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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0321000 |
| Transcript ID | LotjaGi3g1v0321000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G62670.1 rna processing factor 2; Swiss-Prot: sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial; TrEMBL-Plants: tr|A0A072TFX1|A0A072TFX1_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi3g1v0321000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:68158473..68164255) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAGTCCAGGCCCTGTGATATTCGTTAAAGTTGTGGGTCATTGAAAAAGCTTTGGGTTTCAGAGGGAGCGTGCTAGGG TTTCTACAGAGTTGAAAATGTCACTCAAGAAGCAAGTTGTGCTTCTTTCCAAACCCTGCTTTCTTCTTCCATCAACCTCT TGCTACCATTCTCATTCTCACTCTCACTCTCACTCTCTGCCTCCTTCCATTCACAATGTTGATGATGCCGTATCCTTATT CAACCGCTTGCTCCAAACGAGTCCTACCCCATCCATCATCGAATTTGGTAAGATTTTAACCACCCTCGTGAAGATGAAGC ATTACCCCACTGCTATTTCCCTTTCTCACCAAATGGAATCTAAGGGAATTATTTCTAACATTGTTACTATGAGCATCTTG ATCAATTGTTACTGCCACATAGGTCAAATACCTTTCGCCTTTTCTGTACTCGCTAAACTTCTCAAGAAGGGTTATCAGCC CAACACTGTCACCTTCACTACACTTATCAAAGGCCTCTGTCTTAATGGTCACGTTCAGAGAGCACTGCAATTTCATGATC ATGTCGTGGCACAGGGGTTTCACTTGGATCAAGTTAGTTACGGGACCTTGATTAACGGATTATGTAAGATGGGAAAAACA AGAGCTTCATTGCAGTTGCTGCGAAATATTGAAGGGAAATTGGTAAAGCCTAATGTGGTAATGTACAACACTATCATTGA TAGCTTGTGCAAAGATAAACTTGTTAGTGATGCGTTTAATTTATATTCTGAAATGGTTGCCAAGAGAGTTTTACCTGATG TTTTCACTTACAATGCTTTAATATATGGCTTTAGCATTGAGGGTCAATTGAAAGAAGCAATTGATTTGTTCGCTGAAATG GTGATAAAAAACATTGACCCGGATGCTTATACTTTTAATATACTGGTCGATGGTTTATGTAAGGAAGGAAAGGTGAAAGA AGCTAAAACTGTGTTAGCCTTGATGATGAAACAAGGTTTGAAACCTTATGTTGTTACTTATAATTCTTTAATGTATGGGT ATTGCCTAGTTAGTGAAGTAAACAAGGCCAAATACATGTTGAACTTCATGGCCCAAAGGGGAGTGACTCCTAATGTCCAG AGCTACAGTATTATCATTAATGGATTGTGCAAGATTAGAAAGGTGGATGAAGCTTTGAATCTCCTTGCAGAAATGGACTT AAAAAACATTATTCCTGATACAGTCATGTACAGTTCTCTTATTGACGGTTTATGCAAATCAGGGAGAATCTCTCATGCTT GGAAGCTTGTTGATGAGATGCATGTTAAAGGTCAACCAGCCAATATAATCACCTACAATTCTTTATTGGATGCTTTATGC AAAAGTCATCATGTTGACAAGGCAATTGCTTTAATCCAGAAAATTAAAGACCAGGGTATTCAGCTAGATGTGCGCACATA CAGTATACTTATGGATGGACTGTGCAAAGAAGGAAGACTTAAGAATGCACAAGATGTTTTTCAGGATCTTTTAACTAAAG GCTATCATGTAACTGTCCCAATATATACTATTATGATCAATGGGCTTTGTAAAGAGGGTTTGTTTGATGAAGCATTGGCC TTGCTGTCTAAAATGGAAGACAATGGTTGCATGCCTAATGCTATAACTTTCGAAACAATCATTCGTGCTCTATTTGAGAA GGGTGAGAATTATATGGCAGAGAAACTTCTACGTGAAATGATGGCAAGAGGTCTATTGGAAAAGTAAAAATAGGTAAGTA AGATGCTTTTTTGTTACACATTATGTTATTTGTAATTTTTATGATTGCCCTATCTTTGCATATTTATTTACAAAGGAAGA TGGATTGCACAACGGACTCACTGTCACTTTAGTCATGAAAAAAAGTCATGTGTTACTAGAATCATTTTAATATTGTAACT ATCGTTGGTCTTTTTTTCTTCTTCTTCTTCATGACTAGTTTACTTGTTCTCTTCTTTTTATCAATCGTGGATATGACTGC AACAAGCCATGCATCTGAGTTGAATTTCAGCATCTGTTTCAGAAAGAAATGTATTTTACTTTTTCGCTCAATCTCAGGGT GACAACTACATGCATGCTAGTTCATTTGGCATTAGAAACAGATCATACCACTGAAAAACGTCTCAATAAAGAAATGGATT GAGGGAATGCAGCTGAGGAGGAAAGAAGAACATAGAATGGCAGAGTCAGGTGCATGAACCAAACATATGGAGTTGGATCT TTTCTTTATTAGAGAAGAGGTCTTCAACAAAAGTCTAATTGTTCATCATGTTTCTTCACTGGATCACAGTGTTAATATCT TCACCAAAGCACTCTTTCATTACGTTACGCTTCAACTCATTGAGAGACAAACTCAATGTGGTTAACAAGTTTTCACTTGT CAACCCTTCTTGAGTTTGAGCGGGAATGTTTGTGTTAGTTTCAGTCCATTAATTAGAATTTTGTTATAACTAATGTCAGC CAATGTTATGCCAGCTTGTAGTTAGTTTTCTGTTTTTTATACAAAATAGTTAGTTTGTGTAGCTTCTCGTGCAAGCTACT TGTATTGCTCATCTATATAAGTGCATCTTATTGTAAACACAGATTCAGAATATGAGATACAGTTTGTTTCAGCTATCTCT CTGTTTTCAATATCTTTCTCATTTCTCTTATCTTAACAGGCCTTGAAAGACATCCAAATATATGACCAAGTATGCACATG CCCAGATTTTGGCAAGTGTTTCACTGGCTTTGTTACAAATTGGATTGTTTTGCGGGTGGTTTACTTCATGATTAGTTAGC AGTTAGCAAAGTTGGAATCTTCTACTGTCAAGTTCGGCATTTAGTTAACCACCCATGCATATGTGACTTGTCTAATAATT ATCAGGATGATTGGCTCAAGATATCAGCAATTATCTGTAGAAATCTGCAGGTTAGAATAACTAATTGATGTTGTCACTAG TTGAACTTTGTTGTTTACAATATAGTTTTACACTCTTACTTATTTACCTGATGGGTATTGATTTGAACCAGCTGCTTTCG TTTATATCATTGTGTATATCATGTCGTAAATCATGGCATTAATTTCTACTAGTGCTGACTTTTCCCAATAATGGTGAGTA ATGGTAACTATGCTTCGATTACTCTATGAGGATTTTTTGAGTGTGTGTTAAAAACCAGCGAAACTTGATCAGAGTGGAAG TATTTCCTTCCTTTAGTTGCACTGCCTCTCCATCATCTGCATCCAAAGCTTTTCAGTCAGAGTGACATCGTCCTAAGCTT CGGAAGCTTATATACACTTAAGTGAATTCATAGAAAGCATATCTAATGGTTCTAAATGTATATGACCTATTATTTGTAAA TGAATATCTATATATGTTGAGGCAAGACTAATGACATTTGATTGTATTAGTTATGGTAAGCAGATGATGAAGAAGATATG CCTGTGCTGATGCCAGGGGATGTGATCCCAAAATTCATGGCCTCCAAGGGATGAAAGGATTTCAATTCGTGTGGACAAGG CAGCAACTACTGATTCTTACATTAGCAGGTAAAGAGTTGCTGGTTTTAACGGAAAAGCCTTTCAGAATTCAGGGTACCTT CCATAGATACATGTCATGGACCTTCTCAATTTATACACATTATCTAAGAATTTGACAGCTTTGTGCTGATTGACATGATA TATCAATAGGCGCAAGAAAATACCAAAACAAACGCCTGTTTTATTTTTTCAGAATGGGAAGAAAATGGTTGAAATATCAA CATTTCTACTTTGACTTATTGCATATCTTTGTATTTAAGATTTTCCTTGCTCCCTCTCTCCCCTTTATCAGCATTCAGAT TTCAGTGCTAGTTCATTTAATTTTGCAATCTTCTTCTTAACAGTTGTTTGTTCTTCCTCAGAAATGTGGTTCTTTCTGCA TACTTGAACTCATATTTTGCTGACTCTTCTAGCGTATCAAGGGTATATTTCCTTTGAAATGATCATACCTTTCTTACTCC TTGCCATTTCTGTCCCAAAAAATTGTGTTAAGTGTCAAGGTGGGAACTAGCACACATTCAAGACAACTTTCCTCATTTGA TCAGTGTGCAGTAGACAAGTGTATGTTAAGCACAATCATAGGAGAGAAATAACTGAATGTAACATTTTGTGCTTGTTATC CCACTTGTCCAGTCGGCATAACATTATTAACAGCTAATAATGGCTTACCAATCCAAACATGTCTTTATAAATATGCAAAG TATAGTGGTTTAAAACTTAAGAAGAACACAGTTTCATGCGTCAAACATGTGAAAATGCCAATGCTCGATAGGTAGAGTAG AGAAAGACCAAGACCCTTTGCTGGGGGCCTATTATATTTATTTCCAACATGAAAAACCAGAAACCCACCCCTTACTTTCT CTCATCTGTATAACTTTCATGAAGCATTGCCTAACTAAGCACCCTTACAAGTATGAATTCTTACAGACTTGTTTAGGGTA CAAGACCTAGCTTATTTCTTAACAGAATTTGGGGACATCATTTGGCATGATGCATGAGAGAGACATAATTGATTTGAATG AAATATCCAAATTTGCAGACTATCTGGCTTGTTAGAAATTAGAACAGCAACTAAAAAACTTGAATTTATAACAACTATGT GATGTTATTGGACAAAGTCTTCACATTTTTATTTTACTTTGAGCTTGTAATTTGAATGTCTTGCTTACAATACATTTCTC CTGCTCTTGTTTCAGTTTCGAAAACAACAGACTTAATAGTCTTGAGCTGAAAAAAGACTGGATTTGCATGTCATCTTAAT AGACGAGATTGAAAGAGAAAGAAGTGACTGGTGGTCAGGTTAGAGGCATAGGTGGGTTTGAGTAGGAGAAAACTTTTCTC CTTACAACATTCCCTTTCTGAAATTGCCTCTCACTAATTCTTCTGTTTTACACTCATTATTTTCTCCTATCTTTCACTCT CTCTTGCACATTGATACATGTGATGCAAATAATCCTCTTCGAGTTGTTTATTATATTGAAGATCTTTTGTTTATAAAAAT ATATGGTTGTTTTAAAATATTTTGTGTTCACATATATTTAAGTTTTTAATACTTACATAATATGGAACAGTACAGTCTAG TGACCGTTGATTCTCCATAGAAATGGACTGAGTACTTAAATAGCTTGCTGATACTCTATCAACCGGGCCTGATGAGAATT TGACTTGTCCCCGGTGAAATGTTAGGTCTGCTTATTGGCATTTTTCTACCGTTACCAACTATCTTATCATCAGAGCTTTG ACTCTAGATCCTTGCACTGTTGTTCTGCTTGTTCCTGCATGGTGCTCACCGCAACAATATGAGTGAGAGGCAGGTCACAG TTCTATTTATGACAGGAAAGCTGAACTGAAATCTTTTGATTATTCTAAAGCTGGTGTTAAAGTCCTTCTAGAATCTGGTG TGACAAAGATCCCATACCTGTTTTATTGTAACATGTTTTGCACAAATTAGATTAGAGATTCTGAAATTCTTAATTACAGG GCGCGCTATATGTATGGCCTGAGATTCTGAAATTCTTAAGGAAGTTGTAAACACTTATCAGCCTGGATTTGTATGGTAAC AAGTAGGAGAGGAAAATCCCAAAATCACTTGGCAAGTTGAAGTCACTAAAATTCCTGTAATCATGTTTATGTTGATTTTT CTTTTTCTTGATATCTACCTTTTGAGTGATGTATAAATTGCTGCCTGTTTTGCTCACTCATTTGCAATGATGAGTTAGGC TGCTAAACAACGAGTTGACAGGA
CDS sequence (LotjaGi3g1v0321000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACTCAAGAAGCAAGTTGTGCTTCTTTCCAAACCCTGCTTTCTTCTTCCATCAACCTCTTGCTACCATTCTCATTC TCACTCTCACTCTCACTCTCTGCCTCCTTCCATTCACAATGTTGATGATGCCGTATCCTTATTCAACCGCTTGCTCCAAA CGAGTCCTACCCCATCCATCATCGAATTTGGTAAGATTTTAACCACCCTCGTGAAGATGAAGCATTACCCCACTGCTATT TCCCTTTCTCACCAAATGGAATCTAAGGGAATTATTTCTAACATTGTTACTATGAGCATCTTGATCAATTGTTACTGCCA CATAGGTCAAATACCTTTCGCCTTTTCTGTACTCGCTAAACTTCTCAAGAAGGGTTATCAGCCCAACACTGTCACCTTCA CTACACTTATCAAAGGCCTCTGTCTTAATGGTCACGTTCAGAGAGCACTGCAATTTCATGATCATGTCGTGGCACAGGGG TTTCACTTGGATCAAGTTAGTTACGGGACCTTGATTAACGGATTATGTAAGATGGGAAAAACAAGAGCTTCATTGCAGTT GCTGCGAAATATTGAAGGGAAATTGGTAAAGCCTAATGTGGTAATGTACAACACTATCATTGATAGCTTGTGCAAAGATA AACTTGTTAGTGATGCGTTTAATTTATATTCTGAAATGGTTGCCAAGAGAGTTTTACCTGATGTTTTCACTTACAATGCT TTAATATATGGCTTTAGCATTGAGGGTCAATTGAAAGAAGCAATTGATTTGTTCGCTGAAATGGTGATAAAAAACATTGA CCCGGATGCTTATACTTTTAATATACTGGTCGATGGTTTATGTAAGGAAGGAAAGGTGAAAGAAGCTAAAACTGTGTTAG CCTTGATGATGAAACAAGGTTTGAAACCTTATGTTGTTACTTATAATTCTTTAATGTATGGGTATTGCCTAGTTAGTGAA GTAAACAAGGCCAAATACATGTTGAACTTCATGGCCCAAAGGGGAGTGACTCCTAATGTCCAGAGCTACAGTATTATCAT TAATGGATTGTGCAAGATTAGAAAGGTGGATGAAGCTTTGAATCTCCTTGCAGAAATGGACTTAAAAAACATTATTCCTG ATACAGTCATGTACAGTTCTCTTATTGACGGTTTATGCAAATCAGGGAGAATCTCTCATGCTTGGAAGCTTGTTGATGAG ATGCATGTTAAAGGTCAACCAGCCAATATAATCACCTACAATTCTTTATTGGATGCTTTATGCAAAAGTCATCATGTTGA CAAGGCAATTGCTTTAATCCAGAAAATTAAAGACCAGGGTATTCAGCTAGATGTGCGCACATACAGTATACTTATGGATG GACTGTGCAAAGAAGGAAGACTTAAGAATGCACAAGATGTTTTTCAGGATCTTTTAACTAAAGGCTATCATGTAACTGTC CCAATATATACTATTATGATCAATGGGCTTTGTAAAGAGGGTTTGTTTGATGAAGCATTGGCCTTGCTGTCTAAAATGGA AGACAATGGTTGCATGCCTAATGCTATAACTTTCGAAACAATCATTCGTGCTCTATTTGAGAAGGGTGAGAATTATATGG CAGAGAAACTTCTACGTGAAATGATGGCAAGAGGTCTATTGGAAAAGTAA
Protein sequence (LotjaGi3g1v0321000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLKKQVVLLSKPCFLLPSTSCYHSHSHSHSHSLPPSIHNVDDAVSLFNRLLQTSPTPSIIEFGKILTTLVKMKHYPTAI SLSHQMESKGIISNIVTMSILINCYCHIGQIPFAFSVLAKLLKKGYQPNTVTFTTLIKGLCLNGHVQRALQFHDHVVAQG FHLDQVSYGTLINGLCKMGKTRASLQLLRNIEGKLVKPNVVMYNTIIDSLCKDKLVSDAFNLYSEMVAKRVLPDVFTYNA LIYGFSIEGQLKEAIDLFAEMVIKNIDPDAYTFNILVDGLCKEGKVKEAKTVLALMMKQGLKPYVVTYNSLMYGYCLVSE VNKAKYMLNFMAQRGVTPNVQSYSIIINGLCKIRKVDEALNLLAEMDLKNIIPDTVMYSSLIDGLCKSGRISHAWKLVDE MHVKGQPANIITYNSLLDALCKSHHVDKAIALIQKIKDQGIQLDVRTYSILMDGLCKEGRLKNAQDVFQDLLTKGYHVTV PIYTIMINGLCKEGLFDEALALLSKMEDNGCMPNAITFETIIRALFEKGENYMAEKLLREMMARGLLEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 17 | 11 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 549 | 527 | - | – | |
| Gene3D | 38 | 191 | 154 | 1.4E-33 | ||
| SUPERFAMILY | 40 | 336 | 297 | 1.73E-7 | – | |
| PANTHER | 40 | 261 | 222 | 3.1E-170 | – | |
| PANTHER | 40 | 261 | 222 | 3.1E-170 | – | |
| ProSiteProfiles | 59 | 93 | 35 | 6.511 | ||
| Pfam | 94 | 141 | 48 | 1.4E-12 | ||
| ProSiteProfiles | 94 | 128 | 35 | 10.479 | ||
| TIGRFAM | 96 | 130 | 35 | 3.0E-4 | ||
| ProSiteProfiles | 129 | 163 | 35 | 10.205 | ||
| TIGRFAM | 131 | 164 | 34 | 5.5E-5 | ||
| PANTHER | 136 | 338 | 203 | 3.1E-170 | – | |
| PANTHER | 136 | 338 | 203 | 3.1E-170 | – | |
| Pfam | 160 | 189 | 30 | 2.0E-6 | ||
| ProSiteProfiles | 164 | 198 | 35 | 10.238 | ||
| TIGRFAM | 166 | 192 | 27 | 0.001 | ||
| Gene3D | 192 | 263 | 72 | 7.0E-21 | ||
| Pfam | 196 | 227 | 32 | 3.8E-11 | ||
| ProSiteProfiles | 199 | 233 | 35 | 11.619 | ||
| TIGRFAM | 201 | 235 | 35 | 2.2E-8 | ||
| Pfam | 233 | 282 | 50 | 2.1E-18 | ||
| ProSiteProfiles | 234 | 268 | 35 | 12.266 | ||
| TIGRFAM | 236 | 270 | 35 | 1.9E-7 | ||
| PANTHER | 252 | 366 | 115 | 3.1E-170 | – | |
| PANTHER | 252 | 366 | 115 | 3.1E-170 | – | |
| Gene3D | 264 | 329 | 66 | 2.5E-19 | ||
| ProSiteProfiles | 269 | 303 | 35 | 13.274 | ||
| TIGRFAM | 271 | 303 | 33 | 1.8E-9 | ||
| ProSiteProfiles | 304 | 338 | 35 | 10.117 | ||
| Pfam | 304 | 352 | 49 | 4.9E-14 | ||
| TIGRFAM | 306 | 340 | 35 | 3.3E-7 | ||
| Gene3D | 330 | 404 | 75 | 9.8E-24 | ||
| ProSiteProfiles | 339 | 373 | 35 | 11.586 | ||
| TIGRFAM | 342 | 375 | 34 | 2.7E-7 | ||
| PANTHER | 355 | 546 | 192 | 3.1E-170 | – | |
| PANTHER | 355 | 546 | 192 | 3.1E-170 | – | |
| Pfam | 373 | 422 | 50 | 7.1E-16 | ||
| ProSiteProfiles | 374 | 408 | 35 | 11.948 | ||
| TIGRFAM | 376 | 405 | 30 | 2.6E-8 | ||
| Gene3D | 405 | 473 | 69 | 2.2E-20 | ||
| ProSiteProfiles | 409 | 443 | 35 | 11.619 | ||
| TIGRFAM | 411 | 445 | 35 | 1.6E-7 | ||
| Pfam | 440 | 469 | 30 | 5.4E-10 | ||
| ProSiteProfiles | 444 | 478 | 35 | 11.608 | ||
| TIGRFAM | 447 | 478 | 32 | 3.1E-5 | ||
| Gene3D | 474 | 548 | 75 | 1.3E-18 | ||
| ProSiteProfiles | 479 | 513 | 35 | 12.923 | ||
| Pfam | 480 | 525 | 46 | 1.2E-13 | ||
| TIGRFAM | 482 | 515 | 34 | 1.3E-10 | ||
| ProSiteProfiles | 514 | 548 | 35 | 9.098 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0321000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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