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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0293800 |
| Transcript ID | LotjaGi3g1v0293800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT1G65430.1 IBR domain-containing protein; Swiss-Prot: sp|Q8W468|ARI8_ARATH Probable E3 ubiquitin-protein ligase ARI8; TrEMBL-Plants: tr|A0A0B2RE25|A0A0B2RE25_GLYSO Putative E3 ubiquitin-protein ligase ARI7; Found in the gene: LotjaGi3g1v0293800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:60056516..60063812) extracted from Lotus japonicus Gifu genome v1.2.
ATGATTAATCTTTTAGCATCTAATGAAGATAAAGAGAAGTATGACCGTTACCTTCTTAGGTCTTACATTGAAGACAATAA GAAGGTACGTTGTAGATATTGAATTTGGACATCGATAATGATAGTAAACAGATATATACTTTTTGTACTCAATTGCAATC TTGTGGCCACACTTTCTTTTTTTTTTTTGCTAAAATTCATACACCCATAATTATCTGCATGTTATGTTGAGTGGTACACT GGTTCCACAAATTATCACCTGGATACACATGGGTATGAATTCCCAAATCTTGTGATGTTACCCTACCTTCTTTAAATCCT TCTTTTGGATGGCTAGAAATGGATTTGCATGTTGACCTCTTTTTTTTCTCAGTTTCTGTCGGTCATCTTATTTCTTGTGT TTCTTTGTTTTATCCAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAATGGAAAT TTTGATGTATCTTGCCTTTGTGCATATAGCTTCTGCTGGAATGTAAGTTGCATGTAGATTGTTTCATATTGTTATAGCAT TGGGTTTTCCAATACTCTTGTTCCGCTGACTGATCTGGTTTTGGTCTACAGTGTACTGAAGAGGCTCACCGCCCAGTGGA TTGTTGTACTGTGTCAAAATGGATAATGAAAAACAGTGCCGAATCTGAAAACATGAACTGGTACACCATATTATTTTACT TGCCATATTCCGTTGGTGGATATTTTTACTGCTTGTGTGGCCATTAAATTATTGTACATTTTTTAGTGATCAATGGAAAT TATAATATGCATTGCCTAATTTATGTCAAGGTTGATTAGTTTGCTGTTTTTTATGTCAAGTTTTCTGTGGCTATAGCTCT TTCTCTGCCTTCTTTATGTCATAGTTATCGATCGCGGCAAATCGCGGCGCTATCGCGCCGTCGCGTCGCGTCGCGGCCGC TCGCCGCGATTCTGAAGCCATCGCGTCGCGGAACGCCGTCGCGGCTGTCGCGCCGCAAATCGCGGCAAGATCGCGGCCTT ATCGCGTGAGATCGCGGCGCCACAAGAAGAAGATAAGGTACAGTTGTGGAAAAACCTAAATTGCCCTTGAAATTTTATAA TTAGGTTAAACTTTGAGGGCAATTTTGGGATTTCGCACATAAATAAATGAAACGCGCGTTTCATCTCTCCCTATTCATCT TCTTCTTCAGCTTCTTCTTCAGCGACAGAACCCATGGCCACTGCGATCTTCTTCAGCCACCTTCCACCTTCGATCAGCAC CCATGGCCACCGCCGACCTCCGACAAGCATCGTCCAACTTCCGACGAACGCTGTGAGGTGACTTTCAGCCAATCTCCGGC GACCACTGCCCTTGGGCCTCTGTTCTGCTCTGTTTTTTTTTTATTTTTCTTTCCTTTCTTTTCCTCTTAATTTTCTATTC TCAATCAATTCATTTTGTTACCAGTTCTCTCGCATGGCATCCTCTTCCTCCTCTCTTCTCTATCATCTCATCTGTTTGTT CTAGATTTTAAGTTATATTTATCATTTTTTTAGTTATTATATGTATATACTATTATACTATTAATTATATAAAATTATAT ATGAAAAATCAAAATAGCGGCCATCCCGCTATGCCTATCCCGCTATCCCACTTTTGGGGTCGGCCGCTATCCGGGATTGA CTACTATGCTTTATGTGTGTATTCATATTTAATTATTTACATGTGTTTACACTAATTTAGTTTTTGATCAATGACGTAGT GTGATCCATATAGTCGACCTCACTTAGTGGGATAAGACTTTTGTTGTTGTAGTTGTTTACAATAATAGGTATACATGCAT ATATTTTTTGTTTGCTGTATTGAAGGCTGTTGAAATTGGTGATTTTGAGGTGGCCTCCATTTGGACCAGGGGAGGATGTC AATAATTGTGGTCTTTGTTGCATTGGATATTTGACTTTGGTGTGTTAAGAAAGGGTTTTGGAAGCGTCTTAGACATGTTG TGGTAATGAAGGATACTAGTGGCAAACTGAGAAACTAATGCTGAAATTAGTTGATTGCTTTTGAATTTCTTATTTATGAC ATTTATTCCTTTGTAATGATTATGCATATCCTAACTGGGGAATGTTAAGCAAGTGTATTTCTCCTGCATATTTCTTTTCA AAAACACAAGGATCTAATGTTTAAAATAAGCATTTAACTTTAAGCATTGAAACTTTAATTCAGAATTTTTTCTACACGAA TCAGGTTATATGGTGGTTGAATTAGTGCGGATTGCTTACTTCATTTTAAGGAATGAAAACAATGAAGTGCACTAAATAGT GTAGTTTATATTTTGACTTTCTTTACAGTTTTACCTTACCATTCCATGGAATATTAGAGTTCTATCATCTCTAGATCTCC TTCATGCTCATTGATATGCTTCAGTTATTGTAATGCTCTTAAGAGTGAAGGATACTGTCTTGTATTATTGTCCATTATGT ACACTGCCACAATGTGTCTTTTTTGGAAACTTAAGACTTGAGACCCTGAGCTAACTGTTAGGTTAATGATTTTCAGGATA CTTGCTAACTCAAAGCCATGTCCTAAGTGCAAGAGACCAATTGAAAAAAACCAAGGGTGCATGCATATGACATGCACTCC ACCTTGCAAATTTGAATTTTGCTGGTATGCTTTCGAATGATTATTTTGCATTCTTCCTCTTTCCTTCCTTCTCCATTAAT ATTGTTGCTGAGGGTGGGTATCATGCAATTTGAATAATGCTTTTATACTTTTGCACCACATGGCTCAGGGCTTACCTTAT TATTCATATAGTTTGAGTGTATATTGGTGTTAACTGATTTTGATCGATTTTGAAATACACAGGCTATGCCTTGGTGCATG GTCAGACCATGGTGAAAGGACAGGTGGTTTCTATGCTTGCAACCGTTATGAAACTGCTAAACAAGAAGGGGTGGTAAGGG ACATAGAAGTACTCTACCTGATTCAGTTTTCGGGCTACAATTAACTTACTATTCCCCTAGTATATGGTATCTAATTATTA AGTAAATTTTGTTGCGTGTAGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTACACACA TTATTATGAGCGGTGGGCCAGCAACCAATCTGTATGCACTTCTTCATTTCTCTTCTGTATCTTATGTCTACATTTATTTA CACTACAATTTCCAAAGTCATTTTTTTTTTTAATATTTTGATAAAATCCCTTTAGTGTCAAAGACTATATGATTAATTTT CTTTCTATTGCAGTCAAGGCAAAAGGCTCTTGCAGATCTACACCAGATGCAAACTATTCATGTAATTTGCTGATACATTT TCATTGTTCATCCATCTTCATTCTTCACCCCCACCCCTAACAGATCAGGAAATATAAATGCTGTCTCAAAATATAGGAAA AAGAACCTTAGAACAATTTTGTTTTGTTATGTAACTAAACTGACTTAGGCAGGGTCTTAAGTCTTACCCCATTCCTTGTT GCAAATTTGATTTTTTTTTCTTCTTTCCTTTAGTTATCCTTTGATTATTTCACTCACTTGTCTGTTACTTTTGAATTTTG ATGCTCTTGAACAAAAAACATAGCCAAATATACCTTCTACTGGACTGCTGTGGAAACTTTTGCTTCTATGTTTTAAGTAG TAGAGCTTAATATGTGATTCTAGGGATGGTAAAGATGTCCACTAATTATAATTTTTCTTTGGCAGCTTGAGAAACTCAGT GACACCCAGTGCCAGCCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGTTACAGGTATATGAATCTGCTTGTATTGT CAAAATTAACTCCTCTCATCTGTCATGTTCTCACTTAATATTTATATGCCCCTTACCTAAATACATATGTGTGGGGTACA AGTGGCATTCCCAAACGGTAACATTTTTCATGTTTCAATTTTTTTATATTATAACTGAAGTTGATTTTTGAAGATTATTT AAAAATAAAATGAAAATTGTGTTGTGTCCTTCAAGTGTGAAGCCTTATTTGAGAACTGACCAAGTGTATTAGCTGATAAA ATATAATTCTTTTATAGGCAGTGTTAATCGTGTATCGCGGAAAATAGCGAAAAGCCAAAAATCCGCTATTTCAAGTCCTC ATAGCAGAAAATAGCGGTGAGCCCTCAGAGCGCTATGCTATAGTGCTATAGTGCCGCTATAACCGCTATTTGACAACACT GTTTTTAGGAGATATGATGAGAAGTGCTTGACATGATTTGTTCGTAAACATGTCAAGAACTCTGGTATCTCAATAAGGAG TGCCCTAGAATTTATGAATAATATTTTGATGGGAAACCATTAGGTTCACATGATATATGTTAGATATATTGCAAATAAGA TAGGATATCTTATCTCTATTATTAGATATCACAATTTCATGTATATAGGGAAACTAGGATATTATATCTTTTTTGTGCCT TAATGGTTCCTATTATATATAATGGACTACTCTATGTAATTGGAACACACGGATTCACCAAGTTCCTTTCGTCTTTTTCT TGTTATTCAACATGATCGCTCTACCGTCCCCGTTCCTTATTTCATACATTTAGGTGCAGATTTGAGGTTTTTAGTTTTGG TTTTATTGTTTCTTGGGTTGATCTTTCCTTCTTGACTCCCATGGCTGACCCGCCTCCTCCCACGGTTGAGAGCTCTATTT TTACCAGCTATGTTACTAGTTACTACCCCCCTTGCCATTGACAAGTTGGATGACACCAACTATGTTTCTTGGGCTTCCAA CATTATACTTTGGCTTCGGGGACAAGATTATGAAATCCATCTCACTACGAAGGCTGATTCGGTGCCTGAGGCTGATTGTC CTTGATGGAAGAAGAATGATGCTCAACTTGGCAGTCTTGTTAATTCCACCATTACTCCCTCTTTGGAACAGAACTTTCGT TCTCATGACACTTGTGATTCTGTTTGGGCGCAGGCTAAGGTCCTCATTCCCAACGTTTATATGGAGTGTGCCAAAATCTG CTGAATGTCATTACTCCTCATCGTCTTGATGGTTCTCTGGCAGAGTATTTGGGCTGTGCTCGTGGTCTCCTTCATGATTT TAATGAAGTTTTGCCTTCAGCGGCCACACTTGCCAAGGAGATCGAGCAACGACAAACCTTCTTCATACTTCTAGCCTTAT ATGGCCTACCTATGGAGTATTTGTCTGATTGAGATCAGATATTGGGATCTCCTACAATCCCCACTCTTGAGTGCTACTTG GTCTACTTTGCTGCGTGTTCAACCAAAATCGTCCTCTAAAGGGGGAGTACTTCCTACTTTGATACTCCCTCCGTCCCCAT TTATAAGTCACTCTTACCTAATTCTCTAGGATTAAGAAAAGAAGTTGCTAGCATTAAATTTGTAAATTTTTTTATTGAGT TTCCTAGATTACCCATCAACTTCTCTCTCCAAATTAATTTCTTTTTAAAATTACATTATCTCTTTCATATTAAATATGAG GGTAAGTTTGTAAAAAATTATTAAATGCAGCATTGGTATTATAAAGTGACTTATATTTTGAGACTAAAAAAACTCTCAAA AAGTGACTTATATATGGGGACGGAGGGAGTAATTATTATCGATGTTCTTGGTTATTTTTTATGAAAAATCGATCTGATTT ATTTTCTATCTTCCAGACCTTTTATAATGAAATAAAAAATCAGTTTGGTATTCCAATTAGTACTTTGCAAAGTGACAATG CTGGAGAATATATGTCTACACAATTTCAGACTTTCATGGCTGCTAATGGCATGCTTCACCAAACATCTTGTGTTCACACA TCTCAACAAAACGGGGTAGCTGAACGTAAAAATACACACTTGGTTGAAACCACTAGGGCACTCTTACTTCACAATAATGT TCCTCAGCGTTGTTTGGGGGGGGGGGGGATGTTGTGTTTACTGCTTGTTATCGCATTAATAGGATGCTCTCATCTGTCCT CAACAGCTAGGTCCCCTATGTGAGAATAATAAGAATAAGTCATGACCGTTGGTTTTAATAATGAATGGTCAATATTGAAA GTTATTTAATGGTGTAGTGTGATCATTTAAAAAAGTCATGTCATTTTAAAATAGTCACATGACTTGCTTGAATCATGGTT TGATGACCTTAGTTTTAGTTATTGAATTGTAAAACTTTTATATTGCTTTTGAGGCTTTCAGATGCAATTTCTGCCTGTGA CTTTGAGTAATCATTTTTTCGTAACACTGCCCTCAGGACACAGATGAAGTTGCTATTCTTTGAATTATTTTCTGAAGCTA GTCTTATTATGAAATTGTTTGACTTGTAAATTAGATGGCTTCCTGATTTCTGTATCATGTTTGCAGATAGTTGAATGCAG GCGAGTCCTGAAGTGGACATATGCATATGGATACTATTTACTCGAGCAAGAACATGCTAAAAAACAATTCTTTGAATACT TACAAGGTTTTATTTTCAAACTTTAATTTAATTAGAAATGTTTTGCATTTGTGGTGGTTCTTCTACAAATATTACTCTTT TCTTTCTTCAGGTGAGGCAGAATCTGGTTTAGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGCTATTCCTTAACG CTGATGGCCCATCTAAAGACTTCAATGACTTCCGCACTAAACTAGCTGGATTGACCAGGTAAATGTTTTTCCTGTTCCGT TTATCATTTGCCTTGCACCATTAATCAACAATCATATTTTGAATTATGTATGGTAAATCAATAATCATGTCTCGAGTTGA AATTTTATCATGAGAAAAATTACATTTTCTATATTACACCTATCTGAAGTCCTTAATAAAACCCATACGCTTGGTTTCAG ATTTAATTGTTCTCTTTTCTTTCTAAATGTTCTCCATATCGCGGGTCTCTTAGTTTGGCAACTTGGTTTCAGTATGCTTC TGTTGATTATTATTTTTATACGAATAACATCACTAATTATCTTTTCTAATCCATTTGTTTTCGCAGTGTGACTAGAAACT ACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTAGCTGATGTGGATAGTAACGGAGCTGCTTCCAGCAAAGCAACG AGCTCAAAAAATGCTGCAGGGAGCAGTAAAGGGAGAGGTGGTAGAGGAAAGGGAACTAACCGATCTAGCATGTCCAACAG AATGACTGATGACAATCATTGGTCTTGCGAAGCTTGTACCTACGCAAATCTCAAGTCTGCCACCACATGCCAGATGTGCA ATCAACCGCGTCGATGA
CDS sequence (LotjaGi3g1v0293800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTAATCTTTTAGCATCTAATGAAGATAAAGAGAAGTATGACCGTTACCTTCTTAGGTCTTACATTGAAGACAATAA GAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAATGGAAATTTTGATGTATCTT GCCTTTGTGCATATAGCTTCTGCTGGAATTGTACTGAAGAGGCTCACCGCCCAGTGGATTGTTGTACTGTGTCAAAATGG ATAATGAAAAACAGTGCCGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCTAAGTGCAAGAGACC AATTGAAAAAAACCAAGGGTGCATGCATATGACATGCACTCCACCTTGCTATGCCTTGGTGCATGGTCAGACCATGGTGA AAGGACAGGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTACACACATTATTATGAG CGGTGGGCCAGCAACCAATCTTCAAGGCAAAAGGCTCTTGCAGATCTACACCAGATGCAAACTATTCATCTTGAGAAACT CAGTGACACCCAGTGCCAGCCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGTTACAGATAGTTGAATGCAGGCGAG TCCTGAAGTGGACATATGCATATGGATACTATTTACTCGAGCAAGAACATGCTAAAAAACAATTCTTTGAATACTTACAA GGTGAGGCAGAATCTGGTTTAGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGCTATTCCTTAACGCTGATGGCCC ATCTAAAGACTTCAATGACTTCCGCACTAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTA GGGCATTAGAGAATGGTTTAGCTGATGTGGATAGTAACGGAGCTGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTGCA GGGAGCAGTAAAGGGAGAGGTGGTAGAGGAAAGGGAACTAACCGATCTAGCATGTCCAACAGAATGACTGATGACAATCA TTGGTCTTGCGAAGCTTGTACCTACGCAAATCTCAAGTCTGCCACCACATGCCAGATGTGCAATCAACCGCGTCGATGA
Protein sequence (LotjaGi3g1v0293800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MINLLASNEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGNGNFDVSCLCAYSFCWNCTEEAHRPVDCCTVSKW IMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCYALVHGQTMVKGQVYDETERRREMAKNSLERYTHYYE RWASNQSSRQKALADLHQMQTIHLEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLLEQEHAKKQFFEYLQ GEAESGLERLHQCAEKELQLFLNADGPSKDFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDSNGAASSKATSSKNAA GSSKGRGGRGKGTNRSSMSNRMTDDNHWSCEACTYANLKSATTCQMCNQPRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 123 | 123 | 1.4E-141 | ||
| ProSiteProfiles | 1 | 168 | 168 | 30.664 | – | |
| PANTHER | 1 | 123 | 123 | 1.4E-141 | – | |
| SMART | 12 | 74 | 63 | 4.9E-25 | ||
| SUPERFAMILY | 12 | 81 | 70 | 1.45E-11 | – | |
| Pfam | 12 | 74 | 63 | 2.6E-17 | ||
| Gene3D | 70 | 303 | 234 | 2.2E-53 | – | |
| SUPERFAMILY | 93 | 123 | 31 | 1.41E-9 | – | |
| PANTHER | 136 | 293 | 158 | 1.4E-141 | – | |
| PANTHER | 136 | 293 | 158 | 1.4E-141 | ||
| MobiDBLite | 305 | 341 | 37 | - | – | |
| MobiDBLite | 305 | 322 | 18 | - | – | |
| Gene3D | 338 | 372 | 35 | 1.4E-5 | – | |
| ProSiteProfiles | 344 | 372 | 29 | 9.032 | ||
| SUPERFAMILY | 344 | 371 | 28 | 1.07E-6 | ||
| SMART | 346 | 370 | 25 | 5.4E-5 | ||
| ProSitePatterns | 348 | 367 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi3g1v0293800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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