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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0342800 |
| Transcript ID | LotjaGi3g1v0342800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 4-coumarate:CoA ligase-like protein; TAIR: AT3G21240.1 4-coumarate:CoA ligase 2; Swiss-Prot: sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1; TrEMBL-Plants: tr|Q8W558|Q8W558_9FABA 4-coumarate:CoA ligase; Found in the gene: LotjaGi3g1v0342800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71829782..71835291) extracted from Lotus japonicus Gifu genome v1.2.
GCACAAACCAAAAATATTAGGCGTTTGATTTGACCACACAATTGCATTGCCAAAAATCATAATCCACCACTCTCACCAAC TCCTCTAGTTACATTCACACCTCACCAACTATATGTTATCAATTTCCCATTTTATTTATCCTCTTCCAAAATTATTTCCT CATTTTCTCCATTTTGTCCCTCACCAACCACCACCTTAACAAGTCCTATATTACAACTATAGTTCTTGTTCATTTCTCAG GGCAGAGGAATTCAGCTCAGACTCCATAGTCCATATTCATACACACTCACAATTTCCTCTGTTTTTCTCTTCCTCTTCCT CAATCCCACCATGGCAATCGAGAACAAGGAGCAAAAACCAACCAAGGAGGAGTTCATTTTCAAGTCCAAGCTTCCTGATA TCTACATTCCCAAACACCTTCCCCTACATTCATACTGCTTTGAAAATCTCTCAGAGTTCGGTTCACGCCCTTGTTTGATA AACGCTCCAACCGGTGACATTTTCACTTACCACGACGTGGACCTCAAGGCACGACGAGTAGCTTCTGGTCTCAACAAATT GGGTGTCCAACAAGGTGATGTTATCATGATCCTCCTCCCTAACACTCCAGAATATGTGTTTTCTTTCCTCGGCGCTTCCT TTCTCGGCGCCATGACAACCGCCGCAAACCCCTTCTTCACCGCCGCTGAAATCGCCAAACAAGCAAAAGCTTCAAATTCC AAGTTGATCATAACACAAGCGTCTTACTATGAAAAGGTGAAGGACTTGGATTTGAAGCTGGTTTTCATTGATTCTCCTCC AAATGGGTACTTGCATTTCAGTGAAATTGCTGATTCTGATGAAAATGAAATGCCAGAGGTGAAGATCAACCCTGATGATG TTGTAGCATTGCCTTATTCTTCAGGAACAACAGGGCTTCCAAAAGGGGTTATGCTAACACACAAGGGGTTAGTTACCAGC ATTGCTCAACAAGTTGATGGAGAGAATCCAAACCTCTATTACCATTGTGAAGATGTGATACTCTGTGTTCTTCCCCTGTT TCACATTTACTCTCTGAACTCTGTTTTGCTCTGTGGCTTAAGAGCCAAAGCTGCGATTTTGTTGATGCCCAAGTTCGATA TTCATGCTTTGCTGCCTCTGGTGAACAAATATAGAATCACCATTATGCCGGTTGTGCCGCCGATTGTTCTGGCCATTGCT AAGTCCCCTGATCTTGAGAAACATGATCTTTCTTCCATCAGGGTGTTGAAATCTGGTGGAGCACCACTTGGGAAGGAGCT TGAAGACAGTGTCAGGGCCAAATTCCCCAAAGCCAAACTTGGACAGGTGAATATTCATTATATAACTTTTTCTATAGCTA TCTGCCGCAAATTCTTGACTCTTGATTCTTACATTAAATGGTTTAAATTGATTAGTCAAAAGCTGAATTGGTCGAAAATT TTATACACTTGTCATTTTACTACTTGCTATTGGGAATAGTAGATGATTCGAATTCCTAATTACTTGTTTAAACTTAAGAA ATTGGATTAATTGATTTTCTAAATTGTTTATGATTAGCTTAGGAAGAAGGTAAGGCTAATAAATTGATGATCAATTTTTG CAGGGTTATGGGATGACAGAGGCAGGTCCAGTGTTGACAATGTGTTTATCATTTGCTAAAGAGCCGCTAGATGTGAAATC AGGTGCATGTGGAACTGTTGTGAGGAATGCAGAGATGAAGATTGTGGATCCCGAAACTGATACTTCTTTACCTAGGAATC AACCTGGTGAAATTTGTATTAGAGGTGACCAAATCATGAAAGGTATTATATCTAACTCAAGACAACAAACTTACTCCTAT TCATTCATTCAATAATATTAGGAGGGGAAAATGAATAATTTTAATCAAAATTAATTATAATTAGTTTTAAATAAATATTA TAAAATCTTAAGAATATTAACATGATGTTTAATTATTTTTTATTAATAATTTTATTTAATACGTCTACTACCATTTAAGT CATAGGAATCTTACATTCGCATGACCAACCGTTTTGATATGTTTGACAAAAAAGATAGGTAGACAAAAAAACAATTTATA AACTATGCAGTTTAATTTGTGGCAGTTCTTGCTACAAACTACATATATTTGAGGTGTTGTCATTATAATTAGGCTTAATT ACAACTTTGGTCCCCGATGTTTACCAAAGCCACGATTTTGGTCCCCACCTAATTTAATTACATGGATGGTCCCCGACGTT GTAGGTCGTGTGCAACGTTAGTCCTACCGTTTATTTCTTAATGGAGGAGGCTTACGTGGACGTCTAGTTGGAGAGAAAAA GGAGATCCGAGGAGAGAGGGAAGCACGTGAGTATCACGTGAACTCACGTGAACCTTATATGAACTCATTATACCCAAATC TGAAACCCTAGGGATCTAAATCGCGTTACCTTCTTCGTTCCAGGGAGGTCAGGGGTTTGGGTATAATGGGTTCAGATAAG GGTCACGTGATACTCACGTGCTTCCCTCTCTCCTCATACCTCATTTCTCTCTCCAACTGGACGTCCACGTAAACCTCCTC CATTAAGAAATAAACGGTAGGACTAACGTTGCACACGGCCTACAACGTCGGGGACCATCCATGTAATTAAATTAGGTGGG GGACCAAAATCGTGGCATTGGTAAACGTCGGGGACCAATCAGTACTTCTTCTTTGATCTTAATTCAGTACTAATCCACAT TTTAAATTGTAATAAGTTACTTGAAATTTGAAATACGAGTTCACTTATCTTGAATAAATGACTCAATATTTAAATGTGTA AATGAGAGATTCTCATGACTGCATAAAATATACATTTTTAATCAATATATATAAAATGTAGGTAGTTCCAGCCCAGAACA AAATTATATCATCGTTTGATAGGTAGTTATTTTAATCGAGTTGGTGTAACTTACTAACTTATTTGGAAAAGAAAATATGA AACTTTACTGTTTTTTGCACCATCAAATAGTAAATTATGAAGAAAAAATCAAATACAATTAATTATAAAATCATTCATTT TGAAAAATGAATATTCAACGCACCTTGTATTTATCGCTTAGTCTACACCGAACCACGAAAGTTCCTTTGTCTTCAAAAGA ACTTCCAGCCTTTGGTTAATGTTGAAGTATTTTAATAAGCGATGACTTATGTTAAGGCATCTCCAACAACAAATCTTCAT TTGTCAAGTAATGCTTACTTGTTGTCAAAGTCACAACACTTATGCATAAAAAAGTCATGAAATGAGTCTTGGGTAGCATG CCAACCCTGAGGAAAGTGAGTTCATTCAATTATGTATCATTGCCGAAAACATAGATTTTCACCTACCAACAATATTATTG GCAACTCCACCTTAGTAGACCACACGATTGTTAAAGTATAGTACTTAAATATAAGAAAATGAAGGATAAAAAGCTTTTAG TATTGTCTGCCACTATTATGTTAAAAAAGTACACTTGCAATAATTGATTTATTAAAAAACATGTTGAGTTTGAGTAAACA GTTTAATAAAAAAAAATAATGTTAATAAGTGTTTATTGTTTGTTCATAAACTACGTGCTTTAAGTAATTCATAAAAATAA ATTTAAAATAACTTATAAATGGGTCATATATTTATATGTATAAGTTTTCTTTAATACTTGCATAAGTGATTATACTATAT GATAAGTATAAATAAACTCTTTCAAAGGTAATAGTATTTTAACAAGGGATTTGTTCTTTGTGTCACTTAGGTTATCTAAA TGACCCTGAGGCTACTGAGAGGACTATAGACAAAGAAGGTTGGTTGCATACAGGTGATATTGGATACATCGACGAAGATG ATGAGTTGTTCATCGTTGATAGGTTGAAGGAATTGATCAAATATAAAGGTTTTCAAGTGGCTCCAGCTGAACTCGAAGCC CTTATTCTCTCACACCCTAAGATCTCAGATGTTGCTGTGGTCCCGTAAGTGCACCAAATTTTGAAAAATGCTTATAACAC TCATTTTAATATTATTATTGATTGATTGAAATTCATATATGTTACGCTTCTAGTTTAGCAAGACTCATGAAATTCAACTA ATCAACGAGAAAATGTTACAATTGAGTATTAAAGTGAGAGTTACTTGTATTTCTTAAAAAAATTGTTTGAAAAACGTTGG AAATGGAATCCCTGACACTTTGTAATTTTTGTTCAGAATGAAGGATGAAGCAGCGGGTGAGGTCCCAGTTGCATTTGTGG TGAGATCAAATGGTTGTACAGACACTACTGAGGATGAAATTAAGCAGTTCGTTTCCAAACAGGTAAAAAATAATTAACCA TTTTCTGCTTTTTTTATAATTTTTATCAGCAAATGCATCCAATCTTATGATCTTAATAATGTTTGTGTGTTTTGCAGGTG GTGTTTTACAAAAGAATAAACCGGGTGTTCTTCATTGATGCCATTCCCAAGTCACCCTCAGGCAAAATATTACGAAAGGA CCTAAGGGCCAAGCTTGCAGCGGGTGTTACCAATTGAATAATGTATTCTCGTGCATTAAGAAATTACACATTATTAGTGT ATGATATTAGTGCGTGTACTCGTGCGATGTACGAGAATATATACATCCGATTGTGAGATTTTTGTGAAATAAAATCTTAA AACAATGATACTCCTTCCGTTTCTCAATATTTCTGTCATGTACTTGTGACACATTTCTTAAGTTGTATGTACCCTTTTTT TATACTAGACAATTTTAGTTTTAATTATACTGATTTTAATTTTAACGTGTTATGTTTGAGTTTCTAAAATGTCAGATTTC TACAATTGAAACAGAATCAAGGTTAGATATTGTGACGAATCATCATTTACTGGTGATGGAAGTAGTGAATCTAGTAAGTT CTGTAAAATTCTAAGCAATTATAGAAAAAAGTACATATATAGGAAATCATTAGTTATTTCACTTATTTGTACAGAGTTTT CGTATTGTCTTCTTTCAGATAAAGTTTTAACACAACTACCCGTAAATGATGTAACTAAATTGCGTCACAGATGAGCAAAG ATTTTCACTGCTGTTATAGAGGATTTACTAGCAAAAGAAATGAAAATGCTCGAAATGTATGAGAGATTATTTATATACCA ATTGCCACCCTCTTTTTCTTTCTCTTGGTTGATTTTTTTCATTCACTCACGGGAACTTGCAAGTTGTAACTAGTACAGGC TATCCGCTATTGAGTTCAGCAGAGCAATGCATTGTGAATTGTGATCGCTTTCAAGCTCTTTTTCCTAGAGGAGCTAAAGT GAAATGCCTCTTATATGTTGGTTACTTAAGTGTTGTAATCTTTTTGAAATAGGAAAATGTTTTCTGAAGGTTTCGTTCAA GGGAGATCTAGTTAAATATCCATGTTTGATTTTCTTTTCTGTTTATTAGGCCTCTGCAGGGAATTTGCCTTAATTATGCA CTTCAAAACTCAGCCCAGAATTTTAAAACAGCAATGAGGCTATGGTTCATAATTTGATCCATGATGTTAT
CDS sequence (LotjaGi3g1v0342800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATCGAGAACAAGGAGCAAAAACCAACCAAGGAGGAGTTCATTTTCAAGTCCAAGCTTCCTGATATCTACATTCC CAAACACCTTCCCCTACATTCATACTGCTTTGAAAATCTCTCAGAGTTCGGTTCACGCCCTTGTTTGATAAACGCTCCAA CCGGTGACATTTTCACTTACCACGACGTGGACCTCAAGGCACGACGAGTAGCTTCTGGTCTCAACAAATTGGGTGTCCAA CAAGGTGATGTTATCATGATCCTCCTCCCTAACACTCCAGAATATGTGTTTTCTTTCCTCGGCGCTTCCTTTCTCGGCGC CATGACAACCGCCGCAAACCCCTTCTTCACCGCCGCTGAAATCGCCAAACAAGCAAAAGCTTCAAATTCCAAGTTGATCA TAACACAAGCGTCTTACTATGAAAAGGTGAAGGACTTGGATTTGAAGCTGGTTTTCATTGATTCTCCTCCAAATGGGTAC TTGCATTTCAGTGAAATTGCTGATTCTGATGAAAATGAAATGCCAGAGGTGAAGATCAACCCTGATGATGTTGTAGCATT GCCTTATTCTTCAGGAACAACAGGGCTTCCAAAAGGGGTTATGCTAACACACAAGGGGTTAGTTACCAGCATTGCTCAAC AAGTTGATGGAGAGAATCCAAACCTCTATTACCATTGTGAAGATGTGATACTCTGTGTTCTTCCCCTGTTTCACATTTAC TCTCTGAACTCTGTTTTGCTCTGTGGCTTAAGAGCCAAAGCTGCGATTTTGTTGATGCCCAAGTTCGATATTCATGCTTT GCTGCCTCTGGTGAACAAATATAGAATCACCATTATGCCGGTTGTGCCGCCGATTGTTCTGGCCATTGCTAAGTCCCCTG ATCTTGAGAAACATGATCTTTCTTCCATCAGGGTGTTGAAATCTGGTGGAGCACCACTTGGGAAGGAGCTTGAAGACAGT GTCAGGGCCAAATTCCCCAAAGCCAAACTTGGACAGGGTTATGGGATGACAGAGGCAGGTCCAGTGTTGACAATGTGTTT ATCATTTGCTAAAGAGCCGCTAGATGTGAAATCAGGTGCATGTGGAACTGTTGTGAGGAATGCAGAGATGAAGATTGTGG ATCCCGAAACTGATACTTCTTTACCTAGGAATCAACCTGGTGAAATTTGTATTAGAGGTGACCAAATCATGAAAGGTTAT CTAAATGACCCTGAGGCTACTGAGAGGACTATAGACAAAGAAGGTTGGTTGCATACAGGTGATATTGGATACATCGACGA AGATGATGAGTTGTTCATCGTTGATAGGTTGAAGGAATTGATCAAATATAAAGGTTTTCAAGTGGCTCCAGCTGAACTCG AAGCCCTTATTCTCTCACACCCTAAGATCTCAGATGTTGCTGTGGTCCCAATGAAGGATGAAGCAGCGGGTGAGGTCCCA GTTGCATTTGTGGTGAGATCAAATGGTTGTACAGACACTACTGAGGATGAAATTAAGCAGTTCGTTTCCAAACAGGTGGT GTTTTACAAAAGAATAAACCGGGTGTTCTTCATTGATGCCATTCCCAAGTCACCCTCAGGCAAAATATTACGAAAGGACC TAAGGGCCAAGCTTGCAGCGGGTGTTACCAATTGA
Protein sequence (LotjaGi3g1v0342800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIENKEQKPTKEEFIFKSKLPDIYIPKHLPLHSYCFENLSEFGSRPCLINAPTGDIFTYHDVDLKARRVASGLNKLGVQ QGDVIMILLPNTPEYVFSFLGASFLGAMTTAANPFFTAAEIAKQAKASNSKLIITQASYYEKVKDLDLKLVFIDSPPNGY LHFSEIADSDENEMPEVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGENPNLYYHCEDVILCVLPLFHIY SLNSVLLCGLRAKAAILLMPKFDIHALLPLVNKYRITIMPVVPPIVLAIAKSPDLEKHDLSSIRVLKSGGAPLGKELEDS VRAKFPKAKLGQGYGMTEAGPVLTMCLSFAKEPLDVKSGACGTVVRNAEMKIVDPETDTSLPRNQPGEICIRGDQIMKGY LNDPEATERTIDKEGWLHTGDIGYIDEDDELFIVDRLKELIKYKGFQVAPAELEALILSHPKISDVAVVPMKDEAAGEVP VAFVVRSNGCTDTTEDEIKQFVSKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLAAGVTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 10 | 437 | 428 | 1.6E-169 | ||
| PANTHER | 11 | 543 | 533 | 1.0E-298 | – | |
| PANTHER | 11 | 543 | 533 | 1.0E-298 | – | |
| SUPERFAMILY | 20 | 540 | 521 | 2.49E-149 | – | |
| CDD | 26 | 534 | 509 | 0.0 | – | |
| Pfam | 40 | 443 | 404 | 9.8E-110 | ||
| ProSitePatterns | 187 | 198 | 12 | - | ||
| Gene3D | 438 | 541 | 104 | 6.1E-30 | – | |
| Pfam | 452 | 528 | 77 | 5.7E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi3g1v0342800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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