Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0321000 |
Transcript ID | LotjaGi3g1v0321000.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G62670.1 rna processing factor 2; Swiss-Prot: sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial; TrEMBL-Plants: tr|A0A072TFX1|A0A072TFX1_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi3g1v0321000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:68158447..68164240) extracted from Lotus japonicus Gifu genome v1.2.
TGTGATATTCGTTAAAGTTGTGGGTCATTGAAAAAGCTTTGGGTTTCAGAGGGAGCGTGCTAGGGTTTCTACAGAGTTGA AAATGTCACTCAAGAAGCAAGTTGTGCTTCTTTCCAAACCCTGCTTTCTTCTTCCATCAACCTCTTGCTACCATTCTCAT TCTCACTCTCACTCTCACTCTCTGCCTCCTTCCATTCACAATGTTGATGATGCCGTATCCTTATTCAACCGCTTGCTCCA AACGAGTCCTACCCCATCCATCATCGAATTTGGTAAGATTTTAACCACCCTCGTGAAGATGAAGCATTACCCCACTGCTA TTTCCCTTTCTCACCAAATGGAATCTAAGGGAATTATTTCTAACATTGTTACTATGAGCATCTTGATCAATTGTTACTGC CACATAGGTCAAATACCTTTCGCCTTTTCTGTACTCGCTAAACTTCTCAAGAAGGGTTATCAGCCCAACACTGTCACCTT CACTACACTTATCAAAGGCCTCTGTCTTAATGGTCACGTTCAGAGAGCACTGCAATTTCATGATCATGTCGTGGCACAGG GGTTTCACTTGGATCAAGTTAGTTACGGGACCTTGATTAACGGATTATGTAAGATGGGAAAAACAAGAGCTTCATTGCAG TTGCTGCGAAATATTGAAGGGAAATTGGTAAAGCCTAATGTGGTAATGTACAACACTATCATTGATAGCTTGTGCAAAGA TAAACTTGTTAGTGATGCGTTTAATTTATATTCTGAAATGGTTGCCAAGAGAGTTTTACCTGATGTTTTCACTTACAATG CTTTAATATATGGCTTTAGCATTGAGGGTCAATTGAAAGAAGCAATTGATTTGTTCGCTGAAATGGTGATAAAAAACATT GACCCGGATGCTTATACTTTTAATATACTGGTCGATGGTTTATGTAAGGAAGGAAAGGTGAAAGAAGCTAAAACTGTGTT AGCCTTGATGATGAAACAAGGTTTGAAACCTTATGTTGTTACTTATAATTCTTTAATGTATGGGTATTGCCTAGTTAGTG AAGTAAACAAGGCCAAATACATGTTGAACTTCATGGCCCAAAGGGGAGTGACTCCTAATGTCCAGAGCTACAGTATTATC ATTAATGGATTGTGCAAGATTAGAAAGGTGGATGAAGCTTTGAATCTCCTTGCAGAAATGGACTTAAAAAACATTATTCC TGATACAGTCATGTACAGTTCTCTTATTGACGGTTTATGCAAATCAGGGAGAATCTCTCATGCTTGGAAGCTTGTTGATG AGATGCATGTTAAAGGTCAACCAGCCAATATAATCACCTACAATTCTTTATTGGATGCTTTATGCAAAAGTCATCATGTT GACAAGGCAATTGCTTTAATCCAGAAAATTAAAGACCAGGGTATTCAGCTAGATGTGCGCACATACAGTATACTTATGGA TGGACTGTGCAAAGAAGGAAGACTTAAGAATGCACAAGATGTTTTTCAGGATCTTTTAACTAAAGGCTATCATGTAACTG TCCCAATATATACTATTATGATCAATGGGCTTTGTAAAGAGGGTTTGTTTGATGAAGCATTGGCCTTGCTGTCTAAAATG GAAGACAATGGTTGCATGCCTAATGCTATAACTTTCGAAACAATCATTCGTGCTCTATTTGAGAAGGGTGAGAATTATAT GGCAGAGAAACTTCTACGTGAAATGATGGCAAGAGGTCTATTGGAAAAGTAAAAATAGGTAAGTAAGATGCTTTTTTGTT ACACATTATGTTATTTGTAATTTTTATGATTGCCCTATCTTTGCATATTTATTTACAAAGGAAGATGGATTGCACAACGG ACTCACTGTCACTTTAGTCATGAAAAAAAGTCATGTGTTACTAGAATCATTTTAATATTGTAACTATCGTTGGTCTTTTT TTCTTCTTCTTCTTCATGACTAGTTTACTTGTTCTCTTCTTTTTATCAATCGTGGATATGACTGCAACAAGCCATGCATC TGAGTTGAATTTCAGCATCTGTTTCAGAAAGAAATGTATTTTACTTTTTCGCTCAATCTCAGGGTGACAACTACATGCAT GCTAGTTCATTTGGCATTAGAAACAGATCATACCACTGAAAAACGTCTCAATAAAGAAATGGATTGAGGGAATGCAGCTG AGGAGGAAAGAAGAACATAGAATGGCAGAGTCAGGTGCATGAACCAAACATATGGAGTTGGATCTTTTCTTTATTAGAGA AGAGGTCTTCAACAAAAGTCTAATTGTTCATCATGTTTCTTCACTGGATCACAGTGTTAATATCTTCACCAAAGCACTCT TTCATTACGTTACGCTTCAACTCATTGAGAGACAAACTCAATGTGGTTAACAAGTTTTCACTTGTCAACCCTTCTTGAGT TTGAGCGGGAATGTTTGTGTTAGTTTCAGTCCATTAATTAGAATTTTGTTATAACTAATGTCAGCCAATGTTATGCCAGC TTGTAGTTAGTTTTCTGTTTTTTATACAAAATAGTTAGTTTGTGTAGCTTCTCGTGCAAGCTACTTGTATTGCTCATCTA TATAAGTGCATCTTATTGTAAACACAGATTCAGAATATGAGATACAGTTTGTTTCAGCTATCTCTCTGTTTTCAATATCT TTCTCATTTCTCTTATCTTAACAGGCCTTGAAAGACATCCAAATATATGACCAAGTATGCACATGCCCAGATTTTGGCAA GTGTTTCACTGGCTTTGTTACAAATTGGATTGTTTTGCGGGTGGTTTACTTCATGATTAGTTAGCAGTTAGCAAAGTTGG AATCTTCTACTGTCAAGTTCGGCATTTAGTTAACCACCCATGCATATGTGACTTGTCTAATAATTATCAGGATGATTGGC TCAAGATATCAGCAATTATCTGTAGAAATCTGCAGGTTAGAATAACTAATTGATGTTGTCACTAGTTGAACTTTGTTGTT TACAATATAGTTTTACACTCTTACTTATTTACCTGATGGGTATTGATTTGAACCAGCTGCTTTCGTTTATATCATTGTGT ATATCATGTCGTAAATCATGGCATTAATTTCTACTAGTGCTGACTTTTCCCAATAATGGTGAGTAATGGTAACTATGCTT CGATTACTCTATGAGGATTTTTTGAGTGTGTGTTAAAAACCAGCGAAACTTGATCAGAGTGGAAGTATTTCCTTCCTTTA GTTGCACTGCCTCTCCATCATCTGCATCCAAAGCTTTTCAGTCAGAGTGACATCGTCCTAAGCTTCGGAAGCTTATATAC ACTTAAGTGAATTCATAGAAAGCATATCTAATGGTTCTAAATGTATATGACCTATTATTTGTAAATGAATATCTATATAT GTTGAGGCAAGACTAATGACATTTGATTGTATTAGTTATGGTAAGCAGATGATGAAGAAGATATGCCTGTGCTGATGCCA GGGGATGTGATCCCAAAATTCATGGCCTCCAAGGGATGAAAGGATTTCAATTCGTGTGGACAAGGCAGCAACTACTGATT CTTACATTAGCAGGTAAAGAGTTGCTGGTTTTAACGGAAAAGCCTTTCAGAATTCAGGGTACCTTCCATAGATACATGTC ATGGACCTTCTCAATTTATACACATTATCTAAGAATTTGACAGCTTTGTGCTGATTGACATGATATATCAATAGGCGCAA GAAAATACCAAAACAAACGCCTGTTTTATTTTTTCAGAATGGGAAGAAAATGGTTGAAATATCAACATTTCTACTTTGAC TTATTGCATATCTTTGTATTTAAGATTTTCCTTGCTCCCTCTCTCCCCTTTATCAGCATTCAGATTTCAGTGCTAGTTCA TTTAATTTTGCAATCTTCTTCTTAACAGTTGTTTGTTCTTCCTCAGAAATGTGGTTCTTTCTGCATACTTGAACTCATAT TTTGCTGACTCTTCTAGCGTATCAAGGGTATATTTCCTTTGAAATGATCATACCTTTCTTACTCCTTGCCATTTCTGTCC CAAAAAATTGTGTTAAGTGTCAAGGTGGGAACTAGCACACATTCAAGACAACTTTCCTCATTTGATCAGTGTGCAGTAGA CAAGTGTATGTTAAGCACAATCATAGGAGAGAAATAACTGAATGTAACATTTTGTGCTTGTTATCCCACTTGTCCAGTCG GCATAACATTATTAACAGCTAATAATGGCTTACCAATCCAAACATGTCTTTATAAATATGCAAAGTATAGTGGTTTAAAA CTTAAGAAGAACACAGTTTCATGCGTCAAACATGTGAAAATGCCAATGCTCGATAGGTAGAGTAGAGAAAGACCAAGACC CTTTGCTGGGGGCCTATTATATTTATTTCCAACATGAAAAACCAGAAACCCACCCCTTACTTTCTCTCATCTGTATAACT TTCATGAAGCATTGCCTAACTAAGCACCCTTACAAGTATGAATTCTTACAGACTTGTTTAGGGTACAAGACCTAGCTTAT TTCTTAACAGAATTTGGGGACATCATTTGGCATGATGCATGAGAGAGACATAATTGATTTGAATGAAATATCCAAATTTG CAGACTATCTGGCTTGTTAGAAATTAGAACAGCAACTAAAAAACTTGAATTTATAACAACTATGTGATGTTATTGGACAA AGTCTTCACATTTTTATTTTACTTTGAGCTTGTAATTTGAATGTCTTGCTTACAATACATTTCTCCTGCTCTTGTTTCAG TTTCGAAAACAACAGACTTAATAGTCTTGAGCTGAAAAAAGACTGGATTTGCATGTCATCTTAATAGACGAGATTGAAAG AGAAAGAAGTGACTGGTGGTCAGGTTAGAGGCATAGGTGGGTTTGAGTAGGAGAAAACTTTTCTCCTTACAACATTCCCT TTCTGAAATTGCCTCTCACTAATTCTTCTGTTTTACACTCATTATTTTCTCCTATCTTTCACTCTCTCTTGCACATTGAT ACATGTGATGCAAATAATCCTCTTCGAGTTGTTTATTATATTGAAGATCTTTTGTTTATAAAAATATATGGTTGTTTTAA AATATTTTGTGTTCACATATATTTAAGTTTTTAATACTTACATAATATGGAACAGTACAGTCTAGTGACCGTTGATTCTC CATAGAAATGGACTGAGTACTTAAATAGCTTGCTGATACTCTATCAACCGGGCCTGATGAGAATTTGACTTGTCCCCGGT GAAATGTTAGGTCTGCTTATTGGCATTTTTCTACCGTTACCAACTATCTTATCATCAGAGCTTTGACTCTAGATCCTTGC ACTGTTGTTCTGCTTGTTCCTGCATGGTGCTCACCGCAACAATATGAGTGAGAGGCAGGTCACAGTTCTATTTATGACAG GAAAGCTGAACTGAAATCTTTTGATTATTCTAAAGCTGGTGTTAAAGTCCTTCTAGAATCTGGTGTGACAAAGATCCCAT ACCTGTTTTATTGTAACATGTTTTGCACAAATTAGATTAGAGATTCTGAAATTCTTAATTACAGGGCGCGCTATATGTAT GGCCTGAGATTCTGAAATTCTTAAGGAAGTTGTAAACACTTATCAGCCTGGATTTGTATGGTAACAAGTAGGAGAGGAAA ATCCCAAAATCACTTGGCAAGTTGAAGTCACTAAAATTCCTGTAATCATGTTTATGTTGATTTTTCTTTTTCTTGATATC TACCTTTTGAGTGATGTATAAATTGCTGCCTGTTTTGCTCACTCATTTGCAATGATGAGTTAGGCTGCTAAACAACGAGT TGACAGGATCAATAACGAAATAACTCATTCCTTT
CDS sequence (LotjaGi3g1v0321000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACTCAAGAAGCAAGTTGTGCTTCTTTCCAAACCCTGCTTTCTTCTTCCATCAACCTCTTGCTACCATTCTCATTC TCACTCTCACTCTCACTCTCTGCCTCCTTCCATTCACAATGTTGATGATGCCGTATCCTTATTCAACCGCTTGCTCCAAA CGAGTCCTACCCCATCCATCATCGAATTTGGTAAGATTTTAACCACCCTCGTGAAGATGAAGCATTACCCCACTGCTATT TCCCTTTCTCACCAAATGGAATCTAAGGGAATTATTTCTAACATTGTTACTATGAGCATCTTGATCAATTGTTACTGCCA CATAGGTCAAATACCTTTCGCCTTTTCTGTACTCGCTAAACTTCTCAAGAAGGGTTATCAGCCCAACACTGTCACCTTCA CTACACTTATCAAAGGCCTCTGTCTTAATGGTCACGTTCAGAGAGCACTGCAATTTCATGATCATGTCGTGGCACAGGGG TTTCACTTGGATCAAGTTAGTTACGGGACCTTGATTAACGGATTATGTAAGATGGGAAAAACAAGAGCTTCATTGCAGTT GCTGCGAAATATTGAAGGGAAATTGGTAAAGCCTAATGTGGTAATGTACAACACTATCATTGATAGCTTGTGCAAAGATA AACTTGTTAGTGATGCGTTTAATTTATATTCTGAAATGGTTGCCAAGAGAGTTTTACCTGATGTTTTCACTTACAATGCT TTAATATATGGCTTTAGCATTGAGGGTCAATTGAAAGAAGCAATTGATTTGTTCGCTGAAATGGTGATAAAAAACATTGA CCCGGATGCTTATACTTTTAATATACTGGTCGATGGTTTATGTAAGGAAGGAAAGGTGAAAGAAGCTAAAACTGTGTTAG CCTTGATGATGAAACAAGGTTTGAAACCTTATGTTGTTACTTATAATTCTTTAATGTATGGGTATTGCCTAGTTAGTGAA GTAAACAAGGCCAAATACATGTTGAACTTCATGGCCCAAAGGGGAGTGACTCCTAATGTCCAGAGCTACAGTATTATCAT TAATGGATTGTGCAAGATTAGAAAGGTGGATGAAGCTTTGAATCTCCTTGCAGAAATGGACTTAAAAAACATTATTCCTG ATACAGTCATGTACAGTTCTCTTATTGACGGTTTATGCAAATCAGGGAGAATCTCTCATGCTTGGAAGCTTGTTGATGAG ATGCATGTTAAAGGTCAACCAGCCAATATAATCACCTACAATTCTTTATTGGATGCTTTATGCAAAAGTCATCATGTTGA CAAGGCAATTGCTTTAATCCAGAAAATTAAAGACCAGGGTATTCAGCTAGATGTGCGCACATACAGTATACTTATGGATG GACTGTGCAAAGAAGGAAGACTTAAGAATGCACAAGATGTTTTTCAGGATCTTTTAACTAAAGGCTATCATGTAACTGTC CCAATATATACTATTATGATCAATGGGCTTTGTAAAGAGGGTTTGTTTGATGAAGCATTGGCCTTGCTGTCTAAAATGGA AGACAATGGTTGCATGCCTAATGCTATAACTTTCGAAACAATCATTCGTGCTCTATTTGAGAAGGGTGAGAATTATATGG CAGAGAAACTTCTACGTGAAATGATGGCAAGAGGTCTATTGGAAAAGTAA
Protein sequence (LotjaGi3g1v0321000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLKKQVVLLSKPCFLLPSTSCYHSHSHSHSHSLPPSIHNVDDAVSLFNRLLQTSPTPSIIEFGKILTTLVKMKHYPTAI SLSHQMESKGIISNIVTMSILINCYCHIGQIPFAFSVLAKLLKKGYQPNTVTFTTLIKGLCLNGHVQRALQFHDHVVAQG FHLDQVSYGTLINGLCKMGKTRASLQLLRNIEGKLVKPNVVMYNTIIDSLCKDKLVSDAFNLYSEMVAKRVLPDVFTYNA LIYGFSIEGQLKEAIDLFAEMVIKNIDPDAYTFNILVDGLCKEGKVKEAKTVLALMMKQGLKPYVVTYNSLMYGYCLVSE VNKAKYMLNFMAQRGVTPNVQSYSIIINGLCKIRKVDEALNLLAEMDLKNIIPDTVMYSSLIDGLCKSGRISHAWKLVDE MHVKGQPANIITYNSLLDALCKSHHVDKAIALIQKIKDQGIQLDVRTYSILMDGLCKEGRLKNAQDVFQDLLTKGYHVTV PIYTIMINGLCKEGLFDEALALLSKMEDNGCMPNAITFETIIRALFEKGENYMAEKLLREMMARGLLEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
Phobius | 1 | 22 | 22 | - | – | |
Phobius | 1 | 6 | 6 | - | – | |
Phobius | 7 | 17 | 11 | - | – | |
Phobius | 18 | 22 | 5 | - | – | |
Phobius | 23 | 549 | 527 | - | – | |
Gene3D | 38 | 191 | 154 | 1.4E-33 | ||
SUPERFAMILY | 40 | 336 | 297 | 1.73E-7 | – | |
PANTHER | 40 | 261 | 222 | 3.1E-170 | – | |
PANTHER | 40 | 261 | 222 | 3.1E-170 | – | |
ProSiteProfiles | 59 | 93 | 35 | 6.511 | ||
Pfam | 94 | 141 | 48 | 1.4E-12 | ||
ProSiteProfiles | 94 | 128 | 35 | 10.479 | ||
TIGRFAM | 96 | 130 | 35 | 3.0E-4 | ||
ProSiteProfiles | 129 | 163 | 35 | 10.205 | ||
TIGRFAM | 131 | 164 | 34 | 5.5E-5 | ||
PANTHER | 136 | 338 | 203 | 3.1E-170 | – | |
PANTHER | 136 | 338 | 203 | 3.1E-170 | – | |
Pfam | 160 | 189 | 30 | 2.0E-6 | ||
ProSiteProfiles | 164 | 198 | 35 | 10.238 | ||
TIGRFAM | 166 | 192 | 27 | 0.001 | ||
Gene3D | 192 | 263 | 72 | 7.0E-21 | ||
Pfam | 196 | 227 | 32 | 3.8E-11 | ||
ProSiteProfiles | 199 | 233 | 35 | 11.619 | ||
TIGRFAM | 201 | 235 | 35 | 2.2E-8 | ||
Pfam | 233 | 282 | 50 | 2.1E-18 | ||
ProSiteProfiles | 234 | 268 | 35 | 12.266 | ||
TIGRFAM | 236 | 270 | 35 | 1.9E-7 | ||
PANTHER | 252 | 366 | 115 | 3.1E-170 | – | |
PANTHER | 252 | 366 | 115 | 3.1E-170 | – | |
Gene3D | 264 | 329 | 66 | 2.5E-19 | ||
ProSiteProfiles | 269 | 303 | 35 | 13.274 | ||
TIGRFAM | 271 | 303 | 33 | 1.8E-9 | ||
ProSiteProfiles | 304 | 338 | 35 | 10.117 | ||
Pfam | 304 | 352 | 49 | 4.9E-14 | ||
TIGRFAM | 306 | 340 | 35 | 3.3E-7 | ||
Gene3D | 330 | 404 | 75 | 9.8E-24 | ||
ProSiteProfiles | 339 | 373 | 35 | 11.586 | ||
TIGRFAM | 342 | 375 | 34 | 2.7E-7 | ||
PANTHER | 355 | 546 | 192 | 3.1E-170 | – | |
PANTHER | 355 | 546 | 192 | 3.1E-170 | – | |
Pfam | 373 | 422 | 50 | 7.1E-16 | ||
ProSiteProfiles | 374 | 408 | 35 | 11.948 | ||
TIGRFAM | 376 | 405 | 30 | 2.6E-8 | ||
Gene3D | 405 | 473 | 69 | 2.2E-20 | ||
ProSiteProfiles | 409 | 443 | 35 | 11.619 | ||
TIGRFAM | 411 | 445 | 35 | 1.6E-7 | ||
Pfam | 440 | 469 | 30 | 5.4E-10 | ||
ProSiteProfiles | 444 | 478 | 35 | 11.608 | ||
TIGRFAM | 447 | 478 | 32 | 3.1E-5 | ||
Gene3D | 474 | 548 | 75 | 1.3E-18 | ||
ProSiteProfiles | 479 | 513 | 35 | 12.923 | ||
Pfam | 480 | 525 | 46 | 1.2E-13 | ||
TIGRFAM | 482 | 515 | 34 | 1.3E-10 | ||
ProSiteProfiles | 514 | 548 | 35 | 9.098 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0321000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…