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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0333500 |
| Transcript ID | LotjaGi3g1v0333500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 11S seed storage globulin; TAIR: AT1G03890.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|P05190|LEGB4_VICFA Legumin type B; TrEMBL-Plants: tr|B9SF37|B9SF37_RICCO Legumin A, putative; Found in the gene: LotjaGi3g1v0333500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70276093..70278331) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAGATTCTAGGCATCCATCATTCACACAAAAATATTTGCAATGGCAAAGCTTTTTCTTCTATGTTCTCTTTCCCTTT GCTCTCTACTCTTCATGAGGGCTTGCTACTGCTTAGCTATGCCTTACAGTCACATACCGTGCCAGCTCGACAACCTCACC ACATTGGAACCTAATCACCACATTGTGTCCGAAGGTGGTGTGATTGAGACATGGAACACCACCCACCCCGAGCTACATTG TCTTGGTGTAGGTGCTGTCGTCAAGCGCACTATCAACCCCGCAAGCCTTCTCTTGCCATACTACACTAATTATCTTGAAT TCCATTACATCATCCAAGGTCATCTATCACACATATTTACGAGTAATTGTACATAGTTATACAATTTGCGGTGACACAGA CATACATAACTTCCTCAAAGGTGTATGTATGTCCAAAGGATGATCACCACAAATTATATGTCTTAATCATTTTTAATTGG AATGTCCATTCTAATATATATACATGTGTATTTCAGGTGAGGGAGTAGCCGGGAGTGTAGTTCCTGGTTGCGCAAATCGC ATGATCATTCACTTCCGACGTGGTGATGTCATCGCAAGCTACCCTGGAGTACCTTTTTGGGCTTACAACAAAGGCAAGCA ACAAGTTGTTGCCATCAGTGTTGGCTTCATCAACTCCGCAAATCAGCTTGGTGTTATCCCTAAAGTAAGCTAATTAACTC AATCACTAATTTAATTTCAGGCTAAATATGTTTTTTGTCACTACAAAATAATGAGTTATTGATTTTGATTCCTTTAAAAT AATCCACAATTTTTGAAAATACATATGTTTGACTCTCTAGGACGGACTAAATCAGATTTTAAGGACTACAAAAATGATTT CAAGAACTGAAATCACTAAAAAAGTGGTCCTTTAGAATTACTTTTTCTTTAAATATCGTTTATTTTAGGGATACAAATTA AATATGTGTATTTCCAGAAATTGGGAATATATTTCAAAGTATTTTTTAGAGATCAAAATTAATAATTCTTTAGTTTTAGG GGCTAAAATAATACTTAACCATTTAATTTACATTCAAGTACTCATCAACATGGTCATAATTAAGAGTTTTCAATTAATGG ATTGTAGAGATTCTATCTTGCTGGGAATAATACAGAAGAGAATTTCAACCTGGATCACAACGTGTTCAGCGGCTTGGACA CAGGGTTATTAGAAGAAGTGCTAAACGTAAATGAAGACATTGTAAAAAAGATACAATCTGAAGATCCCAGGGGCCAAATC GTAAAAGTGCAAGGACAATTTACCAGCATTTCAAGTTCACACCAACCAATAACTACACAAGAAAGGAATAAGCAACAAAG TGGGTACCATGAAGCTTGCACCTTCAAGTTTCATGAGAACATTATTGATAACTCTTCATACACCCTCTATAATCCAAGAG CTGGTCGCTTATCTACTGTTGACAACTTCAACCTCCCGATCCTCCAACTATTAAAGTTGAGCGCCCGACATCTTGTCCTT TATAAGGTAACTTATAGAACAAGAAAAAAATAGTTCACAAGTTAAAAGAGTTTCCTTGAAAATTAAGAACATAGCATACA AAATATTTGTTAACATGAAATGTTTTATATGCACAGAATGGAATAGCTTCTCCGAGCTGGGATATGAACGGACATAGAGT GATGTACGTGATTAGAGGCCATGCAAAGGTTCAAGTGGTGAACTCCGAAGGCAACTCAGTATTTGAAGGTGAAGTCACAA AAGGACAAGTTTTGGTGATCCCTCAGTGCTTTGTGGCGACAAAACAAGCAGGAAGTGAGGGATTTGAGGCCATAGAGTTC GTCACGAATGAAAACTCCATGTTTGTGTCCCTCGTTGGGATGCATTCATTGCTGAGATCCATTCCTGTAGATGTTCTTGC CAATGCATACAGGCTTAACCCAAATGAAGTGAGCGCACTCATGTTCAACCAAACCGAGGGACCTCTAGTTAACTATTAGC CCCTTCAGATCCTATTAGGCTCATTATGGGAAGGGTACTAGAATAATGAAAATTGTAATGTTGTATGGCTCTAGCTAAAT GTTACTTGCTTATGCTCAAGTAACATTGATCATTTAAATAAAACGTGACTTCAAAGAATTTTAATAAAGTGATATTGTAT GGCACTAGCTAAATGCATGTTACTTGCTAGGTGTGTTTTTCTCTTTGATTATAACAAATTAAAGTAAGAAACTTCAAGC
CDS sequence (LotjaGi3g1v0333500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAGCTTTTTCTTCTATGTTCTCTTTCCCTTTGCTCTCTACTCTTCATGAGGGCTTGCTACTGCTTAGCTATGCC TTACAGTCACATACCGTGCCAGCTCGACAACCTCACCACATTGGAACCTAATCACCACATTGTGTCCGAAGGTGGTGTGA TTGAGACATGGAACACCACCCACCCCGAGCTACATTGTCTTGGTGTAGGTGCTGTCGTCAAGCGCACTATCAACCCCGCA AGCCTTCTCTTGCCATACTACACTAATTATCTTGAATTCCATTACATCATCCAAGGTGAGGGAGTAGCCGGGAGTGTAGT TCCTGGTTGCGCAAATCGCATGATCATTCACTTCCGACGTGGTGATGTCATCGCAAGCTACCCTGGAGTACCTTTTTGGG CTTACAACAAAGGCAAGCAACAAGTTGTTGCCATCAGTGTTGGCTTCATCAACTCCGCAAATCAGCTTGGTGTTATCCCT AAAAGATTCTATCTTGCTGGGAATAATACAGAAGAGAATTTCAACCTGGATCACAACGTGTTCAGCGGCTTGGACACAGG GTTATTAGAAGAAGTGCTAAACGTAAATGAAGACATTGTAAAAAAGATACAATCTGAAGATCCCAGGGGCCAAATCGTAA AAGTGCAAGGACAATTTACCAGCATTTCAAGTTCACACCAACCAATAACTACACAAGAAAGGAATAAGCAACAAAGTGGG TACCATGAAGCTTGCACCTTCAAGTTTCATGAGAACATTATTGATAACTCTTCATACACCCTCTATAATCCAAGAGCTGG TCGCTTATCTACTGTTGACAACTTCAACCTCCCGATCCTCCAACTATTAAAGTTGAGCGCCCGACATCTTGTCCTTTATA AGAATGGAATAGCTTCTCCGAGCTGGGATATGAACGGACATAGAGTGATGTACGTGATTAGAGGCCATGCAAAGGTTCAA GTGGTGAACTCCGAAGGCAACTCAGTATTTGAAGGTGAAGTCACAAAAGGACAAGTTTTGGTGATCCCTCAGTGCTTTGT GGCGACAAAACAAGCAGGAAGTGAGGGATTTGAGGCCATAGAGTTCGTCACGAATGAAAACTCCATGTTTGTGTCCCTCG TTGGGATGCATTCATTGCTGAGATCCATTCCTGTAGATGTTCTTGCCAATGCATACAGGCTTAACCCAAATGAAGTGAGC GCACTCATGTTCAACCAAACCGAGGGACCTCTAGTTAACTATTAG
Protein sequence (LotjaGi3g1v0333500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKLFLLCSLSLCSLLFMRACYCLAMPYSHIPCQLDNLTTLEPNHHIVSEGGVIETWNTTHPELHCLGVGAVVKRTINPA SLLLPYYTNYLEFHYIIQGEGVAGSVVPGCANRMIIHFRRGDVIASYPGVPFWAYNKGKQQVVAISVGFINSANQLGVIP KRFYLAGNNTEENFNLDHNVFSGLDTGLLEEVLNVNEDIVKKIQSEDPRGQIVKVQGQFTSISSSHQPITTQERNKQQSG YHEACTFKFHENIIDNSSYTLYNPRAGRLSTVDNFNLPILQLLKLSARHLVLYKNGIASPSWDMNGHRVMYVIRGHAKVQ VVNSEGNSVFEGEVTKGQVLVIPQCFVATKQAGSEGFEAIEFVTNENSMFVSLVGMHSLLRSIPVDVLANAYRLNPNEVS ALMFNQTEGPLVNY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 4 | 17 | 14 | - | – | |
| PANTHER | 8 | 113 | 106 | 6.2E-124 | – | |
| PANTHER | 8 | 113 | 106 | 6.2E-124 | – | |
| SUPERFAMILY | 10 | 408 | 399 | 2.72E-63 | ||
| Phobius | 18 | 25 | 8 | - | – | |
| Phobius | 26 | 414 | 389 | - | – | |
| Gene3D | 29 | 253 | 225 | 9.6E-62 | ||
| SMART | 36 | 201 | 166 | 3.4E-16 | ||
| Pfam | 40 | 170 | 131 | 1.8E-23 | ||
| PANTHER | 115 | 413 | 299 | 6.2E-124 | – | |
| PANTHER | 115 | 413 | 299 | 6.2E-124 | – | |
| PRINTS | 250 | 267 | 18 | 6.0E-39 | ||
| SMART | 251 | 400 | 150 | 8.0E-39 | ||
| Gene3D | 256 | 414 | 159 | 1.2E-41 | ||
| Pfam | 261 | 399 | 139 | 2.2E-27 | ||
| PRINTS | 273 | 293 | 21 | 6.0E-39 | ||
| PRINTS | 319 | 335 | 17 | 6.0E-39 | ||
| PRINTS | 337 | 352 | 16 | 6.0E-39 | ||
| PRINTS | 355 | 373 | 19 | 6.0E-39 | ||
| PRINTS | 377 | 394 | 18 | 6.0E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi3g1v0333500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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