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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0336200 |
| Transcript ID | LotjaGi3g1v0336200.3 |
| Related isoforms 14 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70632693..70637882) extracted from Lotus japonicus Gifu genome v1.2.
TTCGCTATTTTGAATCGAAACGCAACTAGTAGGTGTAGGTTTTGTTGAGATCTCGGATTAGGTTTTGTTTGTAATTCAAT TTTGTAATTAGAGTTGTATGCAATTTGTTCTTTGCTGTTTTGTTATCTGTAGTATATGTTAAATTTGGTTGTGTCTTGAA TTTACCTATTGGCTATTGGTTGGTTCTTGTATGCGAATCTCTAATTCTGCTCCTGCTATGCATATTATTCACCATAGTTT GGAATTTGGATGCTAGGTTAATTTGTATACTTTTTGATTAATTGATTGTGTTTTGGCAGCATGGATCTCGTGATTACGAC AGAGAATCATCAAGAAGCAGAGAAAAGGAGCGAGACAAAGGAAGGGAAAAGGATAGAAAGAGGGAAAAAGGGAGGGACAG GGATCGGGAAAAAAGCAGGGACAGGGATAGGGATCATGAGAGAAGCAGGGACAGGGACAGGGATAGTGAGAGGAGCAGGG ATAGGGACAGAGATAGGGAGAGAAGCAAAGATAGGGAACGTGGTGATCGGGATGGGGAGAAGGAAAGGGACCACCATCAT AGAGACAGACATAGGGATCGTAGTGAGAGAAGGGAAAGAGGGAGAGATAGAGATGATGATGATTTTTACAGAAGCCGGGA CAGCGATAGGTAAAAGTTTATTTGGACTTGGAGCTTGAGAAATTTAATCAGCTTCTACTTTACTGTGAAGTTCTTATTGC ATGCAATCCATTGTCTTATACTATAAGAATTCACAAATTTATATCCAAAACATTAGCAATTATTTTCATTAGTTTTTCCA TTCATATTCTTTTTTCAATTTTTATCTTAAATTGTTTTATGGTACAGACGAAGGGATTATGATAGAGAGGATAGGCATAA GCGCAAGTCTCGTTCTCGATCTAGATCAAAGTCAGTGGGTCGTTCCGAGCATAGATCAAGGTCACGTTCACGCTCAAAAA GGTATGTCTTTGAAAGATCCTTAAGATTTAGTATGCAGATGTGCAGTTGTGCTATATGATGCATGCATCTGGTGTTTGGG AAATTCTAAGTTCTGTTTTGTAAAATATAAAATAGTTAGATGTGCAAAGTGGAACTGGTATGGTGTTGTCAATGCTTGGA AGACAGCTATAACTAATGATTTTCATAGTTGGTTCTAAAGCCATTTTATGTCAGTTTTTATTTCTGTTACATCCTTAATA ATTTTAGTTTGTTAGAATCACTCTCTAGTTCCTTATTGTTTCACCAAATTTTTAACCTTGATAAGACATGTTGACTTGAC ATTTTTTATCTGGCAATCATTCATAATCATACGTCCTTGTGTTAGTCTTCTCCTTCCGCATTATAACTTGCACAAGTCTT TTCTCTCAATTTCACCAAAGCCTGAAATTCATCCATGTCATGATAATAACAGTTAACGGAATTTTAACCCTGTTGGCCTT CAGGTCTTACAAATTTTAGAGCTATACTGACTTAACTAAAAGTTTCTGAACTATAGGAACTTAATTAAACCTTTGATAAA ATTAAAGGCAGAGGTGTAAAGTAACTTAACCTTTCAACTTAAGGGAACACAACATCACCTGAAGTATAGCCAAATGATAA GGGCATCTATCCCTATTTCAATTTTTATCAGTCGCTGAAGGGCTCCTTGCTGTTTAATGATTTATATATATTAATCTGTT CTAGATAATATCTGATACAACTAAATTTTACATTTAATATGGCTTGAAAATTTACTTGCATTTGTGGAAACTAATTTAAT TTTATTGAGGTATATAAGTTTCTGTTGGTATAACTATAGTTAAGCTGTTTGTAATCGTAGTTAGAATTCTGTTTCCAGAT TCTGTTCAGTTGTAAAGACTATATAAGAGTATCCACTTGTATTCTTTTCAATTTTATTTTATTGAGGTATATATAGTCCA GCATGTATTATACTTAGTGATTTAGTTCTTAGTTAGTTTACTATCTTACCTATAGTTAAGTTTCTGTTGTATAACTATAG TTAGGCTGTTTGTAATCGTAGTTAGAATTCTGTTTCCAGATTCTGTTCAGTTGTAAAGACTATATAAGAGTATTCACTTG TATTCTTTTCAATTATTGTAACCATCTTCATTTAAAATATTTCTATCAACTATGTTCTCTCTGTTTCTAAACATATTTAC TTACAGCAAAAGGACTAGTGGTTTTGATATGGCCCCCCCTGCTTCTGCAATGTTGGCTGGTGCTTCTGCTGTTACAGGTA CATGTACATCTACTCATGTATATATTACAAACATTTTTAACCTTTTTTTTTTTTTGCTGCATTGGAAAAACAAACATTTT TAACCTTAACTGCTTTCTTTCTTTTTTTGGTCCTAGTATGGAAAATTATCAAATTGCATGGTGTAACTTGGTAAGCCAAG TTCAGTCACTATCAGTATATAACTTTCACAACTGGTTTCCATGGTGTGTAGTTTTGTCTTTCTTTTTACTTAGTGATATA ATTCTGGAACTAAAAGGTGTTTTGGTTTTTTTGTCTTGTTTTTGGTGTTTGTTTGTTTTGTTTCTATGTCTTGTCATATG TTCTAAGAAGGCAATGTCGGGCTACTAGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTTTATGTCCA CGGAGGAATCAATGCACCTGTTTTTGGTGGGTCTTGTTCGTCTTCAACTGGAAACCGTTAGCTACTTTGGTAGACTTGCA AATATTATTTCTAAAGCTTCTTAATAAAGTGCTCTTTTAATCTTATTGATATACTATATGCAATGAGGTTAAATTATGCT TCAGCTGATGCCAATTGTAGCAGGAGTCATTTGATACTCATATAATTGTATTGCAAAAGATTTGAATAATGAATTTATTC TGAGATGCTCATACCTTTATTTGCAGGTCAGATCCCCGGTGCAAATCCTGCAATTCCTGGAATGTTTCCAAATATGTTTC CATTGGCTACAAGTCAGGTACAAATCCTGCTATATGTTTCCAAATATTCTTAACTCGTTATGCAGGATGACTTTTTATTG AATTTCACCGTTTTCTCTTGTCTTTTTATAGATGCAGCCATTTAGTGCTCTTCCTGTCATGCCAGTTCAGGCTATGACTC AACAGGTAAATGGATTTTTCTGGTGATGAGATTTTCTTCCTTTCTCTTTTAGCATTATTTCCCATTATGGCCTTTGTTTG ATGTTCTGAATGTACAGGCTACAAGGCATGCTAGGCGAGTGTATGTTGGGGGCCTTCCTCCTACAGCCAATGAGCAGGTA ATATATAGTAGTTCAGAATGATCTTTCATGATTGGTTTCTCAATTAGAATAAGTAGATTATCTGCTAAATTAGGTACTTG CCAAATAGTTTTTTGTGTTTATCAAGTGATCTAGCTTGCATTTTTTACTGCATGCTTCTGATACTTGTGAGTTCCTCGGG TTGAGGAAGCAATGCTGGTAGGACTTGACCACAGTGGAAAACAAGATGGATAATATATATTTTTTGGCTTGTTTTTTTTC CTGAAACTTTTGGGTTTTTTTTTGCTTCTAACTTTGATACATTGCAGTCAGTTGCAACTTTCTTTAGTCAAGTTATGGCC AAGATTGGGGGAAACACTGCTGGTCCAGGTACATTATGATCTTAAATGAATTTTGCCATTTTGGTGACTCTACGGGCTTT CCATTTGATTCAGTTTTATTTGTGCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAGTTCGCTTTTGTG GAGATGAGGTCTGTTGAAGAAGCTAGCAATGCTATGGCTTTAGATGGGATTATTTTTGAGGTATTTTTTTCTTTCCTAAC TGAATCTTGGGTTTCTGTTTTGGTTTTGTAAATCATTTGTCATAATCCAATTTTCATTTTTAATTCAGGGGGCACCTGTT AAGGTCAGGAGACCTACTGATTACAATCCTTCTCTGGCTGCTACCCTAGGCCCAAGCCAACCTAACCCAAACCTTAATCT GGGTGCTGTTGGTTTAACACCTGGATCTGCCGGTGGACTTGATGGACCTGATCGAATTTTTGTGGGAGGACTTCCTTACT ACTTCACTGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAA ACTGGGAATTCAAAAGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACGGACATTGCCTGTGCAGCTCTCAATGG AATAAAAATGGGAGATAAGACACTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCTCAGCAGCCTAAGCCTGAGCAAG AGAGCATTTTAATGCATGCGCAGCAGCAGATTGCTCTACAGGTCTGATGGGTTTGTTACTTATGTTTTGTGTTACAAATA TCTTCATGCACATATTTAATTTTCTAATTGATGTACACTTCTGAATTCTGCAGAAACTTATGTTACAGCCAGCATTAGTG GCAACAAAGGTGGTGTGTTTAACTCATGCTGTTTCTGCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAGATTCTTGA TGATATGAGACAGGAGTGCTCCAAATTTGGTAATTTCTGATTTAGTTTGCTTGTCTTTCACTGCAAACTATAATACATTC ATATTAATTTTTCTGTGTTATTTTTTATTTGTTTTACAGCCATTTGTAGTCCCACATTCTCCCATAAAGAATCAGGCCTA ACTTACAGACTGAAGCCTCCATAACCTTCACTCTTTGTTCACACATACTTGTTTTCATTGCATGCTTTTGAAAATTTGTG TGCATGTATGATATATCGGTGTATTTGTTCTAACACAATCTGCAGGTACTTTGGTGAATGTGGTGATCCCTCGCCCACCA CCCGATGGTGAACAGTTGCCTGGAGTTGGAAAGGTTTGTTCTTTTGACCTTATTCTGGAAGTTTTTTCCCCTTGTCCTCC AAGCATAATCTGCTTAAAAAGGTGTTTTGCTTTTGGGTAGCAATATTTCGTACATGCTATGTATTGTTTAAAATACTTTT TTGTACTTGCAGGTGTTTTTGGAGTATGTTGATGTTGATGGTGCTACAAAAGCCCGTGCAGGACTGAATGGACGCAAATT TGGCGGGAATCAAGTAATAGCTGTCTTCTATTCGGAGAATAAATTTGCGCAGGGAGATTATGAAGGCTAA
CDS sequence (LotjaGi3g1v0336200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCCCCCCTGCTTCTGCAATGTTGGCTGGTGCTTCTGCTGTTACAGGTCAGATCCCCGGTGCAAATCCTGCAATTCC TGGAATGTTTCCAAATATGTTTCCATTGGCTACAAGTCAGATGCAGCCATTTAGTGCTCTTCCTGTCATGCCAGTTCAGG CTATGACTCAACAGGCTACAAGGCATGCTAGGCGAGTGTATGTTGGGGGCCTTCCTCCTACAGCCAATGAGCAGTCAGTT GCAACTTTCTTTAGTCAAGTTATGGCCAAGATTGGGGGAAACACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACAT TAACCATGACAAAAAGTTCGCTTTTGTGGAGATGAGGTCTGTTGAAGAAGCTAGCAATGCTATGGCTTTAGATGGGATTA TTTTTGAGGGGGCACCTGTTAAGGTCAGGAGACCTACTGATTACAATCCTTCTCTGGCTGCTACCCTAGGCCCAAGCCAA CCTAACCCAAACCTTAATCTGGGTGCTGTTGGTTTAACACCTGGATCTGCCGGTGGACTTGATGGACCTGATCGAATTTT TGTGGGAGGACTTCCTTACTACTTCACTGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTG ATCTAGTGAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACGGACATT GCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACACTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCTCA GCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCGCAGCAGCAGATTGCTCTACAGAAACTTATGTTACAGCCAG CATTAGTGGCAACAAAGGTGGTGTGTTTAACTCATGCTGTTTCTGCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAG ATTCTTGATGATATGAGACAGGAGTGCTCCAAATTTGGTACTTTGGTGAATGTGGTGATCCCTCGCCCACCACCCGATGG TGAACAGTTGCCTGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTTGATGGTGCTACAAAAGCCCGTGCAGGACTGA ATGGACGCAAATTTGGCGGGAATCAAGTAATAGCTGTCTTCTATTCGGAGAATAAATTTGCGCAGGGAGATTATGAAGGC TAA
Protein sequence (LotjaGi3g1v0336200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPPASAMLAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSV ATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQ PNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDI ACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKEDEDYEE ILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKFAQGDYEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 399 | 399 | 4.9E-232 | – | |
| PANTHER | 1 | 399 | 399 | 4.9E-232 | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| TIGRFAM | 6 | 398 | 393 | 9.1E-158 | ||
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 400 | 376 | - | – | |
| SUPERFAMILY | 47 | 150 | 104 | 4.43E-17 | ||
| Gene3D | 59 | 156 | 98 | 1.0E-29 | ||
| CDD | 63 | 145 | 83 | 1.80517E-41 | – | |
| ProSiteProfiles | 64 | 147 | 84 | 13.004 | ||
| SMART | 65 | 143 | 79 | 7.3E-14 | ||
| Gene3D | 157 | 275 | 119 | 1.8E-21 | ||
| SUPERFAMILY | 181 | 269 | 89 | 2.69E-23 | ||
| CDD | 184 | 260 | 77 | 3.17353E-44 | – | |
| ProSiteProfiles | 184 | 262 | 79 | 15.494 | ||
| SMART | 185 | 258 | 74 | 7.8E-21 | ||
| Pfam | 186 | 255 | 70 | 2.6E-17 | ||
| Gene3D | 294 | 399 | 106 | 9.1E-30 | ||
| SUPERFAMILY | 295 | 392 | 98 | 5.91E-18 | ||
| CDD | 298 | 386 | 89 | 2.50088E-42 | – | |
| ProSiteProfiles | 305 | 391 | 87 | 9.047 | ||
| SMART | 306 | 387 | 82 | 0.052 | ||
| Pfam | 323 | 383 | 61 | 8.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
Expression pattern of LotjaGi3g1v0336200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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