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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0319200 |
| Transcript ID | LotjaGi3g1v0319200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G24830.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8L6Y3|PP396_ARATH Pentatricopeptide repeat-containing protein At5g24830; TrEMBL-Plants: tr|N1NG23|N1NG23_ARAIP Putative glycosyl phosphatidyl inositol transamidase like protein; Found in the gene: LotjaGi3g1v0319200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:67751127..67757775) extracted from Lotus japonicus Gifu genome v1.2.
CATTTATATCACGTCCTAATCCTAACATGTCCCAGCTTCTAATTTTTAGTCAGGTAACACGAAAAAACGACGTCGTTGGC AGTACAGCACTATTTCCCTAGCCAGAGCACTTGTTGTCCACTGCGTTTGGTGCAAGCGCTTCGTCTAATTTTTTTCCGGC GAAGGTGCGCGTTTTTCCGATCATTAACTGCACGGTGATTGGAGTTTTGAGATTCATTCATACATTTTTCTCCTTTTTTT CTTTTTGATTTAGAATAAAAAAATAAAAATACTTTTAACACAAAACTGTGCTCTTTGAAAAACTGCAATTTCTTTTTTCT TCTTATCCTCAAATCGAGTTCCGGAAAATAATAAATGAGGGTGAAGAATAACTACAAAATATGCTGCACCTTGATGCGGT TTCCCTAGGGTTTGTTTTGCCTCCGCCGCCAATCAAATCGCGCAAACCAACCGCCCCTCACCACCGCCAACCGTCGTAAT CCTCGCCGCCGATCCAAACCTTGTCCCTCCTCCGCCTCAGCCTTCAGTTTCCGGCCTCCACCGTGCAATCTCGTCGATCT TCTGCCACATAGCAGCTGAGGGTTATGCAAATGTTCGTTTAGGTATATACATTTTTGTTTATGTTTGCAATTTTCTGTTA TTTCAACTTAATTTGTAGGTGGATGAAATGATTTTTTATAAATAATTTATAAGCTGATTTATTGATCCGAATATGGATTG GGCTGAATCCCCCACTGTTAAAAAGAATATGGATTAGATGCCAAACTTGAATACAGAGAGTTTGATGATTTTGTCTCATA TTGGATGATGCACATTTCTGCTTTTCTGTGATTGTATGCAGTAGAGAGGCTTGTAGACTTGTTATATATATATTCAGGGA TATATGTCTTGTAATGATTATAATTTCATGATGAATGATGCTGATAGATGATATAGTCGCGATGTCTTTTTCTTCCTATC GTTGCCCCTCTCCCTCTTTTCTTATCTGCGATTAACGTTTGCTTGCCATTGTTTGGTTCTGACTTAATTGCTCTCGGTTT GGAAGGTTCCTGTTGCTAGGTGAAGGAGGACGCCGAGGGATACGAGGAGGAGGTCCATCTTCTCAACCATAAGCTCACAA TTGGGAGGTAGGCGGGAGGAGATGCCAATTTTGAAGCTTTTAATATAGTTATTGTCTTCACTATTTTTTATACTGTTTGC TTTGTTTTTTCAAATAATTGTCAGATGGCTTCAACTTCTATCTGAGATAACTTGGGTAAGCTGGATGGCAATGAGTGCAA GTTTATATGTTACCTGCGGTGAAACACATTTGTTTCCTTCGCATAATGTTTTTCAAAGATTCTTGAATTCTGCCATTCAG TCCATCCAGCAATGTGTTGCTCAAATTTTCGGCTCCGAACACGATATTATCGAACATGCCAGGTAATTTTCCCACTTGAC TAAATTATGTTACATTACATCTTTTTCGAGTTTGAAACTGAGATGTCTTTTCTGGAATAGTGTTGGTGATACTGGGCTTA GTTTTTGTGGTAGGATTTGCTGGGAAGAAGATATGGGGCTCTCATCTACTAATTATCTAATGTCAGCTATTGGGAGAAAT TGCCAACTAAACTCCAAAGATTGTTCGTCCTATGACATGAGTTCTGGTCATGAGAAGGGCCAGCATGCTGTTTTCAATGC GTTGGATAATATGCTAAAGGGTAGTTTAGAGCGTCTGAAGATGATGAGGTTAGCCTTGATGTCATAAAATTTCAATTAAT TAGTATCCTTTGTATGGCATGTCATTTTTCAAATTTAAAACTAGTATAGAATAAATATTTGAGATATAAAATATGTGAAG AGATATGTATGAAATGTGGAAATCAAACTATTTTTCATGAAGAAAATTCTGAAAGTAAATTACGTGAACAAAAAAGCACC ATCATTTGTGTCTATTAATTTGATCTGGTGTATCAGAATTTTAATTTGTAACTCCAAGAAAGTTGACATTGACAATTGAA AAATTCCCATGGTTGATTAAATTTTAGTGGAATAAAAATATGTATGAAAAGAAGAGATATCTGATATAGAATGAGTCATG TTGTGCAGTCAGGAGGAGATTAAATTAGGATAAATCTTGCGTTAGACACATTTAAGAGTGATGTCTCATTTAATATATAT GGGTTGATTTCTTTCAACGAGTCAAGTTTGAACAAATTTATGCTAAGAATTATTGCAGAAATATGTTTCTATTTGGTTTA CAGTGGCACTTTGTAATTACTAGTGAAGAAAAAAAATGGAAACAGAAAGCATTTTCATATGCCAAATGTTCCAACCCTGA ATGATGTTCTGTTTTATTTTTTGAGCGGTCAGATAAAACCTTGTTTGCATCCCATTCTACTCTATATTTTGGCTCTAATG TCCAATTTTGCAAGTTTTTGGTAGAGAAATTTTATCTGACAATATTATTGAATAACCATTGGCATGCATGTATGTACATT TGCTTTTTGTTTCTATATGTTTGTATTAGTTCTCAGAAGAATGATGCCACTGATTCCAGAACAAATGACTATTGGGTTTT ACATGAAATATTGCAGGGAAAATATATCTTTGGTAAAGATAGGTCTTCGTGGATATGCATGTGAGTATAGCTACACTGAA CATGCAGCCACTGTTAGGTTGTTGTGCTTGGAAGGTAAGTTGGAAGCAGCTATACGGCTTCAGAGAATAATGGTGCAGAA AGGTTTTCTTCCTGACGTCTTTACCCACAACCATATTGTAAATGGGTTGTGCAAAGTTGGCCTTATGGAGAAAGCGCATG ATTGGCTTGTTAGAGAGATGCTGGAATTTGGTCCTCTTCCCAACCTTGTCACTTACAACACTTTAATTAAGGGCTATTGT ACTGTTAATAGTGTAGATAAAGCTTTGTATCTGTACTCCAGCATGGCAGATACTGGTATTCAGCCAAACAGGGTCACTTG TAACATACTGGTACATGCATTGTGTGAGAATGGTCATCTGAAGGAAGCTAAAAAGATGCTTGAAGAAATACTAAATGATG ATAAGGACATACCTGATTTAGTTACCTCTACTGTATTTATGGATCACTACTTTAAAAATAGAGAATTTATTCAGGCTTTC AGTCTTTGGAACGAGATGCGTCAAAATTCTATGGAAGTAGATGTTGTTGCTTATAATGTTCTTATCAATGGATTATGCAA GAATCAACTGATGAATCTTGCATATGGATATGCATGTGAGATGCTTAAGAAAGGTGTACTTCCTGATGCTTTTACATATA ATATCCTTATCGGTGCTCTTTGGAAGGAAGGGAAAACTAGAGAAGCTTGCTATATTCTTGGAGTTATGTCTAAGATGGGA ATTGTGCCAGATGAAATTTCATACAAGGTTATGATTCGAGGCCTTTGTTTTGATAGAGATATTGTTAGAGCAAAAGAGTT GCTTTGGTGTATGTTGAACAATTTAATGGTGCCCAAGCCTATAGTATGGAACCTAATAATTGACTTGTATGGAAGATGTA AAGATGTCAGTAATGCCATTTTGACAAGAGATCTGATGCTGAAATTCGGTGTTCACCCAAATGTCTTTACTTATAATGCT TTAATTCTTGCACACGTGAAGAGTGGAAATATCTATAGGGCTTACTCTCTGAAGGAAGAAATGCTTACAAAAGGTCTCTT TCCTGATGTGGTTACTTATAATTTGTTGATTGGTGCTGCTTGTAACTTACGAAGTCATGATTTTGCGCTTCAGTTACGTC GTGAGATGGTTCAAAAAGGGCACAGACCAGATTTAATAAGTTATACTGAACTTGTTAGGGAGTCCTGTATTAGAGGCAAC ACGAAAGAGGCAGAAGAGCGTTATGCGAAAATACTGAAATCTGGTTTAATGAATGATCATGTTCCAGTGCAGATTCTTTT TAATATGTACTGCAAATTGAAGGAACCAGTCAAGGCATTTAACTTATTTCAAGACTGGTTGGAAAGTAAACGGGATAGTT AACCTTACTAATCCAGTATTATGCTTGTTGTGACTTCAGACATCACAGAGCAAGCCATGTTTCCTTGAAAGCTACTCTTC ACTTTTATGAAATTCAGACTTTCATTTAAATGTTGGTTGTTTTCAGGCTGTGGCTCATGATAACAAACACTCCAGGTACA TGATGACATTTTCTATAACAATATTTGCTTTCAGTGAAATAATTGTGTTCTAACTATTGCTAAATTTGTACCTAAAATCT TAAAATAGATTGTGTTACATTTTGCTAAATTGTTTGGTTCTGAGCAAATTGCATTTATGGAGGTTGTACGACATAATTGA TCCTAGTGGGGGCACAATAGAGAACACCAACTAGTAATATAAACTTCCATGTTTTGATTTTCATCGTTTATAAAATCTGC CTTGTCATAATATCTTTTTTGGTTTGGAAATTTCTTTTTGCCAAAATGAAATTTGTGCTTCTGTTACTTGATGAGTTTTT TTTTTGTTTGGTCCAACGTAGTTATGCTTCCGGACACAATTCTCTGTTCTGTATTTTGGATTATAATGTTAAACAATTTA GTGGCTTGGTGTGAAAGGTATCCTGTATTCTAGGGTCATTGTTTTTAACGATTTCAGTTTGCTAGTTACTTGTTCGTTCT GTTTGCAGTGACTTGTAGGTCCTTTTAATGGGATGCAGCATTCTTCCCAACTTCAGAAGATGTTATCAGCAGATAAAAGT GGAAGTATAAAATGAGTTTAAGGTTCAGTATGCTTCTTCTCAGGTTGGGTTTTAAAACTTACTATTCTTTTATTGCAACA ATTTTTTTAAAACATTTAATCACATAATTAATTATTATATGGAGGGAAGATGAAAAGACACCAATAGGATTCTAGAGTTC CGCATAATCAGTTGACTCGGAGGTTGCGTGCTCTTTGATAATACTGCTTTTCTTTTTCTTCTGACTGTTATATATTCACA TTGCTGCTCTCATTCTCCTTATGCTTCTACATCTTTTTTTTGGTACTGTAATTTCATCTCACCATGCACCCATGTATTGC CTTCTCTTGCAGACAAAATGCCACCTGTCCCTCTCCATGTGTGCTTCCTGTTATGGTTGTTGTATCATGTCACTGCCTAT CAGAGGAGGCGACTTCCTGGAGAGAACCATGAACACAACAGCAGGGAGATACTACCGTAAATACAATCCTATCCAATAAC AGGTTCTGGGGCAAAGAAGCATCCTTAAAGAGGAGTCCTAATGCATTCAGACACGAAATGTCATTGAGCACACTACTGAG AAGGTTAGCTTCCTTGTTTTTGGCTAAACCTTTATAACAAACCATCATTAGTTTATCCACTCTACCGTTACTTCTGCAGC TGTTTATCTGTTTATTGGTCTATTTAAGTTCTAAGCTCTACCAGATCTTTTACAATTCTTGGGCTCTGCATCAATGATGA CAGTAACCCAGGTCTTTAATTGGAATATATTGATGCTACATACCTTTCTTGGCGCTAATTTCCTGTATTAAACATACAAC ATATATAATTGACCAGAGATGACTGAATTTGCAAATTCAATTGTCAAATCAATCTTCTTCTTAAAAAGGCAAAGAAAGGT TTGCCAGTGCTTGCTTCATTTCTGTATTAGAGTCTTTATTTTATTTTTATATATTCATATTTGTATAATTCCTAATTGTG ATGATCATTATACATTTAATATTCTTTAGGAGCATTTGGAAGAAGTGCTGCATCTTTTTGTGGAGGTTACCATTTTTATG CTACCTGCACAAATAGTCAAATTGAGTCGACTTTGCCTGACCAAAAACCTGAGGAATTAAAGGCACTGCTACTCTGGCTC ATAATGTTGAATGGCTCAGACAGCAGCTTTAGGTGGGTGTGCTAATTTTTTTTATTGTTTGCACGTGTTTGTTAAGCTGC GGCGGGTTTAGCTACTAGAATTGCTTGTAATTTTTCTTGGTTGATAAATAATAGGGCGCAACTGAAATGTAGCTTTATCT CGGTAGAGTCCTTTCCTTGATGAAATGCTTAAATTATTTACATTGCCCCCTCTCAAATTAAAGTAATGTATAATGTAGAT AACCTTATTATGAACTTTTCCTCCCTCTGTATGATTCTCAACATTATTGACATTTAATTTTGAATACCGTATTAACTGTG GAACCTGTGAAGATGAAAATTTTGAGTGAAAGGGTTACTGTTGATGTGATGACTCTGAAAGTTTAGAGAGGAAAACTGTT CATGGGAAGCTTCTTTGTAGTTCTTCACCATTGCCATGATAATTGTTTATGCTAAAAAGGTAGTATAAGGTTTTATAGAT TTCATCTGTGAGGAGAAAACATGGAATTTTTGAGAATTAACAAGAAGTTATTTGCGGCAGCAAGGGATTGGTACCCGGTG GCAGTGACCACCTATTCTTCAACTACATCCTAGCTATGATGGGAATGATTAATGACGCACTTGGAGGGATTAAGGTTAAC TGTTGTAGGGCTTTTGCTTTTGTTTTGATGTATTTTCAGCCTGCTAAAAAGATGTCCAAATAAATTCCATATTAGTAGAT TTACTGCGTTTTTACTGCTCGTTAGAACTGGCTAGACTCGCTTAAAGTTGCTTAAAGCTACTCACAATAGCTCAAGTTCT TACGTGATT
CDS sequence (LotjaGi3g1v0319200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGAGTGCAAGTTTATATGTTACCTGCGGTGAAACACATTTGTTTCCTTCGCATAATGTTTTTCAAAGATTCTT GAATTCTGCCATTCAGTCCATCCAGCAATGTGTTGCTCAAATTTTCGGCTCCGAACACGATATTATCGAACATGCCAGGA TTTGCTGGGAAGAAGATATGGGGCTCTCATCTACTAATTATCTAATGTCAGCTATTGGGAGAAATTGCCAACTAAACTCC AAAGATTGTTCGTCCTATGACATGAGTTCTGGTCATGAGAAGGGCCAGCATGCTGTTTTCAATGCGTTGGATAATATGCT AAAGGGTAGTTTAGAGCGTCTGAAGATGATGAGGGAAAATATATCTTTGGTAAAGATAGGTCTTCGTGGATATGCATGTG AGTATAGCTACACTGAACATGCAGCCACTGTTAGGTTGTTGTGCTTGGAAGGTAAGTTGGAAGCAGCTATACGGCTTCAG AGAATAATGGTGCAGAAAGGTTTTCTTCCTGACGTCTTTACCCACAACCATATTGTAAATGGGTTGTGCAAAGTTGGCCT TATGGAGAAAGCGCATGATTGGCTTGTTAGAGAGATGCTGGAATTTGGTCCTCTTCCCAACCTTGTCACTTACAACACTT TAATTAAGGGCTATTGTACTGTTAATAGTGTAGATAAAGCTTTGTATCTGTACTCCAGCATGGCAGATACTGGTATTCAG CCAAACAGGGTCACTTGTAACATACTGGTACATGCATTGTGTGAGAATGGTCATCTGAAGGAAGCTAAAAAGATGCTTGA AGAAATACTAAATGATGATAAGGACATACCTGATTTAGTTACCTCTACTGTATTTATGGATCACTACTTTAAAAATAGAG AATTTATTCAGGCTTTCAGTCTTTGGAACGAGATGCGTCAAAATTCTATGGAAGTAGATGTTGTTGCTTATAATGTTCTT ATCAATGGATTATGCAAGAATCAACTGATGAATCTTGCATATGGATATGCATGTGAGATGCTTAAGAAAGGTGTACTTCC TGATGCTTTTACATATAATATCCTTATCGGTGCTCTTTGGAAGGAAGGGAAAACTAGAGAAGCTTGCTATATTCTTGGAG TTATGTCTAAGATGGGAATTGTGCCAGATGAAATTTCATACAAGGTTATGATTCGAGGCCTTTGTTTTGATAGAGATATT GTTAGAGCAAAAGAGTTGCTTTGGTGTATGTTGAACAATTTAATGGTGCCCAAGCCTATAGTATGGAACCTAATAATTGA CTTGTATGGAAGATGTAAAGATGTCAGTAATGCCATTTTGACAAGAGATCTGATGCTGAAATTCGGTGTTCACCCAAATG TCTTTACTTATAATGCTTTAATTCTTGCACACGTGAAGAGTGGAAATATCTATAGGGCTTACTCTCTGAAGGAAGAAATG CTTACAAAAGGTCTCTTTCCTGATGTGGTTACTTATAATTTGTTGATTGGTGCTGCTTGTAACTTACGAAGTCATGATTT TGCGCTTCAGTTACGTCGTGAGATGGTTCAAAAAGGGCACAGACCAGATTTAATAAGTTATACTGAACTTGTTAGGGAGT CCTGTATTAGAGGCAACACGAAAGAGGCAGAAGAGCGTTATGCGAAAATACTGAAATCTGGTTTAATGAATGATCATGTT CCAGTGCAGATTCTTTTTAATATGTACTGCAAATTGAAGGAACCAGTCAAGGCATTTAACTTATTTCAAGACTGGTTGGA AAGTAAACGGGATAGTTAA
Protein sequence (LotjaGi3g1v0319200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMSASLYVTCGETHLFPSHNVFQRFLNSAIQSIQQCVAQIFGSEHDIIEHARICWEEDMGLSSTNYLMSAIGRNCQLNS KDCSSYDMSSGHEKGQHAVFNALDNMLKGSLERLKMMRENISLVKIGLRGYACEYSYTEHAATVRLLCLEGKLEAAIRLQ RIMVQKGFLPDVFTHNHIVNGLCKVGLMEKAHDWLVREMLEFGPLPNLVTYNTLIKGYCTVNSVDKALYLYSSMADTGIQ PNRVTCNILVHALCENGHLKEAKKMLEEILNDDKDIPDLVTSTVFMDHYFKNREFIQAFSLWNEMRQNSMEVDVVAYNVL INGLCKNQLMNLAYGYACEMLKKGVLPDAFTYNILIGALWKEGKTREACYILGVMSKMGIVPDEISYKVMIRGLCFDRDI VRAKELLWCMLNNLMVPKPIVWNLIIDLYGRCKDVSNAILTRDLMLKFGVHPNVFTYNALILAHVKSGNIYRAYSLKEEM LTKGLFPDVVTYNLLIGAACNLRSHDFALQLRREMVQKGHRPDLISYTELVRESCIRGNTKEAEERYAKILKSGLMNDHV PVQILFNMYCKLKEPVKAFNLFQDWLESKRDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 111 | 256 | 146 | 1.6E-32 | ||
| ProSiteProfiles | 136 | 170 | 35 | 7.75 | ||
| PANTHER | 150 | 271 | 122 | 1.6E-88 | – | |
| Pfam | 166 | 193 | 28 | 2.6E-7 | ||
| ProSiteProfiles | 171 | 206 | 36 | 10.863 | ||
| TIGRFAM | 173 | 207 | 35 | 2.4E-5 | ||
| Pfam | 206 | 254 | 49 | 5.3E-16 | ||
| ProSiteProfiles | 207 | 241 | 35 | 12.617 | ||
| TIGRFAM | 209 | 242 | 34 | 1.9E-9 | ||
| ProSiteProfiles | 242 | 276 | 35 | 9.832 | ||
| TIGRFAM | 244 | 271 | 28 | 1.6E-5 | ||
| Gene3D | 257 | 370 | 114 | 3.1E-27 | ||
| PANTHER | 277 | 328 | 52 | 1.6E-88 | – | |
| ProSiteProfiles | 278 | 312 | 35 | 8.462 | ||
| Pfam | 280 | 308 | 29 | 0.023 | ||
| TIGRFAM | 283 | 314 | 32 | 3.5E-4 | ||
| PANTHER | 309 | 437 | 129 | 1.6E-88 | – | |
| ProSiteProfiles | 313 | 347 | 35 | 11.126 | ||
| Pfam | 313 | 359 | 47 | 1.2E-14 | ||
| TIGRFAM | 315 | 349 | 35 | 1.3E-6 | ||
| ProSiteProfiles | 348 | 382 | 35 | 11.345 | ||
| TIGRFAM | 350 | 384 | 35 | 7.9E-7 | ||
| Gene3D | 375 | 592 | 218 | 1.2E-36 | ||
| ProSiteProfiles | 383 | 417 | 35 | 8.254 | ||
| Pfam | 385 | 412 | 28 | 0.09 | ||
| PANTHER | 415 | 589 | 175 | 1.6E-88 | – | |
| ProSiteProfiles | 418 | 452 | 35 | 8.934 | ||
| TIGRFAM | 420 | 454 | 35 | 8.2E-4 | ||
| Pfam | 421 | 450 | 30 | 0.055 | ||
| Pfam | 452 | 501 | 50 | 3.9E-13 | ||
| ProSiteProfiles | 453 | 487 | 35 | 11.235 | ||
| TIGRFAM | 455 | 489 | 35 | 1.5E-5 | ||
| ProSiteProfiles | 488 | 522 | 35 | 11.488 | ||
| TIGRFAM | 490 | 523 | 34 | 9.5E-6 | ||
| ProSiteProfiles | 523 | 557 | 35 | 7.772 | ||
| ProSiteProfiles | 558 | 592 | 35 | 6.39 | ||
| Pfam | 564 | 587 | 24 | 0.45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0319200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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