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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0335600 |
| Transcript ID | LotjaGi3g1v0335600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase; TAIR: AT1G72175.1 E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232); Swiss-Prot: sp|Q7SZN2|RN170_DANRE E3 ubiquitin-protein ligase RNF170; TrEMBL-Plants: tr|I3S319|I3S319_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0335600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70561052..70563786) extracted from Lotus japonicus Gifu genome v1.2.
GGAAGTCATTGTTATTCTTACTAATGACATAGACGTTCATAACTACCGACACAAGGATAAGACCGCCACAATTCAAGCCA TGTTAGACATGACTGGTTAGTTACTTTCTCTCATATTTCCCGTGAGCATAATCTAGTCGCAGATGTTTTGGCTTGTCAAA CTCACTAAATGTAAGTCATTGACAAGTATGGAAGTTTCATCCTTACCCTTTTTTATTAGAGCCCTAACTACTTTCATTAA AAAAGTAATAATTTTACCGACCTTGTTTATTTTTACTTAATGAGGAAGTGACAAGGGAATTGAAGGTTTATACTTTATAG TTTATACACAACACAACACAGTAACCAAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGGTTCATCCATGGAGC GGGAAGGTCCTCCATTGAACGATCTCTGCTCAGTGTGCCATGGAAACTTCCACATTCCATGCCAAGCAAATTGCTCTCAC TGGTTCTGCGCCAACTGCATCATGCTGGTGTGGAACCATGGATCTGCGATTCAACCATGCAAATGCCCCCTCTGTCGCCG CCCCATTACGCTCCTGGTTCCTACCGAACAAGACTCCGCGTCGCACCGCCAGGAACCTGAAGTCGCTCACGTTCTCTCCC AAATTCAAACCTACAATCGCTTCTTCGGTGCCCGTTCCTCTGGTCCCCTTCAAGTACGCATTTTGATTTTGACCCATTTT ATATTTCGTGCTCTTTTTGTTGTTTTTATATCAAAGTTTTGATCTTGTTGAACAGAGAATGCTGGATCTCCCTTTTCTGC TGCGAAGGCTTGCTCGGGAATTCTTGGACCCTCAGAGATCACTTCCTCTTGTCATCAGAGCTCGTGTTTATATTGCAGTA AATTTCTTACTATTCCAATCGAATATGCTTTTGTTTCATTTTTTTTATATGCATATGTTGTTGTTTAGTGTTCATTTGTT CTGGTTCTTTACTTTATAGCTGAATTGTTATTTATTCAATTCATTGTTTGGTTGGCCCTTTAGGTGGGTGAACTTTCAGT GTGCCCTTGGTTCTAGGATAGTTTAATTTATTGATTGGTTATTTGCTTTAATGATTTTGCTGCTACAACTAATTGGGGAT AAAATTATAGGGTCAATGTGGGTTTGGGATAAGATTAATAGCATGTTCCCATCAGCTTCTCTTTCTCAGAATCAATTTTG GCACCCAATAGCTAGTCACATAAGCTTTTCCCAGTTTTGATTGTCTTTAGAATCAATTGTAAAAGCATTTCCAAATGTGC ACTAATCATTTGGGTTCTATTTGTTGTTGTTTAGTGTTCATTTGTTCTGTTTCTTTACTTTATAGCTGTGTCGCTATTCA GTTCGTTGTTTGGCCCTCTAGGTGGGTGAACTTTCTGTGTGCCCTAGTTTCTAGGATGATTAGTTTATTGATTAGTTTAT TGGTTGGTTATTTGCTTTGATGAGGGCATATGTGCAATCTTTGCTCCACTGTTTGATTCTGTGGCACCAAAGCTGATTTG GGGTTGGGATAAGATTGAGCATTTGGCTTCTATTTGGTTTTTGGAAGGACAGCAAGAGAAAGGGGTGGGGTTCCTAACAG ATATGTTTAGGTATTGGGAAGTTTTTCTCCATAGCTGTTTTTTTTTCCTCTGTTATTTCTGTTTTCCTTTTACACCAAGG AAGATTTCTCACTGCCAAATTCTTTTTAGGGTGTGTTTGCGAGTTTTTAGGGGAGGGAAGGGGAAGGCTTTGAGGTCAAG GGGAGGGGAGGGCCAGTGAGGGGGAAGTGGGTGTCTGTGTGTTTCCTTGAGTTTGCAAGTACTAAAACTCCACTAAACCC TCCACTCTAGGGGAACTTCACGAGACAAGTAAAAGAGGGTTTTGGTGGGTTTTCAAAAATTCCCCAAACCCTTCCACCCT TTTTAAAATCTCCCAAACAAGGGGGGACTCTCATAAGCCTCCCCCTTCCCTTTCCTCCCCTCCAAAATTAAACTCACATA CACACCCTTTGTTTCTTCTCTTTATCTTAATAATTCATTATTTTATATTGATGCATAAAGAGAAGGGTCATATTATATAT TGGTGGTATATCCGTATATCTACAAGTTTGAATCCTGTCCTTACACTGTCTCTTTGATGCAGATGATAATAAGTGCTATA TACGTCTTTAGCCCCATTGACATCATTCCTGAAGGTATTGCTCATTATATTTTGCCATTTTGTTGGATTTGTGCTATTGA TCTAGTATGGTTTTGATCCCTATTGTTCATGGTTGAGTTTTTTTTATTCATCTTTTCTGCAGGGATATGGGGAGTAGTTG GTCTCCTGGATGATCTCCTTATTGTGCTCATCTTCTTCTTGCATGTTGCTGCCCTTTATAGATCAGTGCTTTACCGCCGT CATGGTGGTTCCTGAACTACCCTCTTTGCGATTGTACAGTTAAAAATGATGAAATGAGATGAGACCTTGGTGCCTGATGC GGGCCTTTTCTTTCATCTTGAAAATTGACATCCCCTGTTTTGTTTATGTACATAGACACAAGTTCACTCTCAAATATTTG TATTGATTTGAGTGAGAGAAATGACATCAGCTCACTCGTACCATATCTTCACTCATAGTTTGCTTCAATCTTGAAATGAG AGCATTTTTTCAACTTAAACTTTTTATTTTACAAAAGATTATATGATAGTTGTATCTAAAAAATTCATTTATTTTAAAAA TTATTGAAAAGCTCC
CDS sequence (LotjaGi3g1v0335600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCGGGAAGGTCCTCCATTGAACGATCTCTGCTCAGTGTGCCATGGAAACTTCCACATTCCATGCCAAGCAAATTG CTCTCACTGGTTCTGCGCCAACTGCATCATGCTGGTGTGGAACCATGGATCTGCGATTCAACCATGCAAATGCCCCCTCT GTCGCCGCCCCATTACGCTCCTGGTTCCTACCGAACAAGACTCCGCGTCGCACCGCCAGGAACCTGAAGTCGCTCACGTT CTCTCCCAAATTCAAACCTACAATCGCTTCTTCGGTGCCCGTTCCTCTGGTCCCCTTCAAAGAATGCTGGATCTCCCTTT TCTGCTGCGAAGGCTTGCTCGGGAATTCTTGGACCCTCAGAGATCACTTCCTCTTGTCATCAGAGCTCGTGTTTATATTG CAATGATAATAAGTGCTATATACGTCTTTAGCCCCATTGACATCATTCCTGAAGGGATATGGGGAGTAGTTGGTCTCCTG GATGATCTCCTTATTGTGCTCATCTTCTTCTTGCATGTTGCTGCCCTTTATAGATCAGTGCTTTACCGCCGTCATGGTGG TTCCTGA
Protein sequence (LotjaGi3g1v0335600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEREGPPLNDLCSVCHGNFHIPCQANCSHWFCANCIMLVWNHGSAIQPCKCPLCRRPITLLVPTEQDSASHRQEPEVAHV LSQIQTYNRFFGARSSGPLQRMLDLPFLLRRLAREFLDPQRSLPLVIRARVYIAMIISAIYVFSPIDIIPEGIWGVVGLL DDLLIVLIFFLHVAALYRSVLYRRHGGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 128 | 128 | - | – | |
| Gene3D | 3 | 92 | 90 | 1.1E-10 | ||
| PANTHER | 4 | 188 | 185 | 1.3E-86 | – | |
| PANTHER | 4 | 188 | 185 | 1.3E-86 | – | |
| SUPERFAMILY | 11 | 64 | 54 | 6.82E-12 | – | |
| ProSiteProfiles | 12 | 55 | 44 | 10.586 | ||
| SMART | 12 | 54 | 43 | 0.0082 | ||
| ProSitePatterns | 27 | 36 | 10 | - | ||
| Phobius | 129 | 146 | 18 | - | – | |
| TMHMM | 131 | 153 | 23 | - | – | |
| Pfam | 133 | 167 | 35 | 2.0E-7 | ||
| Phobius | 147 | 151 | 5 | - | – | |
| Phobius | 152 | 177 | 26 | - | – | |
| TMHMM | 163 | 182 | 20 | - | – | |
| Phobius | 178 | 188 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0335600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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