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LotjaGi3g1v0342800.3

Overview

Field Value
Gene ID LotjaGi3g1v0342800
Transcript ID LotjaGi3g1v0342800.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description 4-coumarate:CoA ligase; TAIR: AT3G21240.1 4-coumarate:CoA ligase 2; Swiss-Prot: sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1; TrEMBL-Plants: tr|Q8W558|Q8W558_9FABA 4-coumarate:CoA ligase; Found in the gene: LotjaGi3g1v0342800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:71830100..71834298) extracted from Lotus japonicus Gifu genome v1.2.

CTCAATCCCACCATGGCAATCGAGAACAAGGAGCAAAAACCAACCAAGGAGGAGTTCATTTTCAAGTCCAAGCTTCCTGA TATCTACATTCCCAAACACCTTCCCCTACATTCATACTGCTTTGAAAATCTCTCAGAGTTCGGTTCACGCCCTTGTTTGA TAAACGCTCCAACCGGTGACATTTTCACTTACCACGACGTGGACCTCAAGGCACGACGAGTAGCTTCTGGTCTCAACAAA TTGGGTGTCCAACAAGGTGATGTTATCATGATCCTCCTCCCTAACACTCCAGAATATGTGTTTTCTTTCCTCGGCGCTTC CTTTCTCGGCGCCATGACAACCGCCGCAAACCCCTTCTTCACCGCCGCTGAAATCGCCAAACAAGCAAAAGCTTCAAATT CCAAGTTGATCATAACACAAGCGTCTTACTATGAAAAGGTGAAGGACTTGGATTTGAAGCTGGTTTTCATTGATTCTCCT CCAAATGGGTACTTGCATTTCAGTGAAATTGCTGATTCTGATGAAAATGAAATGCCAGAGGTGAAGATCAACCCTGATGA TGTTGTAGCATTGCCTTATTCTTCAGGAACAACAGGGCTTCCAAAAGGGGTTATGCTAACACACAAGGGGTTAGTTACCA GCATTGCTCAACAAGTTGATGGAGAGAATCCAAACCTCTATTACCATTGTGAAGATGTGATACTCTGTGTTCTTCCCCTG TTTCACATTTACTCTCTGAACTCTGTTTTGCTCTGTGGCTTAAGAGCCAAAGCTGCGATTTTGTTGATGCCCAAGTTCGA TATTCATGCTTTGCTGCCTCTGGTGAACAAATATAGAATCACCATTATGCCGGTTGTGCCGCCGATTGTTCTGGCCATTG CTAAGTCCCCTGATCTTGAGAAACATGATCTTTCTTCCATCAGGGTGTTGAAATCTGGTGGAGCACCACTTGGGAAGGAG CTTGAAGACAGTGTCAGGGCCAAATTCCCCAAAGCCAAACTTGGACAGGTGAATATTCATTATATAACTTTTTCTATAGC TATCTGCCGCAAATTCTTGACTCTTGATTCTTACATTAAATGGTTTAAATTGATTAGTCAAAAGCTGAATTGGTCGAAAA TTTTATACACTTGTCATTTTACTACTTGCTATTGGGAATAGTAGATGATTCGAATTCCTAATTACTTGTTTAAACTTAAG AAATTGGATTAATTGATTTTCTAAATTGTTTATGATTAGCTTAGGAAGAAGGTAAGGCTAATAAATTGATGATCAATTTT TGCAGGGTTATGGGATGACAGAGGCAGGTCCAGTGTTGACAATGTGTTTATCATTTGCTAAAGAGCCGCTAGATGTGAAA TCAGGTGCATGTGGAACTGTTGTGAGGAATGCAGAGATGAAGATTGTGGATCCCGAAACTGATACTTCTTTACCTAGGAA TCAACCTGGTGAAATTTGTATTAGAGGTGACCAAATCATGAAAGGTATTATATCTAACTCAAGACAACAAACTTACTCCT ATTCATTCATTCAATAATATTAGGAGGGGAAAATGAATAATTTTAATCAAAATTAATTATAATTAGTTTTAAATAAATAT TATAAAATCTTAAGAATATTAACATGATGTTTAATTATTTTTTATTAATAATTTTATTTAATACGTCTACTACCATTTAA GTCATAGGAATCTTACATTCGCATGACCAACCGTTTTGATATGTTTGACAAAAAAGATAGGTAGACAAAAAAACAATTTA TAAACTATGCAGTTTAATTTGTGGCAGTTCTTGCTACAAACTACATATATTTGAGGTGTTGTCATTATAATTAGGCTTAA TTACAACTTTGGTCCCCGATGTTTACCAAAGCCACGATTTTGGTCCCCACCTAATTTAATTACATGGATGGTCCCCGACG TTGTAGGTCGTGTGCAACGTTAGTCCTACCGTTTATTTCTTAATGGAGGAGGCTTACGTGGACGTCTAGTTGGAGAGAAA AAGGAGATCCGAGGAGAGAGGGAAGCACGTGAGTATCACGTGAACTCACGTGAACCTTATATGAACTCATTATACCCAAA TCTGAAACCCTAGGGATCTAAATCGCGTTACCTTCTTCGTTCCAGGGAGGTCAGGGGTTTGGGTATAATGGGTTCAGATA AGGGTCACGTGATACTCACGTGCTTCCCTCTCTCCTCATACCTCATTTCTCTCTCCAACTGGACGTCCACGTAAACCTCC TCCATTAAGAAATAAACGGTAGGACTAACGTTGCACACGGCCTACAACGTCGGGGACCATCCATGTAATTAAATTAGGTG GGGGACCAAAATCGTGGCATTGGTAAACGTCGGGGACCAATCAGTACTTCTTCTTTGATCTTAATTCAGTACTAATCCAC ATTTTAAATTGTAATAAGTTACTTGAAATTTGAAATACGAGTTCACTTATCTTGAATAAATGACTCAATATTTAAATGTG TAAATGAGAGATTCTCATGACTGCATAAAATATACATTTTTAATCAATATATATAAAATGTAGGTAGTTCCAGCCCAGAA CAAAATTATATCATCGTTTGATAGGTAGTTATTTTAATCGAGTTGGTGTAACTTACTAACTTATTTGGAAAAGAAAATAT GAAACTTTACTGTTTTTTGCACCATCAAATAGTAAATTATGAAGAAAAAATCAAATACAATTAATTATAAAATCATTCAT TTTGAAAAATGAATATTCAACGCACCTTGTATTTATCGCTTAGTCTACACCGAACCACGAAAGTTCCTTTGTCTTCAAAA GAACTTCCAGCCTTTGGTTAATGTTGAAGTATTTTAATAAGCGATGACTTATGTTAAGGCATCTCCAACAACAAATCTTC ATTTGTCAAGTAATGCTTACTTGTTGTCAAAGTCACAACACTTATGCATAAAAAAGTCATGAAATGAGTCTTGGGTAGCA TGCCAACCCTGAGGAAAGTGAGTTCATTCAATTATGTATCATTGCCGAAAACATAGATTTTCACCTACCAACAATATTAT TGGCAACTCCACCTTAGTAGACCACACGATTGTTAAAGTATAGTACTTAAATATAAGAAAATGAAGGATAAAAAGCTTTT AGTATTGTCTGCCACTATTATGTTAAAAAAGTACACTTGCAATAATTGATTTATTAAAAAACATGTTGAGTTTGAGTAAA CAGTTTAATAAAAAAAAATAATGTTAATAAGTGTTTATTGTTTGTTCATAAACTACGTGCTTTAAGTAATTCATAAAAAT AAATTTAAAATAACTTATAAATGGGTCATATATTTATATGTATAAGTTTTCTTTAATACTTGCATAAGTGATTATACTAT ATGATAAGTATAAATAAACTCTTTCAAAGGTAATAGTATTTTAACAAGGGATTTGTTCTTTGTGTCACTTAGGTTATCTA AATGACCCTGAGGCTACTGAGAGGACTATAGACAAAGAAGGTTGGTTGCATACAGGTGATATTGGATACATCGACGAAGA TGATGAGTTGTTCATCGTTGATAGGTTGAAGGAATTGATCAAATATAAAGGTTTTCAAGTGGCTCCAGCTGAACTCGAAG CCCTTATTCTCTCACACCCTAAGATCTCAGATGTTGCTGTGGTCCCGTAAGTGCACCAAATTTTGAAAAATGCTTATAAC ACTCATTTTAATATTATTATTGATTGATTGAAATTCATATATGTTACGCTTCTAGTTTAGCAAGACTCATGAAATTCAAC TAATCAACGAGAAAATGTTACAATTGAGTATTAAAGTGAGAGTTACTTGTATTTCTTAAAAAAATTGTTTGAAAAACGTT GGAAATGGAATCCCTGACACTTTGTAATTTTTGTTCAGAATGAAGGATGAAGCAGCGGGTGAGGTCCCAGTTGCATTTGT GGTGAGATCAAATGGTTGTACAGACACTACTGAGGATGAAATTAAGCAGTTCGTTTCCAAACAGGTAAAAAATAATTAAC CATTTTCTGCTTTTTTTATAATTTTTATCAGCAAATGCATCCAATCTTATGATCTTAATAATGTTTGTGTGTTTTGCAGG TGGTGTTTTACAAAAGAATAAACCGGGTGTTCTTCATTGATGCCATTCCCAAGTCACCCTCAGGCAAAATATTACGAAAG GACCTAAGGGCCAAGCTTGCAGCGGGTGTTACCAATTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0342800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAATCGAGAACAAGGAGCAAAAACCAACCAAGGAGGAGTTCATTTTCAAGTCCAAGCTTCCTGATATCTACATTCC CAAACACCTTCCCCTACATTCATACTGCTTTGAAAATCTCTCAGAGTTCGGTTCACGCCCTTGTTTGATAAACGCTCCAA CCGGTGACATTTTCACTTACCACGACGTGGACCTCAAGGCACGACGAGTAGCTTCTGGTCTCAACAAATTGGGTGTCCAA CAAGGTGATGTTATCATGATCCTCCTCCCTAACACTCCAGAATATGTGTTTTCTTTCCTCGGCGCTTCCTTTCTCGGCGC CATGACAACCGCCGCAAACCCCTTCTTCACCGCCGCTGAAATCGCCAAACAAGCAAAAGCTTCAAATTCCAAGTTGATCA TAACACAAGCGTCTTACTATGAAAAGGTGAAGGACTTGGATTTGAAGCTGGTTTTCATTGATTCTCCTCCAAATGGGTAC TTGCATTTCAGTGAAATTGCTGATTCTGATGAAAATGAAATGCCAGAGGTGAAGATCAACCCTGATGATGTTGTAGCATT GCCTTATTCTTCAGGAACAACAGGGCTTCCAAAAGGGGTTATGCTAACACACAAGGGGTTAGTTACCAGCATTGCTCAAC AAGTTGATGGAGAGAATCCAAACCTCTATTACCATTGTGAAGATGTGATACTCTGTGTTCTTCCCCTGTTTCACATTTAC TCTCTGAACTCTGTTTTGCTCTGTGGCTTAAGAGCCAAAGCTGCGATTTTGTTGATGCCCAAGTTCGATATTCATGCTTT GCTGCCTCTGGTGAACAAATATAGAATCACCATTATGCCGGTTGTGCCGCCGATTGTTCTGGCCATTGCTAAGTCCCCTG ATCTTGAGAAACATGATCTTTCTTCCATCAGGGGTTATGGGATGACAGAGGCAGGTCCAGTGTTGACAATGTGTTTATCA TTTGCTAAAGAGCCGCTAGATGTGAAATCAGGTGCATGTGGAACTGTTGTGAGGAATGCAGAGATGAAGATTGTGGATCC CGAAACTGATACTTCTTTACCTAGGAATCAACCTGGTGAAATTTGTATTAGAGGTGACCAAATCATGAAAGGTTATCTAA ATGACCCTGAGGCTACTGAGAGGACTATAGACAAAGAAGGTTGGTTGCATACAGGTGATATTGGATACATCGACGAAGAT GATGAGTTGTTCATCGTTGATAGGTTGAAGGAATTGATCAAATATAAAGTTGCATTTGTGGTGAGATCAAATGGTTGTAC AGACACTACTGAGGATGAAATTAAGCAGTTCGTTTCCAAACAGGTGGTGTTTTACAAAAGAATAAACCGGGTGTTCTTCA TTGATGCCATTCCCAAGTCACCCTCAGGCAAAATATTACGAAAGGACCTAAGGGCCAAGCTTGCAGCGGGTGTTACCAAT TGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0342800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAIENKEQKPTKEEFIFKSKLPDIYIPKHLPLHSYCFENLSEFGSRPCLINAPTGDIFTYHDVDLKARRVASGLNKLGVQ QGDVIMILLPNTPEYVFSFLGASFLGAMTTAANPFFTAAEIAKQAKASNSKLIITQASYYEKVKDLDLKLVFIDSPPNGY LHFSEIADSDENEMPEVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGENPNLYYHCEDVILCVLPLFHIY SLNSVLLCGLRAKAAILLMPKFDIHALLPLVNKYRITIMPVVPPIVLAIAKSPDLEKHDLSSIRGYGMTEAGPVLTMCLS FAKEPLDVKSGACGTVVRNAEMKIVDPETDTSLPRNQPGEICIRGDQIMKGYLNDPEATERTIDKEGWLHTGDIGYIDED DELFIVDRLKELIKYKVAFVVRSNGCTDTTEDEIKQFVSKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLAAGVTN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.12780
10 404 395 1.3E-150
IPR042099
PANTHER
PTHR24096:SF334
11 304 294 6.4E-245 –
PANTHER
PTHR24096
11 304 294 6.4E-245 –
SUPERFAMILY
SSF56801
20 476 457 3.53E-119 –
CDD
cd05904
26 470 445 0.0 –
Pfam
PF00501
40 304 265 6.2E-56
IPR000873
ProSitePatterns
PS00455
187 198 12 -
IPR020845
PANTHER
PTHR24096
305 416 112 6.4E-245 –
PANTHER
PTHR24096:SF334
305 416 112 6.4E-245 –
Gene3D
G3DSA:3.30.300.30
405 480 76 1.1E-11 –
Pfam
PF13193
416 464 49 2.9E-6
IPR025110
PANTHER
PTHR24096
417 479 63 6.4E-245 –
PANTHER
PTHR24096:SF334
417 479 63 6.4E-245 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0342800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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