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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0331700 |
| Transcript ID | LotjaGi3g1v0331700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High mobility group family; TAIR: AT3G13350.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10; TrEMBL-Plants: tr|A0A1J7IK62|A0A1J7IK62_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0331700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70067235..70075574) extracted from Lotus japonicus Gifu genome v1.2.
GAGTATTAGTATAATCTATGTAATTTTTTTTGGAGGTGTGAAAGCATAACATAGCATAGATTAAGATTTAGGAATAGAAA ATCAAGAAATTAACATGACAACAACAAGTGACTCAGGAACGCAGCAACAACATCGTCATCAGCTTCAGAATGTTGGAAAC GGAAATGCCTCTGCCTCACTCACACCCACCAACCCTTACCTTCCGCCAACCGCTCTCTACCAGAACCTCACTCGTGATGC CAATCTCTTTTGGGAGAAGCTTCGATCTTTTCACAAATCATTCGACACCAAATTCAAGTAAGTGGGTATGTTTTTCTTGA TTCAACAAGTTCCCTTTTTCGTTTTTGTGTTGATTCTTGTTTTTACGGTTGTGAGTTTTGTTAATTTCAATTGTTTGAGA TTAAAGTTGTGTGATTTTTGGGTTTTCTCTCGTGCCCAGTTATCATTTTAGCTGCAACTAGAGAGGGAAATCGATTGTGA TTATGAAATGTAAAGATTTTCTCTTTATTGTATATTTATTTGTGCGAAGCTAATGTAGGGGTGACCATCCTTACTTATTA TGAATACGCAAAGATGCTAATTATGATGGGATCTGATAAAAAGTCGATCCCATAAATATGAGCGAACGGACCACCCCATC AGGCACCAACTTCTGAATCGACAGAGTCCATGTAGACCTAAAGAAGAGGAAGACTAGACCTGAACAAGAGGAGGACTGGA CCTGAAGAGGAAGAAGACCTCAAGAAATGAATGATGATTAAAATAGTCCTTATGGTATCCTTTAGGGGGCATTGGACTTG TATTTTTTTGAGTATTAAGTTTAGGGTTCAGATTTAGGAGAGTAAAGAACTTCCCCGTGACAGGGATGCGTAGCAATGAA GCTACGTTGTCCAGTGTGATGTTCATCCCCCCGAACGACATATGAAAAGAGGAAGTCTTCGAGTGCCATATCTCTAGAAA CGCCGATAACATGGCCTTATCCACCGAGGGCAGGTTGCACGTCATCAAACTCTGTAGACCAGCCGCCTTAGCCCTTCCCT TTACGTACTTAATGAGGTACTTTGGTTCTTTCCCCTCCCCGTTCAAAGCATTCCCATGATGGTAAGTCTTCAAGACACCC AGATTTGTCTCATTTGGATATTTGTAAGACTTCCAAACTTGATATGCTACATGTCTCTTGAAGATCTTCAACAAAGTCAG CTTAAAAGCCCCCCTGGAAAGTATAGTTCCTCCTCATCCTCCACTTGCACATCCTCATCCTCATCCTGCCCACCCTCATT ATCATCTTCCTCCTCCTCATCACCAGAACCTTCCTCCTCATGCTCCTCATCAACTCTGGCATCACGCATATCATCATTCT CATGAGGCTGATTTACAATGGGAGGGACATCTTCAGGTTCAGGCTCTGGGGTTGCACGAGATGCACGACAGCACGAGCTT CTTCACGCCTTTTATGGTCAGACATAGTGGGATGACATCTGCTCACAAGGACTTGAAGTGGCTGGTTAGAATTATTAGTT CTTGCCATATCTGTACCAATAATGAAATGATTTACATAAGAGTGAGTAAACAAAAATGGAATTGCTCAGTGGACGCACTT TACAGTGCGATACGCACTTCAAAGTGCGTCTGAATCGCACTGTAAAGTGCCTATGTATCACAATTTTAAAGTGTGTGCGT ATGAATCACACTTTAAAAGTGTATGCCTAACACACTTTTAAAGTGCGAATCGTTACAGAGATCGGGTCCCCGAAAACTAA CCAGATCGCGACGGGGAAAAAGGTGGCGACGGTGGCTGGGGCGGCACGCGAGAGACTTGGCGATGGTAGCAGCGGCGGGC GACGAAGATCCCGAAGGCGGGTGGCGGTTGGAGCTGGTAGTGCCGTTAAAGATGAAGAGGAAGATGAAGATGGTGATTTG GAAAGGAAAGGAAGATGAAGTTGGTGAAAAGAAAGTTGTAAATGAAAATGGGATATGGGGTGGTGGGAGGTTTAGAGGGA AAATTTGAAATGGAAGAAAGTGGGGTGGTGGGAGGTTTGGAGAAGTTATTTAAAAATGGTATTTTAGACTTTTCTTAGCA TAAAGGGGGTAAGAATAGTTTGAAGGAGAGAGTTCTAATAAGAGTTCTAATAACAATTCCTGACACAATATGATTATTAT TGGTAACTCAATGTAAAATTGTTTTACACCGGTGGTTGTGCATCACAATTAAACTTAAAAAATATTTTATTTGAATAAAT TTATTTTAAAATTAGAAAGAATATAATTGAATTACCCATTTTGTAAACTTTATTGATAATCTTCATGCCAAATAAATATT TTATTAACCTATATCACTTTCTATTTTGATTACATGAAACAAACATATCACTTCATTCTGAATGTAGATGAGATGCGGTA TATCAATATTGTTTATAACCTAAGGTTTTAGTTTTAGTTTTAGTATAACCTATGTAATGTAATTTTTTGGAGGTGTGAAA GCATAGCATAGCATAGATTAAGATTTAGGAATAGAAAAGCAAGAAATTAACATGACAACAACAAGTGACTCAGGAACGCA GCAACAACAACAACAACAACATCAACATCATCAGCTTCAGAATGTTGGAAACGGAAATGCCAACCCTTACCCTCCGCCAA CCGCTCTCTACCAGGACCTCACTCGTGATGCCAATCTCTTCTGGGAGAACCTTCAATCTTTTCACAAATCATTCGGCACC AAATTTAAGTAAGTGGGTCTGTTTTTCTTGATTCAACAAGTGCCCTTTTCGTTTTTGTTGCTAATTCTTGTTTTTGCGGT TGTGGGTTTTGTTAATTTCCATTGTTTGAGATTAAAGTTGTGTGCTTTTTGGGTTTTCCCTCGTGCCCAGTTATCATTTA GCTGCAGCTAGGGAGAGAAATTGATGTATATTTATTAATGCTAAGCTTTCTTTGTGGTAATTTAATGAGGGGAATGAAAT GGAAGATGGATTTGCCTTGTATGGAGTGTCACTTTTACTGTGCTCTTAAAACTTCGCTTGAGTGAAGCAGTACTGAAGGA CTAGGGTGCCATTTTAAATGAAGGCCATTGAGAATTTTATGGTTGATTTTGTTTTACTTTTAAGATCAGTTAGTTTTATT GAGTTTGATTCTTCCTTATTGATTTTATGGTGTACCTATTCTTTTCTCTTACCTATTTGATTTTAGGTGTTTATGGGGCG GGGTGTGTGTTTTATGAGGGTCATATTATTTAGCGGAGTGGAGCGGAGGTAAAAATTCCTTTTGAGGCTTTATCAATGTT GGTGGTGTGGACGATTAGATAGGTTGAGGTACGGCAGATGGGAGATTTTGGGGGTTTTACTCCTTGTATTGGAGTGATGT GCTTATGGTTATATAAATACCCTATGTAAATCTGCACTTGGTTATAACAAGAAATATAGCCGCTCCCAATGATGTAGGCG TTAATTGGCTAAAACTCGTAAATCCTTGTTTTCTTTATTTTTGCTTTTAATTCTTTTCGCATTTACAACAGTATACAGAG TAGATGATTAAGAAAATTTAGAGTTAAAATTGTCTACTTTTCCCTTTTTGTTTGTGTAGGGTTCCTACTATAGGAGGAAA GCCGCTAGATCTATATCGCCTTTTTATAGAAGTAACATCTCGTGGTGGTCTTGAAAAGGTATGCATTGTGTATTTCTCTG CTACTACAGCAACAACCAATCCCTTTTCTCACTAGGTGGGATATGTTACATAGATCAAATGACACCATAATTGGTTGTAT ATCTCTACTAATTTTTGAAAATCAGTCACCTTGTGTGATGAAACATATATGTTTTCTTTTCTTTTTCCTTTTTTCATCTC TTTCATGATATGTATTCATTTAACTTGAGTTAGGAGCTAAGGTAATGGAAGTATGTCCTTTCAGCAGATTTGATGCTGAT TGTAGAGATTGAGTTTGAAATCTAGCTATGATGAAGTTCGGTGATGTTGAAATTTTTGTAGATTGATTTCTCTCTTTAAA AAAACTTTTCTAAATGACTTATCCTAAGTTTGCTCTTAAATTAACATAGGTACTTGACGATCGTAAATGGAAGGAAGTGA TTCTGGCTTTTAAGTTCCGAGATACCATAACCAGCGCATCATTTATGGTGCGCAGGTACTATTTATCGTTGCTTTATCAC TTTGAGCAAGTATATTATTTTCGGAAGCAAGTCCCTCCTTCCTCAACACCTGGTAAGAAAAGATGAATATTCCCCCCCGG CCCCCTTTTCCCACCCGCAATTATGTTGTGCTTTTTTAATCTTTGACCAATCAGTAATTCCATTTATCCAGACCCTGGCA ATAGGAGCCTTGCCAATAGCTCCACACCCATTAGGGAAGGTGCTGCTGTGAATGATATACCTGTTCAGGGTAAGTCAATG GAGCATTTAGATTTGATTATTCCTTTAAGGCTTCACATATTCATTTGTATCTATATTTGTTTTCACATAAAAGCAGTATC TTTAGTTTCTTATAATTATAGCAGAGGTCGAAGAGACTTCCAAATGATTCTTCATTTTTTCTTTAATTGTCTTGATGTGT TTCTGTTATGCAAATGACCCTTAATTATTGGCCCTTTACCAAATAACCCTCTATGGCTTCAGTTTTGGCTTTTAACCTGC TCACTTTCTCCATGTGGCAAATGGTCCCTTCCATTCCAAATGCCCCAAATTTGGAAAAACCGAATCACAAAGTTTATTGA GTCTCATTTAGAAGTTATATTATGGCCTAACCTAATGCTACATATTTAGGCTAATATTCTACTACTAGACTACTAGTACA AGCATAGTAGTCAAAATCACGATTAAATAGTTGCATTCTGGGTTAATCGCTGATTTTGCGATTACGAGCAGCACATCAAA TGGGCCCAGACCTGTTTTAAAATCACGACCTATTTGGTCTAAAACCCTATTTTTGTGTGTGGCCGAGCCTCATTCTTCAC TCCCTTCACGTTTACAACCTCTGCTCCTCATCCAGCAGCGGCTGCCTCTGCTGCACCAGCTAAGACTCTTACTGCACCGA TGCCGAAGTTCTTTATCCGGCGACATAATCATAGTAAATATGTGCTTTTGTTTTTTGGAATACCCTTCATAGACAATTTG TTTCTTGAGTTTTCACTTGACATTACTTTTTAGCTTGTGTCCTTCTAATCTATGTGGGTAACTGGATATGCTTTTCATGT ATATCTTTGATAAGGATTTGCTTTCTAATATGCAGTTAGTCCAGCACAGACACCTGGTTCTGTGGTGCCTGGAACAATTG ATGGGAACCTAAATGCAGTTAGTCCAGTACCAACACCTGGTTCTGTGGTGCCTGGAACAATTGATGGGAAATTTGATGGT GGGTATATAGTTACAGTGAGCCTGGGTTCTGAACAGGTGAAAGGTATCCTGTATCATGTTCCTGACAATGTGTCTCAGAG TTCTTATGCTGAAGGCATGCCTAGTTCGCGAAAGAAATCAAAATCGGCATTACGTGATCCATCTCTACCAAAGTCGAACA GGAGTGGTTACAATTTCTTCTTTGCTGAGAATTATGCCAGGCTAAGGCCCTCATTTCAAGGGCAAGAGAAAGAAATTAGT AAGAGGATTGGGTTTCTGTGGAGCAATCTGTCTGAAGCAGAAAGACAGGTATAAGATATGCACTTTTTACCGTTGCTCAG GGTTGTTGTTTTATTTTCTTTCTGGCATACCGTATGAAAATCTTCAGGTAAAAATAATGAAAGTTTATCTGTATGTGGAC TATTTTTATCTAGGCACATGGATCATTTTCCTTCGTTTCTCTTCGTTATCTCATAGAAAACAGACAAACATTACATTAAA ACCCAATTTAAGGTTCATAAAATGAATGATATGCCTGATACTGTTCAACTTTGTAGTCAAATGTAGCTATTGTGGATATG GTAGATCATCTAGACATGTGTTAGATCTCTAAAAAGCTTTGGTTCTCTGATCTGCAAACTCAGCTAGATGCCCAGCAATC TATTATTTGAACACAAACAAAACTAAATTTGACCAATCCTCAGATTCTCATTCATTGTAAATATTCATGGAAATACTTGA ACTATTTATACAAATTTTGTGGGAGTGTGTAAATGAGAAACAACATCGTAATATCTTCAGAAGATTAGAAAGTAATCAGG GCCTTTTTTAGTTGTAGCTATCATGGTGTCCTTTAGGCATTTGAGAATCTCCCACAAGCTTTATTCAAAGCCAACTCTAT TCCCTATTGGCTTCTAAAGGAGGTTCTGTGGTTGAAATAGTCAATGTCAAACAACAACAACAAAGCTTTGTTACTAAGTG AGGTCAACTATATGGATCACATTGCATCATTGAGCTCAATAAAAAACTAGATTATGAGGGATACTATTGATAATGAGATC ATTTTTAACAATATCTTCCCAAGTTCCTTTTGGCCTCCCTCTACCTCTTTTCACAGGACTAAATACCATGTCACCAACCC TTCTCACCAGTATTTCCAAATGTCTTCTTTGTACCTGTCCATACTCCATACCACCTTATTTATTCCGTATTAGTCCTCAG TCCTCACACTAGAGACACTACCCCTATATCTCCTCTTATCCGCCCATTGTGTATCTTATCATTTCTAGAGGGGCCAATCA TCCATCTTAACATTCTTATTTTTGCTACTGTCAATGTCCACTGCCAAAAAATAAATGGAGGCTGTGTGGTAATGATAACT GCTTCTAATGGCTTCTCAATTCTGTGTGAAATTATTAAGAAGGCTATAATTGTGGGGAGGACTATATTTGTTGTGATATT GGCTTTCACTTTTGCTTGATTATAATTTTTTTTTAGAGAAATAGTTGTACGTTAACTATAGAATCAAAATACCCTTGCTG GCCAGAAACAGATGACATGAAAGTTACTATCCTTATTTGTTTGAAATTATTTTGTGGTTTTATTTATCTCCAATACTTTT TTATACAATTTTTTTGTTGATTTAATGCAGGTTTATCAGGATAAAGCACTGAGAGATAAGGAAAGATACCAGACTGGAAT GCAAGAGTACAAATCCAATCATCCAGCTCCTCAGTAGACTTAACATGAGATTCTTAGACTGATATTTTATATGACTTCAC TTTTTGTCTTTTGCCCTTACCCTTGTTATGTTTAATTTTCCTCGTCATTCTAGAGAGATTTTACCCATGAGAAAACTGAT GGCTGAGAAGGGAGGGTTTGTGTCTTTGTGAGAATTCTGGTGTAGATTATGATGAATGATTTTGAAAAACATTTTGTTGT TAACTTTATAGTCGTTGCTCTCAAAATCAGGGGTCCGTCCTACGTTCAATTTTTATAGACCTTAGCCATGTGGTAGTCAT AGAAGTGGTAAGTTATGCATTATAGTTCTGGTTTCCAAAGCTGTATCTCCACGGCCGCAGCCATGAGTCTAATCTTCTCG GAGATCACATTAAGTGGGTATGTGTTTCTCTCAATAGATTTTTCTTTAAGCGCATCGTCCATGAATTGAACCCTAGACTA AATGCTTAAAGAACTCAGTTATTTATCAATTGTGTTGGTCCTTGTTGGTAGGTATGCATTATAGTTGATTATAAGTTTCA CCCGTATCATCATTACTTCACCTCCACCTCCGTTTGGGGGGGGGGGGAATTTGGAATGAGGAGTAGAGTTAGTAGATAAT TAATTAATTATGGAAGTGTAATATTGTGAAGATTATTTGAGGATTACTAGGTCTTATTACATCCATCCCTGGGAGAAGGG CCTGTGTATGTTCAGTACTGAGGCTAACGTTATAAAATTTGGATTGCTTATTGACTTAGTTTGTGATTTGTGTGTTTGGA TCGGTGTTAGTATGGTGTTAGTATAATTGGTGTTAGTATAATTGATTCGGAGACATGATTGATGATACTAAAATTGCATC CGGTAAACGAAAATTAAAAAGATGTCATTTATGTGTTGATATCTTTATGAAAAAAATTGTTTTTTAGAATAACTAGCGCT ATGGTACAACAAAAAGTAGATATAACATATTAACAAAAAAAGGCTAGACCCTCCAAAATACTCAGGTCTTCTTCATATGA GATTGAACTGCTGGTGTTCAAAGGAGTAATATTCTATTGACATCCCATTTCCACTTTCACCTTAGGTAAATAAGAAGAGA AATGAGAGAAATGAGTGATATGATTTGTGATGTGATAGGAAATGTTTAGAGAAATAGAAAAAAAAAAGTGTGAAATGAGA TGGGAAAGAAAGTGAAGTGTAAACCGTCATCTGGACCATCAGCGGCGGGATTCACTTCTGGAACATCCATCTGGGTACTG TTGCCTGAAACCACCTCTAG
CDS sequence (LotjaGi3g1v0331700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGAAACGGAAATGCCTCTGCCTCACTCACACCCACCAACCCTTACCTTCCGCCAACCGCTCTCTACCAGAACCTC ACTCGTGATGCCAATCTCTTTTGGGAGAAGCTTCGATCTTTTCACAAATCATTCGACACCAAATTCAAGAACGCAGCAAC AACAACAACAACAACATCAACATCATCAGCTTCAGAATGTTGGAAACGGAAATGCCAACCCTTACCCTCCGCCAACCGCT CTCTACCAGGACCTCACTCGTGATGCCAATCTCTTCTGGGAGAACCTTCAATCTTTTCACAAATCATTCGGCACCAAATT TAAGGTTCCTACTATAGGAGGAAAGCCGCTAGATCTATATCGCCTTTTTATAGAAGTAACATCTCGTGGTGGTCTTGAAA AGGTACTTGACGATCGTAAATGGAAGGAAGTGATTCTGGCTTTTAAGTTCCGAGATACCATAACCAGCGCATCATTTATG GTGCGCAGGTACTATTTATCGTTGCTTTATCACTTTGAGCAAGTATATTATTTTCGGAAGCAAGTCCCTCCTTCCTCAAC ACCTGACCCTGGCAATAGGAGCCTTGCCAATAGCTCCACACCCATTAGGGAAGGTGCTGCTGTGAATGATATACCTGTTC AGGTTAGTCCAGCACAGACACCTGGTTCTGTGGTGCCTGGAACAATTGATGGGAACCTAAATGCAGTTAGTCCAGTACCA ACACCTGGTTCTGTGGTGCCTGGAACAATTGATGGGAAATTTGATGGTGGGTATATAGTTACAGTGAGCCTGGGTTCTGA ACAGGTGAAAGGTATCCTGTATCATGTTCCTGACAATGTGTCTCAGAGTTCTTATGCTGAAGGCATGCCTAGTTCGCGAA AGAAATCAAAATCGGCATTACGTGATCCATCTCTACCAAAGTCGAACAGGAGTGGTTACAATTTCTTCTTTGCTGAGAAT TATGCCAGGCTAAGGCCCTCATTTCAAGGGCAAGAGAAAGAAATTAGTAAGAGGATTGGGTTTCTGTGGAGCAATCTGTC TGAAGCAGAAAGACAGGTTTATCAGGATAAAGCACTGAGAGATAAGGAAAGATACCAGACTGGAATGCAAGAGTACAAAT CCAATCATCCAGCTCCTCAGTAG
Protein sequence (LotjaGi3g1v0331700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLETEMPLPHSHPPTLTFRQPLSTRTSLVMPISFGRSFDLFTNHSTPNSRTQQQQQQQHQHHQLQNVGNGNANPYPPPTA LYQDLTRDANLFWENLQSFHKSFGTKFKVPTIGGKPLDLYRLFIEVTSRGGLEKVLDDRKWKEVILAFKFRDTITSASFM VRRYYLSLLYHFEQVYYFRKQVPPSSTPDPGNRSLANSSTPIREGAAVNDIPVQVSPAQTPGSVVPGTIDGNLNAVSPVP TPGSVVPGTIDGKFDGGYIVTVSLGSEQVKGILYHVPDNVSQSSYAEGMPSSRKKSKSALRDPSLPKSNRSGYNFFFAEN YARLRPSFQGQEKEISKRIGFLWSNLSEAERQVYQDKALRDKERYQTGMQEYKSNHPAPQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 41 | 79 | 39 | - | – | |
| MobiDBLite | 41 | 73 | 33 | - | – | |
| PANTHER | 46 | 375 | 330 | 1.3E-113 | – | |
| Gene3D | 79 | 193 | 115 | 7.9E-27 | ||
| SMART | 83 | 173 | 91 | 2.2E-31 | – | |
| SUPERFAMILY | 84 | 187 | 104 | 1.96E-30 | ||
| ProSiteProfiles | 86 | 177 | 92 | 26.917 | ||
| SMART | 87 | 178 | 92 | 4.7E-31 | ||
| CDD | 88 | 173 | 86 | 4.14608E-44 | – | |
| Pfam | 91 | 173 | 83 | 2.1E-18 | ||
| MobiDBLite | 282 | 306 | 25 | - | – | |
| Gene3D | 289 | 379 | 91 | 9.8E-19 | ||
| SUPERFAMILY | 292 | 377 | 86 | 5.11E-19 | ||
| SMART | 305 | 374 | 70 | 1.6E-12 | ||
| CDD | 306 | 370 | 65 | 1.0588E-17 | – | |
| Pfam | 306 | 373 | 68 | 3.8E-11 | ||
| ProSiteProfiles | 306 | 373 | 68 | 13.695 | ||
| MobiDBLite | 357 | 380 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0331700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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