTTGGTTTGTACTATGGATGAAGCTGATGGGTGCAGACATTGACATGGATCGTGCAGGGTATGTGGATAGCA TGGGAGCTTTGTTGAACCCTGAAATGGTGAAGATTGAGAGTGGGGGGTGTGTGGGAAGAGAAGCTTTGTTGCTTGGACAC ATTTATGAAGGTGAAGGAATGGTGAAGTTTGGAGAGATCAAAATTGGTGAAGATGGGTTTGTAGGGAGTAGAGCTGTGGT CATGCCTGGTGTGGAAGTGGAAAGTGAGGCTAATCTTGGTGCCTTGTCTCTTGCCATGAAAGGAGAAATAGTTAGGTCAA GATAA
Protein sequence (LotjaGi3g1v0292200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYHFLGIYLVGFLSSLAAAIAYFLYIRFFQKPASFQQFSFVCICGTFHWIPFTIIAYATMFSNITSNPIAFTILFTCAYL LHGLILISLTCALTRLLKLGQKQTHFKTWLRNQLTLSCHLRFAKLLSGTEAFCIYLRLLGAKIGKHCSIRAINPVSNPEL MSIGHGVHLGDFSRIITGFHYSNGYACGKIEVQENSVAGSQSLILPGSLVEKNVMLGALSVAPMNSILHEGSVYIGSQTR ISTRNSGSNLDERIEEMDMGYKKVVGNLAANLAVTTMNAKARYFHRIGVSGKGHLKIYDKLEGVPQHKIFHPGKSYPVMV RHSNSLSADDDARIDARGAALRILSDEPSSHPPIIDLTLKTGKAFYARTLGDFATWLVCGLAAREEMVKLAPHVREAVWT SLRNGDSYAELHYHSNICRLMRFQNGQEMYVKFKLRPHDTSITEDTGKVEPTGILPPETGAIPRDEKDTRPLLFLADDFQ KRVNSPGGVRYVFQVQLQPVPDDESTRDAALDCTKPWDEKEFPYIDVGEINITENLSREESEKLEFNPYLRSHELDVVPA NSITQSASIDHGRSLIYEICQHVRNRQPLPESWRNLVQQSNVKVDLSCCPMAAAAASSAAALPEKEPLLKKVTLTRTRSQ IFSGLFTQPFLQTALPHMVVGLAIYAPLNLVLYLNNVKNLPLHWLLPLFWILSGFMAALACVAAKWVFVGKKKAGETVPI WSKRVLMDSTWQAIRTVIGDFFMDMTSGSFWFVLWMKLMGADIDMDRAGYVDSMGALLNPEMVKIESGGCVGREALLLGH IYEGEGMVKFGEIKIGEDGFVGSRAVVMPGVEVESEANLGALSLAMKGEIVRSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 854 | 854 | 0.0 | – | |
| PANTHER | 1 | 854 | 854 | 0.0 | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 6 | 26 | 21 | - | – | |
| Phobius | 27 | 37 | 11 | - | – | |
| Phobius | 38 | 57 | 20 | - | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 58 | 68 | 11 | - | – | |
| Phobius | 69 | 97 | 29 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 98 | 644 | 547 | - | – | |
| TMHMM | 114 | 136 | 23 | - | – | |
| SUPERFAMILY | 134 | 244 | 111 | 2.77E-13 | ||
| Gene3D | 139 | 242 | 104 | 9.0E-8 | – | |
| SUPERFAMILY | 217 | 585 | 369 | 1.22E-63 | ||
| ProSiteProfiles | 239 | 854 | 616 | 9.754 | ||
| Gene3D | 243 | 593 | 351 | 9.3E-117 | ||
| MobiDBLite | 442 | 462 | 21 | - | – | |
| Pfam | 477 | 548 | 72 | 1.2E-4 | ||
| Phobius | 645 | 668 | 24 | - | – | |
| TMHMM | 653 | 675 | 23 | - | – | |
| Phobius | 669 | 687 | 19 | - | – | |
| TMHMM | 682 | 704 | 23 | - | – | |
| Phobius | 688 | 708 | 21 | - | – | |
| SUPERFAMILY | 705 | 851 | 147 | 1.83E-8 | ||
| Phobius | 709 | 854 | 146 | - | – | |
| TMHMM | 733 | 755 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalase activity | Catalysis of the reaction: 2 hydrogen peroxide = O2 + 2 H2O. | ||
| Biological process | Response to oxidative stress | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. | ||
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0292200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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