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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0324800 |
Transcript ID | LotjaGi3g1v0324800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT5G54270.1 light-harvesting chlorophyll B-binding protein 3; Swiss-Prot: sp|P27489|CB23_SOLLC Chlorophyll a-b binding protein 13, chloroplastic; TrEMBL-Plants: tr|V7AJY3|V7AJY3_PHAVU Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi3g1v0324800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:69105656..69107992) extracted from Lotus japonicus Gifu genome v1.2.
CAAACTTTCCACTCTTGTGTTCCTTCCTAGCCACACATCCCTCTGATTTTCTTTCCCTACATAGTACATATGAATATATG ATGTTACATGCACACCACACATTGTCTTTTCTTCAGGTGAATTAAGGATTCAAGTGAAGTACTTGGAAGCCATGGCATTG GCAGCAACACTGATGGCAGCCACAGCAAGCACCAGCACTGTTCTTAAACCAACCCCTTTCCTTGGTCAAAGTAGGGGAAC CAACACCAACCCTCTTAGAGATGTTGTCTCCATGGGACCTGGGAAATACACCATGGTACTTTTATGATGAAAAAGTGGCC ACTTTTCACATTCTTTCTCAATTCTCACTGACTTTTAGTTTACTGGTTGTGTTGTGTTGCTTATGGAGTGTTGATGAATG AGCAGGGAAATGAATTGTGGTATGGACCAGACAGAGTGAAATACTTAGGACCCTTTTCAGCTCAGACCCCTTCATACTTG ACTGGAGAATTCCCAGGGGACTATGGATGGGACACTGCTGGATTGTCTGCTGATCCTGAAGCATTTGCCAGGAACAGGGC TCTTGAGGTTAGTTTATTAGTCTATATAGTGTGCCTTCTTCTTATTATTCCTTTTATTAAAGCTACTAATGTATCTTCAC CTATCAACTTAAGCTCATGAGAAATTTTGTTCATAATATGTATTGCATTTATGCTTACATGAAATCATTAATGTTTCTTT ACCTAATAACTTAAAGCTTCTTAGAGAATTTACACCCCAAAAGATTTAACTGTTCAATGGTTCTAAGAGAAAAATCGCAT TAGTTTTATCTGCACAAACAATCCCTTCTTTATCATTAAAAAGAGTTATTTTCATTTGCTGATACCTTTAGTGAGTGCTT GATTCCCCTCAAAATCATTTCTCATTGAGTAAAATCACTTTTGAATGACAATACAAGGCATGTTTGGATTCACGTTCCGA TCTTCTGGAATCAATTCTGGCTACCATAAAAGGTACTAGGAGTAGCTTGTCCCATAATCAGTTCTCCTTCCATCTTGGAA ATAAACCATATATCCAAACATGCACATAGATGTTTAAGTGTCATTTTGGAGAATTGATTTCAGTCCCAAAATCAATTCTG CATAGAAGCTAGATAGAGTAGCTTCCACGTTAAAAAATCAATTGTAGGATTTTATAACTGAATTTAACATTACCCTACAA AAATCATTTTTTTTCCTAAATGTATTAGAACATAAATAACTTCATTTTCAACTCACTTTAACTTGATTCAAACATTCACT TAGTAGGTTCTAAAGTGATATTATTTCCCGAAACAAATATAGTGATGGTCTAGTCTTAAGAAACAGCTAGTGCTAGGAAA ACCACCAGAAATCCTGAACTGAAATTTCTCTTCTGCAGTAAGAATTTTCTTTTTTGTTGTAAAAAGCAACCATAAAAGAA CAAATATGATTTATCATTGATTTAATCTGTTATTGTAAGATATGCTAAATTCTTATCTGAAACAAGGTGATTCATGGACG TTGGGCCATGCTTGGAGCACTAGGCTGCATCACCCCTGAAGTACTTGAAAAGTGGGTTAGAGTGGACTTCAAAGAGCCAG TTTGGTTCAAAGCTGGAGCTCAGATATTCTCAGAAGGTGGCCTTGACTACTTGGGGAATCCCAACCTTGTTCATGCACAG AGCATCCTAGCAGTGCTAGCCTTCCAAGTTGTGCTCATGGGTCTTGTTGAAGGATTCCGGATCAACGGCCTTCCGGGAGT TGGAGAGGGCAACAACCTCTACCCTGGTGGACAGTACTTTGACCCTCTTGGCCTTGCTGATGACCCTGTCACTTTTGCTG AGCTTAAGGTTAAGGAGATCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGTTTCTTTGTCCAAGCCATTGTCACC GGGAAGGGACCACTGGAGAACCTATTGGATCACCTTGATGACCCTGTGGCTAACAATGCTTGGGTCTATGCTACCAAGTT TGTGCCTGGTTCTTGAAAATTATTTCCATAAGCTTGTTTTGTATGAATGGCATGACATGGAATTTTGTTTGTAGAATATT ATCATAATATGTGTCAGTTTAGTGTACTTTTTTTTCTGGTTCACTTTAATCCGTTTAAACTATCAAATGAGTTGGCCTAG CAACATTAAATCAAGAACTTAATGTCAAACGTTAAACTATCAAACGTGAAATGTACTTTTGAGTGGCTATTGTATGTAGT TTCAAAAACTTAATGTCACTTAATCGGGTCCTTTAGCAAGGCTTCCCATTTGCCAATTCCACGTTTACTTCTTTCTTGTT ATCTTGCTTCTTCAATT
CDS sequence (LotjaGi3g1v0324800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTGGCAGCAACACTGATGGCAGCCACAGCAAGCACCAGCACTGTTCTTAAACCAACCCCTTTCCTTGGTCAAAG TAGGGGAACCAACACCAACCCTCTTAGAGATGTTGTCTCCATGGGACCTGGGAAATACACCATGGGAAATGAATTGTGGT ATGGACCAGACAGAGTGAAATACTTAGGACCCTTTTCAGCTCAGACCCCTTCATACTTGACTGGAGAATTCCCAGGGGAC TATGGATGGGACACTGCTGGATTGTCTGCTGATCCTGAAGCATTTGCCAGGAACAGGGCTCTTGAGGTGATTCATGGACG TTGGGCCATGCTTGGAGCACTAGGCTGCATCACCCCTGAAGTACTTGAAAAGTGGGTTAGAGTGGACTTCAAAGAGCCAG TTTGGTTCAAAGCTGGAGCTCAGATATTCTCAGAAGGTGGCCTTGACTACTTGGGGAATCCCAACCTTGTTCATGCACAG AGCATCCTAGCAGTGCTAGCCTTCCAAGTTGTGCTCATGGGTCTTGTTGAAGGATTCCGGATCAACGGCCTTCCGGGAGT TGGAGAGGGCAACAACCTCTACCCTGGTGGACAGTACTTTGACCCTCTTGGCCTTGCTGATGACCCTGTCACTTTTGCTG AGCTTAAGGTTAAGGAGATCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGTTTCTTTGTCCAAGCCATTGTCACC GGGAAGGGACCACTGGAGAACCTATTGGATCACCTTGATGACCCTGTGGCTAACAATGCTTGGGTCTATGCTACCAAGTT TGTGCCTGGTTCTTGA
Protein sequence (LotjaGi3g1v0324800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALAATLMAATASTSTVLKPTPFLGQSRGTNTNPLRDVVSMGPGKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGD YGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQ SILAVLAFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT GKGPLENLLDHLDDPVANNAWVYATKFVPGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
Phobius | 1 | 14 | 14 | - | – | |
Phobius | 1 | 1 | 1 | - | – | |
Phobius | 2 | 9 | 8 | - | – | |
Phobius | 10 | 14 | 5 | - | – | |
Phobius | 15 | 271 | 257 | - | – | |
PANTHER | 39 | 271 | 233 | 6.8E-127 | – | |
PANTHER | 39 | 271 | 233 | 6.8E-127 | ||
SUPERFAMILY | 52 | 268 | 217 | 3.79E-76 | – | |
Gene3D | 60 | 264 | 205 | 4.0E-88 | ||
Pfam | 70 | 237 | 168 | 6.5E-51 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Photosynthesis, light harvesting | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. | ||
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0324800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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