Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi3g1v0349700
Transcript ID	LotjaGi3g1v0349700.1
Lotus japonicus genome version	Gifu v1.2
Description	DNA-3-methyladenine glycosylase, putative; TAIR: AT5G57970.1 DNA glycosylase superfamily protein; Swiss-Prot: sp\|Q7VG78\|GUAA_HELHP Probable GMP synthase [glutamine]-hydrolyzing]; TrEMBL-Plants: tr\|I1KGT2\|I1KGT2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0349700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:72755140..72764829) extracted from Lotus japonicus Gifu genome v1.2.

TACTTCTGTATAAGCTCTTTTGAGCTTGTTCTAGTAAGCTTCTTAAATAAACTCATGAATAAGCGTTTAATTAAACTGTT TGCTCAAACACACCTTTATAGCTTATTTAAAGGTCATATTACAAAATAAGCCTTCAAGCCAAGCCTTAAAGAGATTCCTG TATCAAGTAAATAGGTTAGGCTTTGTTAGACTGTATATATGTATGAGTACATGATAGTGGTGTACTTATGGTTATAGAGT ATTTCACTCTCTTGTAACTGATTGATTAGCTAGTTTATCCTCTTAGGCTTTTTGTTAAGTGTTGGTTAGCATCATGTATA AAGCTTCGAAGTGCTCTGTTATTGTAATCTGAAATCATTTTCACTCAAATTTACAGATTTCTCTCTCACTCTAGTTATCA AACAGGGCTTAGACGGAAATGGGCAGTATAAAGTCCATTTTGACCAATTTTCATCCTTAAAGACCTTCCTCTTTATAACA GTGTTTTGACTTTCATTTTCATATTCTTGTTTCCCATCTGGAACATGAAGTCGAGCATAAATCTGTAGATACAGTGATAT ACATTGCCTTTACTATTAATACAATCACATAACCTGAACTCCAGAAACCTTCCCATTGCCTTCTCCTACTATACTAAAGC AAAAGACACACTGAAAGTTTGAATTGCATTTTTCACAGCCTTAACATCAATATCAATCAACTTCCCTGTCTTGGATGATA TTACAATGCATTTCTTCTCTTCAGCCAGTGGAACAAACTTGTTACCCTTCTCTTCAGAGCCAAATAGTGCAATACTGCAT AAAAAGAGAAACAATTTTATTGGAGTTATGTGGCTGTTGTACTTAAACCATTTTTTCCTTCACAGATAAATAAAGACACC TTTAAGGGAACCATTATAGTTTATGTGAATGATAAAAGTACCTTGGCTTGTCACGTGCATTTGCAAGCTGAATGGCAGCT GTATTGGTGGCTATAACTCCAGCTGAGTCGTTAATAAGAGCAGCCATCTAAATCATATAACCAGAGAATAAATCCCATAA GTATTGTATGGAGACCATATATGCTCAAAACTCAAGAGCCTATTGCTCTGCCCCTTATTTCTGTCTCTCCCCTTCTTTTC TTTTCCCTTTATTCCAGCAGCTTATTTAGCTATCTATTCATTCATCATTTCACAGTTCAATGTTTTCACATTTTGCAACC ATCTGGATTTTCTTCACTGTTTGTTGCTCGCAAAATAACTAGAAGATACTAGTACCTGTCCAGGGGTGGTGATGAAGATA ATGGAGGCTTCTTCTCCCACGATTTCCTCCACATTTTCCCTTTCTTTCTCATGTGGAATGACAAAAAGTGGTGTAAATCC CCTGTAAATCATTTTTTATCAGATAAACTATCATCACCAGAAAATCAAAGATAAGGAGAAAATGCATGATGAGCACTTAT TTAGTGAACATTCTTAAGCATGGTACCTTTTGACTTGGTGTACTGTTATAATTCTTATATGTCAAGAAACAAGTAGTAAC AAGTCAAAAGCTTACAGACTCTTTATCACATGGAGAATGCTTTAACTCATTCCATACCTTATAGACTCTGCAATATCAGC CCACACTTCAATGGGTAGCAAGCTATCAGGATCACCCGCAGACTGCATTGAGGCGTTTGAATCTGATTGTATCCCATGAA TCACAATATATTTTCCTTTTTTTACACCTGCTTTTGTGTATTTTTGCTCTACAACCTCCTTCAGCTTCCTTGAAATTGAC ACCCTAAGTGGCAGCACAGGTTCCCTTGGAATGCTTCGAAATGGTCTTCCTAGCCAGTCAACCATCTGATGATACCTAGT CCAGCAAACTCATGACAAAAAGATCAATTCAATTAAAGAAAAATTTCAGGAAAATCTTCCTAATTTAAGCGTAAATCATT TGTGTTCTACTATGAGCTCACATATGATATCCTCCCTCTGAAAGATTTAGAGCATCTGGTGTGAATGTTTCTGATAAAAA TAGTCCTGCTCCTGCAGCATTCACATTTGGGTAGATATAGCTAACTCTGTCTCTGGCAGTGGTCATAAACAAAAATGCTG CATGGCCTAGGCCTGCCAATTTGGTACTTAAGACCATGTCATAATACCTATTCTGCAAGTATAGTGCAGCAATGCATCAG TATCTAAACCTGTATAGGAGAACTTCAAGTATATGTAAGTTAGGAAGTAGCAAGCAAAAGCTGGCAGAATTTTCAGTTTG GTTGCAACAAGCAGCATTGCAATGCCTAACATTGTAATAAGCCCCAGCAGTTGCAAATTTCATTACAATTGAGTTAGAAA AATGTATATTCTTAAGCTTCTTCATGTCAGGGAAGCCTCTAAACCCTTGAAAGATCCATAATATTTTCAGAGTTGCATGA CATGCATAATGTTCTCTACAAATAGTGTTTGACCTGCATATAGAACGGTGCCATCAATTTTCTACAATTTGGATCAACCC TCATTGATGTGATTAATTACTTTAAAACTCACGTTAAGGTGTGCATGTTTGAAAATCTATCTATAATTGATTCTAAAGTT AAAATAAATTTTCGAGTACCGTAATTGATTGTGAGGAAAGAAAAATTGATCCAAACATGTTTGTTCTGTATATAAAGGAT TAAAAGTAGCTTTAGACAAAACATCTAGAAAATATGGTGGCCAACCTTTAGAACTCCAACCATATCAGTATACTCTGCTG GCTCTGGAAAATCATTATCAAGGTCATAAGCATTCGCCCACCTCACATTCTTATTCAACTCAAACGTCTGCTTCCCCCTC TCGCCCGCCACCACATCAATCTGAACCCCCGGGTACCTGTCCTTAATCAACTGAATAACCGGAAAGAACAAGAGGCTCTC ATAAACACCACCACCGATCACACAGCAGCACCTCCTCACATCTCCCCTCACTTTCAAGCCCAAGGAAGCTATCTCCACTG AATATCCAGCAGGGAATTTCAAGTACCCGTATGGACTGTCCGGGTTATCCGGCGGCCTCGGATCCTCGTCCTGCTTACCA TCTGCAAACAAGGACCCATACTCCAACTCAGGGTCTTCCCCCTCATCAAATGGGTCAAGCCAAGGGTTCTTCTTCTTCAA ATTGACCTCAACATTTCTTCTCCTAGTAGTAGAGTTATGGAATGGATAGTCTAATGAACCCAATAATGAAACATGTGTTT GATGACATGATGGAATGGAAGGTAAAGATGAGAAAGCTTTTGGACTTGGCACTATATAGTAAGCTGCAGCCATTGAATTT TTCTAAGTTGCTTCCTTTTTTGCCTTGCTTGCATGATGATACATTACAAACACATTAGTAGATTACAACCAGTTTGAATG TGTGGAAAAGCGTTGGATAAGTGGGTCCTATCACTCCTCCTTATGTGTAGTTCACTAGTTCAGCTTATTATAATCAATTT ATCATCAATCTTCTTCTTCTACTAAAAAACGACAACCATAGTTGCCGTTTTGGCAACCCTCAAAAGAACCAAAACGGCGG CGTTGGACAGCATCACACGTGCCAATCCAACCAGAATAGAAACAACCTATTCCTCTTGAGCTCCGACAAAAATGTTTGAC GTCGATAATTTCTCTCTCCTACGTTTCACTCCCTCATTGGTCGACCAAAAACTTTCATTTTTCTCTCTCTACACCACCCT CCTTTTGCTTTTTTTATTTATTTATAACTATCCAATACACATTTCACCATTTTGATGCCGTCAAATTCAGGATTTAGTCG CAGTTAAAGTTTTTCATCCCTCTGTTAAAGTGTATTGTGTCGGGATCGTGTATTGTGTGAGAATCAAACCCAATAACTCT TCTCACATACTCAGTCTGCGTTACCGACTTAACTACCCTTTGGGGACCCTCCTTTTGGTTTGATTCGTTGCTTTCTCTAC CAACTTCCCATCAGAATTTTCAATTTTCCCTTCACATAACGTTACCCATTTTTCCTCTTTCAAATTTTACCTTTCACTTT CTCACTCTTTTCCTTCAGCAACCCCTTTCAGCCACCATCACTCAACACTGAACACCACAGCAATTAAAGCTAGCTTCTAT CATTTTCAATTTTCACCCACTCAACAAAAATGGGTGAAAAACTCAAAATCTAGCTCAGTTTTCAGTGAAATGTAGCTGAA AAATCAAAAAACTCTCACTCTTTCTAGGGTTTTGCATTGGAAGTTCGAACTTTCAAACCAAGTCAAGTTGGAAAAAAAAT CACTTTCTTTAATCGATTCTGGTGAGAAAGCATTGACCTGAGAGGTTTGGAATGTCGGGCCCACCCAGAGTTCGATCCAT GAACGTGGCCGTCGGCGACCATGAGGCGCGCCCGGTGCTGGTCCCGGCTTGCAACAAGGCTCGGCCTGCCGCCGTCGATG GGCGGAAGCCGGTGAAGAAATCGGTGCTGGAGACGGAGAAGGAGAAGAAGCCGGTGGCGCATCCGAACCCGCCGCAGCGT GTGTTGGTGTCGCCGGTGGTTTCGAGGCGGCAGGATCATCATCACCTTGCTGTGCTGAAGAACCTGTCGATGAGTGCTTC GTGCTCCTCGGATGCGTCGTCTACGGATTCTTCCACGCAGAGCAGTGGCGCGTCGTCGAGCGGGAAGGTGGCTCGGCGCG TGAGGAAGAAGCAGGCTGGTGCCAGGACGGAGAAGGTGAGCGCTGACAATGTGGCCGTGGCGGCTTCATCTGTTGACGCA GATTCAACTGATGGCTTAGAGAGCAAGAAAAGGTGTGCTTGGGTTACAGCGAATACAGGTATCTTGATTCCTTCTTGATC CTGATTTGCTTAATGTGTTGTGAGTTGTGAGTTTTGTGACCATTGATACTATTGGTTTGAGGTATTTGCGCGATTTTTGG AAACAACTGAGATGGATAAGTGTTTACTATGCCACCCCTTTGTATGGATATATGGAGAGTGAAGAGAATGAATGTGCCAA AAGCTTAACATACTTGCAAAGTTATAATTGAATGCAATGTAGGTAATAATGAACTTCAGGAAAGGTAAGCAAGCACTAAG TTTAGGAGAAATTTCCAGGTACTTAGCTAGTTTTGGATATCTGATGGAGGGTGGAGTGGAAAAGAAGTGAAGCGGAATGG ACTTTAATAAAGTAACAGGAACAGAATGAAGTGAATGTAACGTATTGTTTGGATTCTTTTATAATGGAATGAAGGAAAAG GCTTGTTTTATTCCATATCCTGAATTAGAGGATAGGAAAATGTAAGATATTAGATAGAAGAGATTGAATGCATTTTATCA TGTTCCATTCCACTTCAACTCATTTTAAACAATCCTGACAATGGAACTAGTACCTGTTTGGATGCAAACAAAGAGCATTT ATTGAAGCTAATTTAGGCATTCTCTAGTAGATATGCTCCAATAAGCTTGAATCGAAATGGGATCCTATTATAATTCAATT CCATTTCAATTTATTCTATCCCTTTATTTCAATTTTAATGTAGTTAGTAAGCCACCTAGTCAATTAGCAGTTTAGTAAGT TAACTGGGCATTTTACATGGAGATCATGTGGAATTTTGTCCTCAGAAGAATGGTAGACGATATTTAGGCAGGCAGCTAGT TACATTTTCAAACTGATGACAGCTTGCTTATTGAGATATATTTTTAATTTTGATTGGTTCATTTGGTTGGAAGCCTTGAA TAATATCAGAGTTCGTTCCATGTCTTGCGTTCTTAGGTACTATAGTAACATATATTTACCAATTAATATTTCATATCAGT CACACTGTGTGTGATCACTCGATTGATTGAATGCGTATTCTCTGTTTGTGTGAATCGTGTCAATTAAAAATTATGACTCA TGAGCAGGTTCTCAAGATACACCTATCATTGCTCTCTCATTTTGTTTTAAAAAGCAAAGGATAATTTTAGTGTTAATATA TACTAATTGGAATTCCAAACCTATCAAGTTTGGCATCGGTGTAGTTGGACAATGAATGATAGTTCCATGTTCATACACAA TTCGCCCCCCACATGAAATTTTCTATTCATGACTGTCCACAGTGGTGAGTTAAAGGTTGCAACTTATGAAATGGTTTGAG GTTGCTATTGACATCCTGATCAAGGGTTGTAGTCATTTGTATCCTTGTGTAACTCGAGGATGCTCAACCTTTTTTTACCA CTAGCTTGGCAGACTCATATATGTGGTAAAGGAATTGGGACAGTATGTCACTTCAAGTTCATAATAGTAGTCATATCCTT GTCATACCCATATACGACACTTCAGAACTCCTCGCTGCATTTGCAACTTTTTACTTTATCTTTTAAACTTAAACCAATAA GATGGGAATACCACACCCATTACATAATTTCTAGCATTTTATTATGACTATATTGACCCATGCTCACTTTTACAACATTA TAACATGATGAGTGCTGGCAACACACTTGTTTGAACACATCATATGATTGCTCTATTTTTAAAAATGTCAACACATTTCT CACTTATTAAAAGTGTGTTGACTTTGAAAAAATATACCAATCAAATGGAGTGTGTTGGTAGCATTTCTCTTAAAACATTC ACACTCTTTTGATTTAAGATTTTTGTTTTTTGTTGAGTAAATCCTCAATGCATTGCATTATGATTTGTAGTCATATCATG TCTTATAATTTGAAAATTTATCCTATCCAAATATTCATGTCATACGTATTCATGTTACATGTTGTATTGTTGCTTCCTGT TTATAGGGAGCACAGCTATTTGGCAGTTAGTATAGTTGACTTGGCTTGGGATTCACAAAAGACATGCAAACCATATAGCA TGAATACACCATTTTGTTGCTATGCCTATTCACCTGCATGTTGCACACTTGTCCAACATGAAATTTCACTTTTATGATCC GACATGTATCTATAATTGTCCAATTAACAAAAACATTTTCTTTGGCTTGGACGTAGAAGGATATGTCATGACATTAGAAT TTGAAAAACAAAATTGCTGTACTTGTACTTATACATGCATCTATTATGATAAGCTCATTTAGGGGTTTTTATTTTATTTT GCAAAATGTCAATAGACATGATGCTCTATTGTTTTCTGAAGGGGCTTATGAAATAGCAAGTATTGTCACAGATGACATAT ATCAAGATATTAGCCTCTTCTTGTTACAAAAAAAAAAAACAGAAGTGGTGGACATGTATTCAAAATATAATATTTGGTGC GGTGGAATAGTTAGTTTATTTCCCGTTTTGTCTTGTCATTTTGCTAAAATGAAGTCTGTTAAAGGTAGTACGGTACTCTA GCCTGTTAGCATTACTAATTTTCATTTCATCCTTCAATCTCAGCCATCTTAGGTGAATTTTCATTACAGCCATTCTTTCC AAATATCAAATATGCATTGGTTTTCATGATCTAAATTCTAATACCTATAAGCCTAGAGTGGGAGGATAAATAAAATGTTA AGTCCTTGGGTTTTATCCGGGGAAAATCCATTTCTTAAACATTATAATTGCAAATTTCTTTTTCGTTATTTCTAACTTTT ACTCATTCTCTTCAGAACCATGCTATATTGCTTTTCATGACGAAGAGTGGGGAGTTCCTGTTCATGATGACAAGTATGTG GGTTTGTTCTGGCATTAGCACAATTTTCTGTTTTGTTTTCAGTTTCCAGGTATAAACTGTCTCAATGACGGAATTTGGTT TTTTTGCAGGAAACTATTTGAGTTGCTCAGCTTCTCTGGAGCCTTGGCTGAACTTACGTGGCCTACCATTCTTAGCAAAA GGCAGTTATTTCGGTACTGAATTACTGATATATTTTTTGTAAAATGTAATTATATGGTTGGCATGTTGCACATACACATC AGAGAAAGTTGCTCATTGAATAATTATCTCATTCTATTTCCTTTCATGTGCTTCTATTTTGCTTTTGATAGATTTAGAAG ACCTTTGTGTAGAAAATGCTCTAAAACCTAAAACTGTTTTGAGGGTTTTAGCTTTGGATTAACTGTTGTGACTTATCCAT GAACACAGGGAAGTCTTTTTGGATTTTGATCCAAATGTTGTTTCAAAAATGAATGAGAAGAAGATAGTTGCACCAGGGAA CTCTGCCTGCACGTTGCTATCAGAGCTGAGGTTGCGATCAATAATTGAAAATGCACGTCAAATGTGTAAGGTAATATACT TACACATCTTAATTTTCTAATCTTATATATAATATTATGGTAAAGTTCAATTCCAATGAAAAGCAGCCTGCCACTTGTAA GACATAGTAGATTAGCTTTGGATTCTCTAATCCACCAATTTTTCTATATCTAGAATCTAGTATATAGAAACCAGAGTGCT CTTTACTCAACATTGTTTGTTCTATTCTACTAAAACTCAATTGTTTGGGGATAGAGAGGGATTGATCCATGTGTAGAAGT TTCAATTTTAGTGCTTTGCTATGTTTTTTTAATCAAAAGGCTGTGCCAAGATAAATCAACCTATAACTTTCTAACTTCTC TGCTACCTACCATGGAAAGTATTGTGAGAAATGAAATAAACCTGCTTCCTGACCCACATATACATTATAAAAAAGAAGAC TAGGTTGAAAATACGCTCGTTCTCTGTTCAACATGTTTTAAGGGATGGGCATCATAAATTTTTCTTGGTTTATGACTGTC ATATAGCGAGGCTATTTATGTTTTCTTTATCTACATTTTTCTTTGTCCCCCATTGCATTGCAGGTAATTGAGGAGTTTGG GTCCTTTGACACATTTATTTGGAACTTTGTGAATAATAAGCCAATAGTCAGCCAGTTCCGGTACGCGCGCCAGGTGCCAG TCAAATCTCCGAAAGCAGAATTCATAAGTAAAGACCTTGTAAGGAGAGGATTCAGGAGCGTGGGACCAACAGTCATCTAT ACTTTTATGCAAGTAGCTGGTCTAACAAATGACCACCTTATCAGTTGCTTCAGATTCAAGGAGTGTACCTCCAATGCAGA AACAGTGAACAAAGAGAGCTCCCTCAACTCTAAGGTCAAAGAGAAGGCCAATGAGGAGGAGCCTAATGAGATGGGTCTGT TGCTAGCTGTGAACAAGTTGAACTTCACCTCTAAGTAGTTTCAGGACTTCGGTTAATGAATGGTCATGTGGTGGATTTCA GGGGAGGTGGGTAGGCTGTGGAATGTACAAATCCATACAGATTTGAATGCAATAGCCCGAAGGCAGTTGTATTTGTTTGA AAAGTAAAATGACCTTTGTCCTTCAAGTTCTCATGTATGAAAGATATGCTGAAATCGTTGCAGTTGTAGTTAGCCCTTCC ACTCCTCCTCGATCAGTTTCTTTTTCCTCGGAATCAATTCTGGAGCTTAGAAGCTTCTCACAGGATTGATTCTAGCTTTA GAATCAAATGTTGAATTTTCCAATATGCGTATAGTAGGTTTGATTTCACGTTGAAAACTAACATAATTGGCCTTTTTTAG AATCATTTATATTCCTAACATGGAAACCTACCAAGTCTCAAACATACTTATTTTATGCGGTCAAGAAATTGGTTCCCTTT AGGACTTCACCCTACGATTGGGGGACCAATTCAGGCCTCCCTTGAGGGGCTTTGTTTTCTTTAATCAAGTCTCCGGTAGA CCGTCAACTATGACCAGCATTGCCTACTTAGTCAGTGGTCCTCAATGTACTCTTTTTGAAGATTTGGTCTAATAGTGAAT AATATCTCAG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0349700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCGGGCCCACCCAGAGTTCGATCCATGAACGTGGCCGTCGGCGACCATGAGGCGCGCCCGGTGCTGGTCCCGGCTTG CAACAAGGCTCGGCCTGCCGCCGTCGATGGGCGGAAGCCGGTGAAGAAATCGGTGCTGGAGACGGAGAAGGAGAAGAAGC CGGTGGCGCATCCGAACCCGCCGCAGCGTGTGTTGGTGTCGCCGGTGGTTTCGAGGCGGCAGGATCATCATCACCTTGCT GTGCTGAAGAACCTGTCGATGAGTGCTTCGTGCTCCTCGGATGCGTCGTCTACGGATTCTTCCACGCAGAGCAGTGGCGC GTCGTCGAGCGGGAAGGTGGCTCGGCGCGTGAGGAAGAAGCAGGCTGGTGCCAGGACGGAGAAGGTGAGCGCTGACAATG TGGCCGTGGCGGCTTCATCTGTTGACGCAGATTCAACTGATGGCTTAGAGAGCAAGAAAAGGTGTGCTTGGGTTACAGCG AATACAGAACCATGCTATATTGCTTTTCATGACGAAGAGTGGGGAGTTCCTGTTCATGATGACAAGAAACTATTTGAGTT GCTCAGCTTCTCTGGAGCCTTGGCTGAACTTACGTGGCCTACCATTCTTAGCAAAAGGCAGTTATTTCGGGAAGTCTTTT TGGATTTTGATCCAAATGTTGTTTCAAAAATGAATGAGAAGAAGATAGTTGCACCAGGGAACTCTGCCTGCACGTTGCTA TCAGAGCTGAGGTTGCGATCAATAATTGAAAATGCACGTCAAATGTGTAAGGTAATTGAGGAGTTTGGGTCCTTTGACAC ATTTATTTGGAACTTTGTGAATAATAAGCCAATAGTCAGCCAGTTCCGGTACGCGCGCCAGGTGCCAGTCAAATCTCCGA AAGCAGAATTCATAAGTAAAGACCTTGTAAGGAGAGGATTCAGGAGCGTGGGACCAACAGTCATCTATACTTTTATGCAA GTAGCTGGTCTAACAAATGACCACCTTATCAGTTGCTTCAGATTCAAGGAGTGTACCTCCAATGCAGAAACAGTGAACAA AGAGAGCTCCCTCAACTCTAAGGTCAAAGAGAAGGCCAATGAGGAGGAGCCTAATGAGATGGGTCTGTTGCTAGCTGTGA ACAAGTTGAACTTCACCTCTAAGTAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0349700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGPPRVRSMNVAVGDHEARPVLVPACNKARPAAVDGRKPVKKSVLETEKEKKPVAHPNPPQRVLVSPVVSRRQDHHHLA VLKNLSMSASCSSDASSTDSSTQSSGASSSGKVARRVRKKQAGARTEKVSADNVAVAASSVDADSTDGLESKKRCAWVTA NTEPCYIAFHDEEWGVPVHDDKKLFELLSFSGALAELTWPTILSKRQLFREVFLDFDPNVVSKMNEKKIVAPGNSACTLL SELRLRSIIENARQMCKVIEEFGSFDTFIWNFVNNKPIVSQFRYARQVPVKSPKAEFISKDLVRRGFRSVGPTVIYTFMQ VAGLTNDHLISCFRFKECTSNAETVNKESSLNSKVKEKANEEEPNEMGLLLAVNKLNFTSK

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31116 View details on PTHR31116 Search for proteins/transripts with this domain View external data on PTHR31116	1	379	379	7.2E-209	–
PANTHER	PTHR31116:SF17 View details on PTHR31116:SF17 Search for proteins/transripts with this domain View external data on PTHR31116:SF17	1	379	379	7.2E-209	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	31	63	33	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	35	57	23	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	90	111	22	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	90	133	44	-	–
Gene3D	G3DSA:1.10.340.30 View details on G3DSA:1.10.340.30 Search for proteins/transripts with this domain View external data on G3DSA:1.10.340.30	152	339	188	4.3E-67	–
SUPERFAMILY	SSF48150 View details on SSF48150 Search for proteins/transripts with this domain View external data on SSF48150	153	338	186	5.65E-67	IPR011257 Show description in modal box View details on IPR011257 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03352 View details on PF03352 Search for proteins/transripts with this domain View external data on PF03352	160	334	175	5.7E-61	IPR005019 Show description in modal box View details on IPR005019 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003824 View details of GO:0003824 AmiGO InterPro QuickGO	Molecular function	Catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.	Subterm of View details of GO:0003674
GO:0006281 View details of GO:0006281 AmiGO InterPro QuickGO	Biological process	DNA repair	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.	Subterm of View details of GO:0006259 View details of GO:0006974
GO:0006284 View details of GO:0006284 AmiGO InterPro QuickGO	Biological process	Base-excision repair	In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.	Subterm of View details of GO:0006281
GO:0008725 View details of GO:0008725 AmiGO InterPro QuickGO	Molecular function	DNA-3-methyladenine glycosylase activity	Catalysis of the reaction: DNA containing 3-methyladenine + H2O = DNA with abasic site + 3-methyladenine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 3-methyladenine and the deoxyribose sugar to remove the 3-methyladenine, leaving an abasic site.	Subterm of View details of GO:0043733

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0349700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi3g1v0349700.1