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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0336200 |
Transcript ID | LotjaGi3g1v0336200.10 |
Related isoforms 14 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70632831..70637882) extracted from Lotus japonicus Gifu genome v1.2.
TTAAATTTGGTTGTGTCTTGAATTTACCTATTGGCTATTGGTTGGTTCTTGTATGCGAATCTCTAATTCTGCTCCTGCTA TGCATATTATTCACCATAGTTTGGAATTTGGATGCTAGGTTAATTTGTATACTTTTTGATTAATTGATTGTGTTTTGGCA GCATGGATCTCGTGATTACGACAGAGAATCATCAAGAAGCAGAGAAAAGGAGCGAGACAAAGGAAGGGAAAAGGATAGAA AGAGGGAAAAAGGGAGGGACAGGGATCGGGAAAAAAGCAGGGACAGGGATAGGGATCATGAGAGAAGCAGGGACAGGGAC AGGGATAGTGAGAGGAGCAGGGATAGGGACAGAGATAGGGAGAGAAGCAAAGATAGGGAACGTGGTGATCGGGATGGGGA GAAGGAAAGGGACCACCATCATAGAGACAGACATAGGGATCGTAGTGAGAGAAGGGAAAGAGGGAGAGATAGAGATGATG ATGATTTTTACAGAAGCCGGGACAGCGATAGGTAAAAGTTTATTTGGACTTGGAGCTTGAGAAATTTAATCAGCTTCTAC TTTACTGTGAAGTTCTTATTGCATGCAATCCATTGTCTTATACTATAAGAATTCACAAATTTATATCCAAAACATTAGCA ATTATTTTCATTAGTTTTTCCATTCATATTCTTTTTTCAATTTTTATCTTAAATTGTTTTATGGTACAGACGAAGGGATT ATGATAGAGAGGATAGGCATAAGCGCAAGTCTCGTTCTCGATCTAGATCAAAGTCAGTGGGTCGTTCCGAGCATAGATCA AGGTCACGTTCACGCTCAAAAAGGTATGTCTTTGAAAGATCCTTAAGATTTAGTATGCAGATGTGCAGTTGTGCTATATG ATGCATGCATCTGGTGTTTGGGAAATTCTAAGTTCTGTTTTGTAAAATATAAAATAGTTAGATGTGCAAAGTGGAACTGG TATGGTGTTGTCAATGCTTGGAAGACAGCTATAACTAATGATTTTCATAGTTGGTTCTAAAGCCATTTTATGTCAGTTTT TATTTCTGTTACATCCTTAATAATTTTAGTTTGTTAGAATCACTCTCTAGTTCCTTATTGTTTCACCAAATTTTTAACCT TGATAAGACATGTTGACTTGACATTTTTTATCTGGCAATCATTCATAATCATACGTCCTTGTGTTAGTCTTCTCCTTCCG CATTATAACTTGCACAAGTCTTTTCTCTCAATTTCACCAAAGCCTGAAATTCATCCATGTCATGATAATAACAGTTAACG GAATTTTAACCCTGTTGGCCTTCAGGTCTTACAAATTTTAGAGCTATACTGACTTAACTAAAAGTTTCTGAACTATAGGA ACTTAATTAAACCTTTGATAAAATTAAAGGCAGAGGTGTAAAGTAACTTAACCTTTCAACTTAAGGGAACACAACATCAC CTGAAGTATAGCCAAATGATAAGGGCATCTATCCCTATTTCAATTTTTATCAGTCGCTGAAGGGCTCCTTGCTGTTTAAT GATTTATATATATTAATCTGTTCTAGATAATATCTGATACAACTAAATTTTACATTTAATATGGCTTGAAAATTTACTTG CATTTGTGGAAACTAATTTAATTTTATTGAGGTATATAAGTTTCTGTTGGTATAACTATAGTTAAGCTGTTTGTAATCGT AGTTAGAATTCTGTTTCCAGATTCTGTTCAGTTGTAAAGACTATATAAGAGTATCCACTTGTATTCTTTTCAATTTTATT TTATTGAGGTATATATAGTCCAGCATGTATTATACTTAGTGATTTAGTTCTTAGTTAGTTTACTATCTTACCTATAGTTA AGTTTCTGTTGTATAACTATAGTTAGGCTGTTTGTAATCGTAGTTAGAATTCTGTTTCCAGATTCTGTTCAGTTGTAAAG ACTATATAAGAGTATTCACTTGTATTCTTTTCAATTATTGTAACCATCTTCATTTAAAATATTTCTATCAACTATGTTCT CTCTGTTTCTAAACATATTTACTTACAGCAAAAGGACTAGTGGTTTTGATATGGCCCCCCCTGCTTCTGCAATGTTGGCT GGTGCTTCTGCTGTTACAGGTACATGTACATCTACTCATGTATATATTACAAACATTTTTAACCTTTTTTTTTTTTTGCT GCATTGGAAAAACAAACATTTTTAACCTTAACTGCTTTCTTTCTTTTTTTGGTCCTAGTATGGAAAATTATCAAATTGCA TGGTGTAACTTGGTAAGCCAAGTTCAGTCACTATCAGTATATAACTTTCACAACTGGTTTCCATGGTGTGTAGTTTTGTC TTTCTTTTTACTTAGTGATATAATTCTGGAACTAAAAGGTGTTTTGGTTTTTTTGTCTTGTTTTTGGTGTTTGTTTGTTT TGTTTCTATGTCTTGTCATATGTTCTAAGAAGGCAATGTCGGGCTACTAGCCCCACTGTGCTGACAATGGGCGTGAGCCG ACTTCTGTAGCTTTTATGTCCACGGAGGAATCAATGCACCTGTTTTTGGTGGGTCTTGTTCGTCTTCAACTGGAAACCGT TAGCTACTTTGGTAGACTTGCAAATATTATTTCTAAAGCTTCTTAATAAAGTGCTCTTTTAATCTTATTGATATACTATA TGCAATGAGGTTAAATTATGCTTCAGCTGATGCCAATTGTAGCAGGAGTCATTTGATACTCATATAATTGTATTGCAAAA GATTTGAATAATGAATTTATTCTGAGATGCTCATACCTTTATTTGCAGGTCAGATCCCCGGTGCAAATCCTGCAATTCCT GGAATGTTTCCAAATATGTTTCCATTGGCTACAAGTCAGGTACAAATCCTGCTATATGTTTCCAAATATTCTTAACTCGT TATGCAGGATGACTTTTTATTGAATTTCACCGTTTTCTCTTGTCTTTTTATAGATGCAGCCATTTAGTGCTCTTCCTGTC ATGCCAGTTCAGGCTATGACTCAACAGGTAAATGGATTTTTCTGGTGATGAGATTTTCTTCCTTTCTCTTTTAGCATTAT TTCCCATTATGGCCTTTGTTTGATGTTCTGAATGTACAGGCTACAAGGCATGCTAGGCGAGTGTATGTTGGGGGCCTTCC TCCTACAGCCAATGAGCAGGTAATATATAGTAGTTCAGAATGATCTTTCATGATTGGTTTCTCAATTAGAATAAGTAGAT TATCTGCTAAATTAGGTACTTGCCAAATAGTTTTTTGTGTTTATCAAGTGATCTAGCTTGCATTTTTTACTGCATGCTTC TGATACTTGTGAGTTCCTCGGGTTGAGGAAGCAATGCTGGTAGGACTTGACCACAGTGGAAAACAAGATGGATAATATAT ATTTTTTGGCTTGTTTTTTTTCCTGAAACTTTTGGGTTTTTTTTTGCTTCTAACTTTGATACATTGCAGTCAGTTGCAAC TTTCTTTAGTCAAGTTATGGCCAAGATTGGGGGAAACACTGCTGGTCCAGGTACATTATGATCTTAAATGAATTTTGCCA TTTTGGTGACTCTACGGGCTTTCCATTTGATTCAGTTTTATTTGTGCAGGTGATGCGGTGGTCAATGTTTACATTAACCA TGACAAAAAGTTCGCTTTTGTGGAGATGAGGTCTGTTGAAGAAGCTAGCAATGCTATGGCTTTAGATGGGATTATTTTTG AGGTATTTTTTTCTTTCCTAACTGAATCTTGGGTTTCTGTTTTGGTTTTGTAAATCATTTGTCATAATCCAATTTTCATT TTTAATTCAGGGGGCACCTGTTAAGGTCAGGAGACCTACTGATTACAATCCTTCTCTGGCTGCTACCCTAGGCCCAAGCC AACCTAACCCAAACCTTAATCTGGGTGCTGTTGGTTTAACACCTGGATCTGCCGGTGGACTTGATGGACCTGATCGAATT TTTGTGGGAGGACTTCCTTACTACTTCACTGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGGGGTTT TGATCTAGTGAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACGGACA TTGCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACACTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCT CAGCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCGCAGCAGCAGATTGCTCTACAGGTCTGATGGGTTTGTTA CTTATGTTTTGTGTTACAAATATCTTCATGCACATATTTAATTTTCTAATTGATGTACACTTCTGAATTCTGCAGAAACT TATGTTACAGCCAGCATTAGTGGCAACAAAGGTGGTGTGTTTAACTCATGCTGTTTCTGCTGATGAGCTCAAAGAAGATG AGGACTATGAAGAGATTCTTGATGATATGAGACAGGAGTGCTCCAAATTTGGTAATTTCTGATTTAGTTTGCTTGTCTTT CACTGCAAACTATAATACATTCATATTAATTTTTCTGTGTTATTTTTTATTTGTTTTACAGCCATTTGTAGTCCCACATT CTCCCATAAAGAATCAGGCCTAACTTACAGACTGAAGCCTCCATAACCTTCACTCTTTGTTCACACATACTTGTTTTCAT TGCATGCTTTTGAAAATTTGTGTGCATGTATGATATATCGGTGTATTTGTTCTAACACAATCTGCAGGTACTTTGGTGAA TGTGGTGATCCCTCGCCCACCACCCGATGGTGAACAGTTGCCTGGAGTTGGAAAGGTTTGTTCTTTTGACCTTATTCTGG AAGTTTTTTCCCCTTGTCCTCCAAGCATAATCTGCTTAAAAAGGTGTTTTGCTTTTGGGTAGCAATATTTCGTACATGCT ATGTATTGTTTAAAATACTTTTTTGTACTTGCAGGTGTTTTTGGAGTATGTTGATGTTGATGGTGCTACAAAAGCCCGTG CAGGACTGAATGGACGCAAATTTGGCGGGAATCAAGTAATAGCTGTCTTCTATTCGGAGAATAAATTTGCGCAGGGAGAT TATGAAGGCTAA
CDS sequence (LotjaGi3g1v0336200.10) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCCCCCCTGCTTCTGCAATGTTGGCTGGTGCTTCTGCTGTTACAGGTCAGATCCCCGGTGCAAATCCTGCAATTCC TGGAATGTTTCCAAATATGTTTCCATTGGCTACAAGTCAGATGCAGCCATTTAGTGCTCTTCCTGTCATGCCAGTTCAGG CTATGACTCAACAGGCTACAAGGCATGCTAGGCGAGTGTATGTTGGGGGCCTTCCTCCTACAGCCAATGAGCAGTCAGTT GCAACTTTCTTTAGTCAAGTTATGGCCAAGATTGGGGGAAACACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACAT TAACCATGACAAAAAGTTCGCTTTTGTGGAGATGAGGTCTGTTGAAGAAGCTAGCAATGCTATGGCTTTAGATGGGATTA TTTTTGAGGGGGCACCTGTTAAGGTCAGGAGACCTACTGATTACAATCCTTCTCTGGCTGCTACCCTAGGCCCAAGCCAA CCTAACCCAAACCTTAATCTGGGTGCTGTTGGTTTAACACCTGGATCTGCCGGTGGACTTGATGGACCTGATCGAATTTT TGTGGGAGGACTTCCTTACTACTTCACTGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTG ATCTAGTGAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACGGACATT GCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACACTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCTCA GCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCGCAGCAGCAGATTGCTCTACAGAAACTTATGTTACAGCCAG CATTAGTGGCAACAAAGGTGGTGTGTTTAACTCATGCTGTTTCTGCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAG ATTCTTGATGATATGAGACAGGAGTGCTCCAAATTTGGTACTTTGGTGAATGTGGTGATCCCTCGCCCACCACCCGATGG TGAACAGTTGCCTGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTTGATGGTGCTACAAAAGCCCGTGCAGGACTGA ATGGACGCAAATTTGGCGGGAATCAAGTAATAGCTGTCTTCTATTCGGAGAATAAATTTGCGCAGGGAGATTATGAAGGC TAA
Protein sequence (LotjaGi3g1v0336200.10) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPPASAMLAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSV ATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQ PNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDI ACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKEDEDYEE ILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKFAQGDYEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 24 | 24 | - | – | |
PANTHER | 1 | 399 | 399 | 4.9E-232 | – | |
PANTHER | 1 | 399 | 399 | 4.9E-232 | – | |
Phobius | 1 | 4 | 4 | - | – | |
Phobius | 5 | 16 | 12 | - | – | |
TIGRFAM | 6 | 398 | 393 | 9.1E-158 | ||
Phobius | 17 | 24 | 8 | - | – | |
Phobius | 25 | 400 | 376 | - | – | |
SUPERFAMILY | 47 | 150 | 104 | 4.43E-17 | ||
Gene3D | 59 | 156 | 98 | 1.0E-29 | ||
CDD | 63 | 145 | 83 | 1.80517E-41 | – | |
ProSiteProfiles | 64 | 147 | 84 | 13.004 | ||
SMART | 65 | 143 | 79 | 7.3E-14 | ||
Gene3D | 157 | 275 | 119 | 1.8E-21 | ||
SUPERFAMILY | 181 | 269 | 89 | 2.69E-23 | ||
CDD | 184 | 260 | 77 | 3.17353E-44 | – | |
ProSiteProfiles | 184 | 262 | 79 | 15.494 | ||
SMART | 185 | 258 | 74 | 7.8E-21 | ||
Pfam | 186 | 255 | 70 | 2.6E-17 | ||
Gene3D | 294 | 399 | 106 | 9.1E-30 | ||
SUPERFAMILY | 295 | 392 | 98 | 5.91E-18 | ||
CDD | 298 | 386 | 89 | 2.50088E-42 | – | |
ProSiteProfiles | 305 | 391 | 87 | 9.047 | ||
SMART | 306 | 387 | 82 | 0.052 | ||
Pfam | 323 | 383 | 61 | 8.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
Expression pattern of LotjaGi3g1v0336200.10, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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