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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0336200 |
| Transcript ID | LotjaGi3g1v0336200.7 |
| Related isoforms 14 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Splicing factor u2af large subunit, putative; TAIR: AT4G36690.2 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I1JZD6|I1JZD6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70632750..70637292) extracted from Lotus japonicus Gifu genome v1.2.
TTAGGTTTTGTTTGTAATTCAATTTTGTAATTAGAGTTGTATGCAATTTGTTCTTTGCTGTTTTGTTATCTGTAGTATAT GTTAAATTTGGTTGTGTCTTGAATTTACCTATTGGCTATTGGTTGGTTCTTGTATGCGAATCTCTAATTCTGCTCCTGCT ATGCATATTATTCACCATAGTTTGGAATTTGGATGCTAGGTTAATTTGTATACTTTTTGATTAATTGATTGTGTTTTGGC AGCATGGATCTCGTGATTACGACAGAGAATCATCAAGAAGCAGAGAAAAGGAGCGAGACAAAGGAAGGGAAAAGGATAGA AAGAGGGAAAAAGGGAGGGACAGGGATCGGGAAAAAAGCAGGGACAGGGATAGGGATCATGAGAGAAGCAGGGACAGGGA CAGGGATAGTGAGAGGAGCAGGGATAGGGACAGAGATAGGGAGAGAAGCAAAGATAGGGAACGTGGTGATCGGGATGGGG AGAAGGAAAGGGACCACCATCATAGAGACAGACATAGGGATCGTAGTGAGAGAAGGGAAAGAGGGAGAGATAGAGATGAT GATGATTTTTACAGAAGCCGGGACAGCGATAGGTAAAAGTTTATTTGGACTTGGAGCTTGAGAAATTTAATCAGCTTCTA CTTTACTGTGAAGTTCTTATTGCATGCAATCCATTGTCTTATACTATAAGAATTCACAAATTTATATCCAAAACATTAGC AATTATTTTCATTAGTTTTTCCATTCATATTCTTTTTTCAATTTTTATCTTAAATTGTTTTATGGTACAGACGAAGGGAT TATGATAGAGAGGATAGGCATAAGCGCAAGTCTCGTTCTCGATCTAGATCAAAGTCAGTGGGTCGTTCCGAGCATAGATC AAGGTCACGTTCACGCTCAAAAAGGTATGTCTTTGAAAGATCCTTAAGATTTAGTATGCAGATGTGCAGTTGTGCTATAT GATGCATGCATCTGGTGTTTGGGAAATTCTAAGTTCTGTTTTGTAAAATATAAAATAGTTAGATGTGCAAAGTGGAACTG GTATGGTGTTGTCAATGCTTGGAAGACAGCTATAACTAATGATTTTCATAGTTGGTTCTAAAGCCATTTTATGTCAGTTT TTATTTCTGTTACATCCTTAATAATTTTAGTTTGTTAGAATCACTCTCTAGTTCCTTATTGTTTCACCAAATTTTTAACC TTGATAAGACATGTTGACTTGACATTTTTTATCTGGCAATCATTCATAATCATACGTCCTTGTGTTAGTCTTCTCCTTCC GCATTATAACTTGCACAAGTCTTTTCTCTCAATTTCACCAAAGCCTGAAATTCATCCATGTCATGATAATAACAGTTAAC GGAATTTTAACCCTGTTGGCCTTCAGGTCTTACAAATTTTAGAGCTATACTGACTTAACTAAAAGTTTCTGAACTATAGG AACTTAATTAAACCTTTGATAAAATTAAAGGCAGAGGTGTAAAGTAACTTAACCTTTCAACTTAAGGGAACACAACATCA CCTGAAGTATAGCCAAATGATAAGGGCATCTATCCCTATTTCAATTTTTATCAGTCGCTGAAGGGCTCCTTGCTGTTTAA TGATTTATATATATTAATCTGTTCTAGATAATATCTGATACAACTAAATTTTACATTTAATATGGCTTGAAAATTTACTT GCATTTGTGGAAACTAATTTAATTTTATTGAGGTATATAAGTTTCTGTTGGTATAACTATAGTTAAGCTGTTTGTAATCG TAGTTAGAATTCTGTTTCCAGATTCTGTTCAGTTGTAAAGACTATATAAGAGTATCCACTTGTATTCTTTTCAATTTTAT TTTATTGAGGTATATATAGTCCAGCATGTATTATACTTAGTGATTTAGTTCTTAGTTAGTTTACTATCTTACCTATAGTT AAGTTTCTGTTGTATAACTATAGTTAGGCTGTTTGTAATCGTAGTTAGAATTCTGTTTCCAGATTCTGTTCAGTTGTAAA GACTATATAAGAGTATTCACTTGTATTCTTTTCAATTATTGTAACCATCTTCATTTAAAATATTTCTATCAACTATGTTC TCTCTGTTTCTAAACATATTTACTTACAGCAAAAGGACTAGTGGTTTTGATATGGCCCCCCCTGCTTCTGCAATGTTGGC TGGTGCTTCTGCTGTTACAGGTACATGTACATCTACTCATGTATATATTACAAACATTTTTAACCTTTTTTTTTTTTTGC TGCATTGGAAAAACAAACATTTTTAACCTTAACTGCTTTCTTTCTTTTTTTGGTCCTAGTATGGAAAATTATCAAATTGC ATGGTGTAACTTGGTAAGCCAAGTTCAGTCACTATCAGTATATAACTTTCACAACTGGTTTCCATGGTGTGTAGTTTTGT CTTTCTTTTTACTTAGTGATATAATTCTGGAACTAAAAGGTGTTTTGGTTTTTTTGTCTTGTTTTTGGTGTTTGTTTGTT TTGTTTCTATGTCTTGTCATATGTTCTAAGAAGGCAATGTCGGGCTACTAGCCCCACTGTGCTGACAATGGGCGTGAGCC GACTTCTGTAGCTTTTATGTCCACGGAGGAATCAATGCACCTGTTTTTGGTGGGTCTTGTTCGTCTTCAACTGGAAACCG TTAGCTACTTTGGTAGACTTGCAAATATTATTTCTAAAGCTTCTTAATAAAGTGCTCTTTTAATCTTATTGATATACTAT ATGCAATGAGGTTAAATTATGCTTCAGCTGATGCCAATTGTAGCAGGAGTCATTTGATACTCATATAATTGTATTGCAAA AGATTTGAATAATGAATTTATTCTGAGATGCTCATACCTTTATTTGCAGGTCAGATCCCCGGTGCAAATCCTGCAATTCC TGGAATGTTTCCAAATATGTTTCCATTGGCTACAAGTCAGGTACAAATCCTGCTATATGTTTCCAAATATTCTTAACTCG TTATGCAGGATGACTTTTTATTGAATTTCACCGTTTTCTCTTGTCTTTTTATAGATGCAGCCATTTAGTGCTCTTCCTGT CATGCCAGTTCAGGCTATGACTCAACAGGTAAATGGATTTTTCTGGTGATGAGATTTTCTTCCTTTCTCTTTTAGCATTA TTTCCCATTATGGCCTTTGTTTGATGTTCTGAATGTACAGGCTACAAGGCATGCTAGGCGAGTGTATGTTGGGGGCCTTC CTCCTACAGCCAATGAGCAGGTAATATATAGTAGTTCAGAATGATCTTTCATGATTGGTTTCTCAATTAGAATAAGTAGA TTATCTGCTAAATTAGGTACTTGCCAAATAGTTTTTTGTGTTTATCAAGTGATCTAGCTTGCATTTTTTACTGCATGCTT CTGATACTTGTGAGTTCCTCGGGTTGAGGAAGCAATGCTGGTAGGACTTGACCACAGTGGAAAACAAGATGGATAATATA TATTTTTTGGCTTGTTTTTTTTCCTGAAACTTTTGGGTTTTTTTTTGCTTCTAACTTTGATACATTGCAGTCAGTTGCAA CTTTCTTTAGTCAAGTTATGGCCAAGATTGGGGGAAACACTGCTGGTCCAGGTACATTATGATCTTAAATGAATTTTGCC ATTTTGGTGACTCTACGGGCTTTCCATTTGATTCAGTTTTATTTGTGCAGGTGATGCGGTGGTCAATGTTTACATTAACC ATGACAAAAAGTTCGCTTTTGTGGAGATGAGGTCTGTTGAAGAAGCTAGCAATGCTATGGCTTTAGATGGGATTATTTTT GAGGTATTTTTTTCTTTCCTAACTGAATCTTGGGTTTCTGTTTTGGTTTTGTAAATCATTTGTCATAATCCAATTTTCAT TTTTAATTCAGGGGGCACCTGTTAAGGTCAGGAGACCTACTGATTACAATCCTTCTCTGGCTGCTACCCTAGGCCCAAGC CAACCTAACCCAAACCTTAATCTGGGTGCTGTTGGTTTAACACCTGGATCTGCCGGTGGACTTGATGGACCTGATCGAAT TTTTGTGGGAGGACTTCCTTACTACTTCACTGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGGGGTT TTGATCTAGTGAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACGGAC ATTGCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACACTTACAGTTAGACGAGCTAATCAAGGTGCAAACCC TCAGCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCGCAGCAGCAGATTGCTCTACAGGTCTGATGGGTTTGTT ACTTATGTTTTGTGTTACAAATATCTTCATGCACATATTTAATTTTCTAATTGATGTACACTTCTGAATTCTGCAGAAAC TTATGTTACAGCCAGCATTAGTGGCAACAAAGGTGGTGTGTTTAACTCATGCTGTTTCTGCTGATGAGCTCAAAGAAGAT GAGGACTATGAAGAGATTCTTGATGATATGAGACAGGAGTGCTCCAAATTTGGTAATTTCTGA
CDS sequence (LotjaGi3g1v0336200.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCCCCCCTGCTTCTGCAATGTTGGCTGGTGCTTCTGCTGTTACAGGTCAGATCCCCGGTGCAAATCCTGCAATTCC TGGAATGTTTCCAAATATGTTTCCATTGGCTACAAGTCAGATGCAGCCATTTAGTGCTCTTCCTGTCATGCCAGTTCAGG CTATGACTCAACAGGCTACAAGGCATGCTAGGCGAGTGTATGTTGGGGGCCTTCCTCCTACAGCCAATGAGCAGTCAGTT GCAACTTTCTTTAGTCAAGTTATGGCCAAGATTGGGGGAAACACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACAT TAACCATGACAAAAAGTTCGCTTTTGTGGAGATGAGGTCTGTTGAAGAAGCTAGCAATGCTATGGCTTTAGATGGGATTA TTTTTGAGGGGGCACCTGTTAAGGTCAGGAGACCTACTGATTACAATCCTTCTCTGGCTGCTACCCTAGGCCCAAGCCAA CCTAACCCAAACCTTAATCTGGGTGCTGTTGGTTTAACACCTGGATCTGCCGGTGGACTTGATGGACCTGATCGAATTTT TGTGGGAGGACTTCCTTACTACTTCACTGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTG ATCTAGTGAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACGGACATT GCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACACTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCTCA GCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCGCAGCAGCAGATTGCTCTACAGAAACTTATGTTACAGCCAG CATTAGTGGCAACAAAGGTGGTGTGTTTAACTCATGCTGTTTCTGCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAG ATTCTTGATGATATGAGACAGGAGTGCTCCAAATTTGGTAATTTCTGA
Protein sequence (LotjaGi3g1v0336200.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPPASAMLAGASAVTGQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSV ATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQ PNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDI ACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKEDEDYEE ILDDMRQECSKFGNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 333 | 333 | 8.2E-196 | – | |
| PANTHER | 1 | 333 | 333 | 8.2E-196 | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| TIGRFAM | 6 | 334 | 329 | 1.6E-126 | ||
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 335 | 311 | - | – | |
| SUPERFAMILY | 47 | 150 | 104 | 3.09E-17 | ||
| Gene3D | 59 | 157 | 99 | 7.4E-30 | ||
| CDD | 63 | 145 | 83 | 3.88177E-42 | – | |
| ProSiteProfiles | 64 | 147 | 84 | 13.004 | ||
| SMART | 65 | 143 | 79 | 7.3E-14 | ||
| Gene3D | 158 | 275 | 118 | 1.4E-21 | ||
| SUPERFAMILY | 180 | 269 | 90 | 1.48E-23 | ||
| ProSiteProfiles | 184 | 262 | 79 | 15.494 | ||
| CDD | 184 | 260 | 77 | 4.19465E-45 | – | |
| SMART | 185 | 258 | 74 | 7.8E-21 | ||
| Pfam | 186 | 255 | 70 | 1.9E-17 | ||
| Gene3D | 294 | 335 | 42 | 2.1E-8 | ||
| CDD | 298 | 334 | 37 | 7.23514E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
Expression pattern of LotjaGi3g1v0336200.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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