Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0322300 |
| Transcript ID | LotjaGi3g1v0322300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lysine-specific histone demethylase 1-like protein; TAIR: AT3G13682.1 LSD1-like2; Swiss-Prot: sp|Q9LID0|LDL2_ARATH Lysine-specific histone demethylase 1 homolog 2; TrEMBL-Plants: tr|A0A151TPE1|A0A151TPE1_CAJCA Lysine-specific histone demethylase 1 isogeny 2; Found in the gene: LotjaGi3g1v0322300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:68630307..68634261) extracted from Lotus japonicus Gifu genome v1.2.
ATCGATTCTTTGGTGTCCGTTATCGTCTTCTTTCAGCTGCAGCTTCCAGGTCCAACCCAATCACTATAACCTCTCTCTCT CAATTTTGAATTCTTCTTCTCGTTTCATTTCTCTGTTGTTCAACACGCTAACACTGCACACTGAACCATTCTCTGCTTCT TTCTTCGCAGAACAACGATCTAGAGCTGTTACCGACGGTTGCCGGAAAGATAAGTAGTAGCAGTAGTCTCTGTAGTTTTC AAATTGAATTTCAAATCTATTTAGTGATTACTGCTTGCCGCTACTTGAATCAAACCTAGCATAGTTGAATTAAAATTTGA AGATTTAGGCGCGTGTTGGAATTTTGAGTTCTTGATGGGAACCCCGAATTCGAATGGCACGGCGCTGAAGCGGTCGCTGA GGAAGAAGGCGGCGAATTCGCGGAGCTACAATGAGGAGCTGATGGATGAGGATGACGTGTTTGAGGCGCAATTGGGTGGG AGGTTGAAGAAGAAGACTAAGACATTGGAAGGTTTGGAGAAAGAAACGGAGAGGGAGGCTATGATTGCGTTTTCGGTAGG TTTTCCGATTGATGCTTTGCTTGAGGATGAGATTAGGGCTGGGGTTGTGAGTGAGTTGGGTGGGGAGGAGCAGAATGATT ATATGGTTGTAAGGAATCATATATTGGCTCTGTGGAGGGGGAATGTGAGGATGTGGTTGACAAAGGGGAAGATTAGAGAA ACAGTGGTCAGCAAGTTTGAGCATTTGCTTCACTCTGCTTATGACTTCCTTTTTCATAATGGGTATATAAATTTCGGTGT TTTGCCGTCGTTTACTTCTCAGTTGCCTGAGTCGACTGAAGGGACTGTGATTGTTATTGGTGCTGGCCTTTCAGGGCTAG CGGCCGCGAGGCAGCTCATGTCGTTTGGCTTCAAGGTGGTGGTTTTGGAGGGTAGGAACCGCCCTGGCGGCAGAGTTTAT ACCCAGAAAGTGGGGGGCGAGGGTAAAATTGCCGCTTTAGATCTTGGTGGGAGTATTATTACTGGAATTCATGCGAACCC GCTGGGAGTTCTGGCTCGACAGCTTTCTATACCGCTTCATAAAGTCAGGGATGATTGCCCTTTGTACAAGCCAGATGGGG CGCCTGTTGATAAGGAGACAGATTCAAAAGTTGAATTCGCATTCAATAGGTTGCTCGACAAAGTTATGGAGCTTAGGCAA ATTATGGGTGGGTTTGGAAGCGATATCTCGCTGGGTGCAGTCTTGGATAAACTCAGGGATGTATATGCTGTGGCGCGAAG TACTGATGAGAAGCAATTGCTTGATTGGAATCTGGCCAATTTAGAATATGCAAATGCTGGATGTCTTTCAAATCTTTCAG CAGCCCATTGGGATCAGGATGATCCTTATGAAATGGGTGGTGATCACTGTTTTCTTGCTGGAGGCAATTGGGGATTGATA AAAGCTTTATGCGAAGGAGTTCCCATCTTCTATGGAAAGACAGTCAGCACCATCAGATATGGAAATGAGGGTGTGGAGGT TATTGCTGGAGATCAAGTCTTTCAAGCAGATTTCGCCTTATGCACTGTGCCTCTTGGAGTTCTGAAAAAGAAGACCATCA GTTTTGAACCTGAATTACCTGCAAGAAAGCTGGAAGCAATTGACAGGCTGGGTTTTGGACTGCTAAACAAAGTGGCTATG GTTTTTCCCCATGTGTTTTGGGGGGAAGATCTGGACACTTTTGGATGTCTCAATGAACATAGTCATCTACGCGGGGAATT CTTCTTATTTTACAGTTACCATACTGTTTCTGGGGCCCCAGGACTAATTGCGCTGGTGGCTGGTGAAGCCGCACAACTAT TTGAAGCCACCGATCCATCCGTTTTGCTCCATCGCGTTTTGACCGTTCTAAGAGGTATCTAACTTTTACTTATGACTTAA TGATGAAAAACTAAATGCCTTGTTGCTGTTATCTTATTTATGGTGTTTGTATGCTGAATGTTACAGGCTTTAATATATTT CACTTTGTAGATTTTCCCACTTGTTTTATTATGTGCTTCCTGTCAAAATCGCATGATTCCCAATTTGAATTGCACGATTT GATATGATTTGGCAAGTTAACAATTCATATCATGTGATGAATCACAAATGGTGTTGAATTGTGTGATACATCCAGGAATC AATTTGGTTTTTGTCATCAATATGAACCACACGATTCATGAATGGTTTCAATCAGCAGTAACTGAAGGAGTGATATACTA AATGCACCCTATTGATTATTTCTTTGTTTTGTAAGCTTATTAAATTTTTTGAATCAATAGTAACTGAAGGAGTGATACTA AATGCACCCTATTGATTATTTCATTGCTTTGTTTTCATTCTCATCAAAGTTGGGACTTTACACAATCACTCACTCTGTGC ACCTTATTTGTTTGTTTTATTGCTCTATTTTCTTTCTTCCAAGATAGGAGCTTGAGGCAGCCACTCGGCTATCTATGAAC ACCGTTTGGGTATATCATTTATTTTTGTTCTAACTTATGTCTTGTGACATATGTATTGCGAGACATATTGTTAAGTTGTT GTGTTGATATATTTCTAGCTATTTTTTACTATGCCTCTGAATCTTGCAGTTTGTTTAATCAGCTTGGCCATCCATGACAT GATTTGATTGCATTTATTTCTGCAGGTATATATAATCCTAAAGGCATCACTGTACCTGATCCAATACAGTCAATTTGCAC AAGATGGGGAAGTGATCCCCTTTCTTATGGTTCGTACTCTCATGTTGGTGTGCAATCATCTGGTGGTGATTATGATATAC TTGCAGAAAACGTGGGGGGCCGACTGTTCTTTGCGGGTGAAGCCACAACTAGGCAATATCCAGCCACCATGCATGGGGCT TTCTTGAGTGGCTTGAGAGAAGCTTCACGCATTTACCAATCAGCCCATGTTCTGGAAAATCCTAGGAAGTCCATGCCTAA GATACCAAACAATAATACATTGGTTGGTTTATTCAAGAAGCCTGATTTGGACTTTGGAAATTTTGCTTTTATATTCGATC ATTCATCAGAAAGTCCACAGTCAATGGGGATTCTGCAAATCACTTTTGCTGGTGCTGAAGAAAGTTCCAAGGAGCTATCA AGCAGCTATCCAGATCCTGCAAAGTTGCCATTGCAGCTTTACACTATTATATCTCGTGAACATGTGCAGCAGCTACAGCA AATTGAAGGAGGGGATGAAAGTAGGCTGTCATATTTGACAAAAAGCCTCGGGTTGAAGCTCATGGGATTGAATGCTTTAT ACAGTACAGGTAACTCGGTAATTGCTAGCATTGCCAGCTCGCGAAAAGGCGGCAGGGGCAGGAATCGCAAGATTACTGCA TAACACCATATCCTAAACAGACATCAGGTTCCCTGTATTTGGTGTGAGTCATCCTTGCGGCTTCTCAGAATAATTGCTTG GAATGAGCATGCCTTTTGTGCTTCTCTGTTGCAAAGTCTTTACATAGACTCAGCAGATCATTGATTTGCTGCTGGAGATA GAAGAAAGCTTTTGAAGGTCTTATCAGATACATGATTCAATACCTGAAGGAAGTCTTGGAGTGTAGCCATAGCAAAATTA GTCCTTTGAAATTTGAGGACAGAGAGATATTAACAGTCCATTTGATGAGTGAAGAATACAGGGATATAGAGAGAGGGGGT ACAAAAAACCCCCAATTGTATCATCATCTATACAAAATCTATGTTCATGTCCCATAGATGGCATTACTGTATTTTTTTAG AGGGTCTTGTTTACCACAATTGGGCTTGTTTCATAATTCTTTCGTTAATTCCTTCATTGGATTAAGGTTTACATGTTACT GGAATAAATTTCATTGGCTACCAACACTAAGGTATACTTTTATTTACATATACAATACAATCCTTGTGCTTATGTTTTTA CTCAAGTTAATGAAAAATCATAATCTAACAAAATC
CDS sequence (LotjaGi3g1v0322300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACCCCGAATTCGAATGGCACGGCGCTGAAGCGGTCGCTGAGGAAGAAGGCGGCGAATTCGCGGAGCTACAATGA GGAGCTGATGGATGAGGATGACGTGTTTGAGGCGCAATTGGGTGGGAGGTTGAAGAAGAAGACTAAGACATTGGAAGGTT TGGAGAAAGAAACGGAGAGGGAGGCTATGATTGCGTTTTCGGTAGGTTTTCCGATTGATGCTTTGCTTGAGGATGAGATT AGGGCTGGGGTTGTGAGTGAGTTGGGTGGGGAGGAGCAGAATGATTATATGGTTGTAAGGAATCATATATTGGCTCTGTG GAGGGGGAATGTGAGGATGTGGTTGACAAAGGGGAAGATTAGAGAAACAGTGGTCAGCAAGTTTGAGCATTTGCTTCACT CTGCTTATGACTTCCTTTTTCATAATGGGTATATAAATTTCGGTGTTTTGCCGTCGTTTACTTCTCAGTTGCCTGAGTCG ACTGAAGGGACTGTGATTGTTATTGGTGCTGGCCTTTCAGGGCTAGCGGCCGCGAGGCAGCTCATGTCGTTTGGCTTCAA GGTGGTGGTTTTGGAGGGTAGGAACCGCCCTGGCGGCAGAGTTTATACCCAGAAAGTGGGGGGCGAGGGTAAAATTGCCG CTTTAGATCTTGGTGGGAGTATTATTACTGGAATTCATGCGAACCCGCTGGGAGTTCTGGCTCGACAGCTTTCTATACCG CTTCATAAAGTCAGGGATGATTGCCCTTTGTACAAGCCAGATGGGGCGCCTGTTGATAAGGAGACAGATTCAAAAGTTGA ATTCGCATTCAATAGGTTGCTCGACAAAGTTATGGAGCTTAGGCAAATTATGGGTGGGTTTGGAAGCGATATCTCGCTGG GTGCAGTCTTGGATAAACTCAGGGATGTATATGCTGTGGCGCGAAGTACTGATGAGAAGCAATTGCTTGATTGGAATCTG GCCAATTTAGAATATGCAAATGCTGGATGTCTTTCAAATCTTTCAGCAGCCCATTGGGATCAGGATGATCCTTATGAAAT GGGTGGTGATCACTGTTTTCTTGCTGGAGGCAATTGGGGATTGATAAAAGCTTTATGCGAAGGAGTTCCCATCTTCTATG GAAAGACAGTCAGCACCATCAGATATGGAAATGAGGGTGTGGAGGTTATTGCTGGAGATCAAGTCTTTCAAGCAGATTTC GCCTTATGCACTGTGCCTCTTGGAGTTCTGAAAAAGAAGACCATCAGTTTTGAACCTGAATTACCTGCAAGAAAGCTGGA AGCAATTGACAGGCTGGGTTTTGGACTGCTAAACAAAGTGGCTATGGTTTTTCCCCATGTGTTTTGGGGGGAAGATCTGG ACACTTTTGGATGTCTCAATGAACATAGTCATCTACGCGGGGAATTCTTCTTATTTTACAGTTACCATACTGTTTCTGGG GCCCCAGGACTAATTGCGCTGGTGGCTGGTGAAGCCGCACAACTATTTGAAGCCACCGATCCATCCGTTTTGCTCCATCG CGTTTTGACCGTTCTAAGAGGTATATATAATCCTAAAGGCATCACTGTACCTGATCCAATACAGTCAATTTGCACAAGAT GGGGAAGTGATCCCCTTTCTTATGGTTCGTACTCTCATGTTGGTGTGCAATCATCTGGTGGTGATTATGATATACTTGCA GAAAACGTGGGGGGCCGACTGTTCTTTGCGGGTGAAGCCACAACTAGGCAATATCCAGCCACCATGCATGGGGCTTTCTT GAGTGGCTTGAGAGAAGCTTCACGCATTTACCAATCAGCCCATGTTCTGGAAAATCCTAGGAAGTCCATGCCTAAGATAC CAAACAATAATACATTGGTTGGTTTATTCAAGAAGCCTGATTTGGACTTTGGAAATTTTGCTTTTATATTCGATCATTCA TCAGAAAGTCCACAGTCAATGGGGATTCTGCAAATCACTTTTGCTGGTGCTGAAGAAAGTTCCAAGGAGCTATCAAGCAG CTATCCAGATCCTGCAAAGTTGCCATTGCAGCTTTACACTATTATATCTCGTGAACATGTGCAGCAGCTACAGCAAATTG AAGGAGGGGATGAAAGTAGGCTGTCATATTTGACAAAAAGCCTCGGGTTGAAGCTCATGGGATTGAATGCTTTATACAGT ACAGGTAACTCGGTAATTGCTAGCATTGCCAGCTCGCGAAAAGGCGGCAGGGGCAGGAATCGCAAGATTACTGCATAA
Protein sequence (LotjaGi3g1v0322300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTPNSNGTALKRSLRKKAANSRSYNEELMDEDDVFEAQLGGRLKKKTKTLEGLEKETEREAMIAFSVGFPIDALLEDEI RAGVVSELGGEEQNDYMVVRNHILALWRGNVRMWLTKGKIRETVVSKFEHLLHSAYDFLFHNGYINFGVLPSFTSQLPES TEGTVIVIGAGLSGLAAARQLMSFGFKVVVLEGRNRPGGRVYTQKVGGEGKIAALDLGGSIITGIHANPLGVLARQLSIP LHKVRDDCPLYKPDGAPVDKETDSKVEFAFNRLLDKVMELRQIMGGFGSDISLGAVLDKLRDVYAVARSTDEKQLLDWNL ANLEYANAGCLSNLSAAHWDQDDPYEMGGDHCFLAGGNWGLIKALCEGVPIFYGKTVSTIRYGNEGVEVIAGDQVFQADF ALCTVPLGVLKKKTISFEPELPARKLEAIDRLGFGLLNKVAMVFPHVFWGEDLDTFGCLNEHSHLRGEFFLFYSYHTVSG APGLIALVAGEAAQLFEATDPSVLLHRVLTVLRGIYNPKGITVPDPIQSICTRWGSDPLSYGSYSHVGVQSSGGDYDILA ENVGGRLFFAGEATTRQYPATMHGAFLSGLREASRIYQSAHVLENPRKSMPKIPNNNTLVGLFKKPDLDFGNFAFIFDHS SESPQSMGILQITFAGAEESSKELSSSYPDPAKLPLQLYTIISREHVQQLQQIEGGDESRLSYLTKSLGLKLMGLNALYS TGNSVIASIASSRKGGRGRNRKITA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 12 | 742 | 731 | 0.0 | – | |
| PANTHER | 12 | 742 | 731 | 0.0 | – | |
| ProSiteProfiles | 55 | 156 | 102 | 17.297 | ||
| SUPERFAMILY | 57 | 159 | 103 | 7.62E-21 | ||
| Gene3D | 70 | 150 | 81 | 3.0E-14 | ||
| Pfam | 73 | 147 | 75 | 6.7E-11 | ||
| SUPERFAMILY | 162 | 598 | 437 | 2.22E-74 | ||
| Gene3D | 165 | 595 | 431 | 3.3E-100 | ||
| Pfam | 172 | 596 | 425 | 5.4E-88 | ||
| Gene3D | 247 | 552 | 306 | 3.3E-100 | – | |
| SUPERFAMILY | 433 | 546 | 114 | 1.18E-26 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0322300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…