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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0354800 |
| Transcript ID | LotjaGi3g1v0354800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G15930.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930; TrEMBL-Plants: tr|A0A0B2S008|A0A0B2S008_GLYSO Putative pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi3g1v0354800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73656340..73658604) extracted from Lotus japonicus Gifu genome v1.2.
TCCCTGTTTTGTTCCACATCTCACTTGTCTTTTCCTCTTCCAAGCTCGACACTTTCACTTTCGTGGTTCCTCAAGAGACT GATTACTAATGCTCCTGCTATTACTGCTAAGTGTTATTCTTCACACTGTGACCCTCATTGCTTTGGTGAAACTCCAATCT CTTTGCTTGAAAGATGCAAGTCCACGTACCAGCTAAAGCAAATTCACTCAAAGACAATCAAAATGGGTCTCTCTTCAGAC CCTGTGTTTGGAAATAAAGTTATAGCCTTCTGTTGTACCCAGGAATCAGGGGATGTTGACTATGCTCGCCAGGTGTTTGA CACAATCCCTCACCCAAGTGTCTTCATTTGGAATACCATGATCAAGGGCTATTCTAGGATAAGCTGTCCTAAGAGTGGAA TTTCTATGTATCTACTGATGTTGGCCCATAACATCAAGCCTGATAGTTTTACATTTCCATTCTTGTTGAAGGGCTTCACC AATGATATGGCTTTGAAGTTTGGGAAAGTGTTACTTGATCATGCAGTGAAACTTGGGCTTGATTCTAATTTGTTTGTTCA AAAGGCTTTCATACACTTGTTTTCCTTGTGCGGGCTAGTGGATCTGGCTCACAAAATTTTCAATATGGGTGATGCATGGG AAGTGGTAACCTGGAATGTAATGCTATCTGGATATAACAGAGTTAAGCTATTTGAGAAATCAAAGAAGCTTTTTTTTGAG ATGGAGAAGAAAGGTGTATCACCCAATTCAGTTACTTTAGTTTTGATCCTTTCAGCATGCTCCAAATTGAAGGATTTAGA TGGAGGCAATTACGTTTATAAGTATATCAAAGAAGGTATTGTTGAGCCTAATCTTGTAATGGAAAATGTCTTACTTGATA TGTTTGGAGCTTGTGGAGAAATGGATGCTGCAAAAGGTGTTTTTGACAATATGAAGACTCGAGATGTAATTTCTTGGACT TCCATTGTTAGCGGATTTGCCAATACCGGCCAAATTGATTTAGCACGGAAGTATTTTGATCAAATGCCTGAAAGAGATTA TGTTTCTTGGACTGCTATGATTGATGGCTACCTTAGAATGAACCATTTCAGAGAGGCTTTGGCACTTTTCCGTGAGATGC AGATGTCACATGTGAAACCAGATGAATTCACCATGGTTAGCATTCTAACAGCCTGTGCGCACCTGGGAGCACTTGAGCTA GGGGAATGGGTAAAGACTTACATTGACAAAAACAAGATTAATAATGACACTTTCATTGGGAGTGCTCTAATAGACATGTA CTTCAAATGTGGGAATGTTGAGAAAGCAAGAAAAACATTCAAGGAAATGCATCAGAAAGACAAATTTATCTGGACGGCGA TGATTGTTGGTCTCGCCATTAATGGTCATGGTGAAGAAGCTCTTACTATGTTTTCAAATATGATAGAATCTTCAATCACA CCAGATGATATAACTTATATTGGTGTCCTGAGTGCTTGCACACACGCCGGCATGGTAGAAAAAGGAAGAAAGTTTTTTGC TAGCATGACCATCCAACATGGAATTAAGCCTAATGTGACTCATTATGGATGCATGGTTGACCTACTTAGTAGAGCTGGGC ATTTAAAAGAAGCCCTTGATGTCATTTTGAATATGCCTGTGAAGCCAAATTCAATTGTTTGGGGATCTCTTCTTGGTGCT TGCAGAGTTCACAAAAATGTTGAACTCGCAGAAATGGCAGCTAAACAAATAATTGAGTTAGAGCCTGAAAATGGGTCTGT TTATGTCCTGTTATGTAACATATATGCTGCATGCAAGAGATGGGAAAACTTGCGTGAAGTCAGGACAATTATGATGGAGA GGGGAATTAAGAAAACACCAGGTTGCAGTTTGATGGAAATGAATGGCATTGTCTATGAGTTTGTTGCTGGGGACCAGTCA CATCCTCAGTCTAAAGAAATATATGCGAAGTTGGAAAACATGATGCAAGATTTGACAAATGCAGGGTACTCGCCTGATAC ATCAGAGGTTTTCCTTGATATAGGAGAAGAGGATAAGGAGACTGCACTTTTCCGGCATAGCGAGAAGTTGGCTATTGCCT ATGCCCTTATTAGTTCAGGACCTGGGGTTACCATAAGAATAGTGAAGAACCTTAGAATGTGTGTAGATTGTCACCAGATG GCAAAGCTGGTGTCAAAGGCTTACAATAGGGAACTAGTAGTTAGGGATAAAACCAGATTCCATCATTTCAGGCATGGTGT ATGTTCATGTAATAATTTCTGGTAA
CDS sequence (LotjaGi3g1v0354800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCTCTCTTCAGACCCTGTGTTTGGAAATAAAGTTATAGCCTTCTGTTGTACCCAGGAATCAGGGGATGTTGACTA TGCTCGCCAGGTGTTTGACACAATCCCTCACCCAAGTGTCTTCATTTGGAATACCATGATCAAGGGCTATTCTAGGATAA GCTGTCCTAAGAGTGGAATTTCTATGTATCTACTGATGTTGGCCCATAACATCAAGCCTGATAGTTTTACATTTCCATTC TTGTTGAAGGGCTTCACCAATGATATGGCTTTGAAGTTTGGGAAAGTGTTACTTGATCATGCAGTGAAACTTGGGCTTGA TTCTAATTTGTTTGTTCAAAAGGCTTTCATACACTTGTTTTCCTTGTGCGGGCTAGTGGATCTGGCTCACAAAATTTTCA ATATGGGTGATGCATGGGAAGTGGTAACCTGGAATGTAATGCTATCTGGATATAACAGAGTTAAGCTATTTGAGAAATCA AAGAAGCTTTTTTTTGAGATGGAGAAGAAAGGTGTATCACCCAATTCAGTTACTTTAGTTTTGATCCTTTCAGCATGCTC CAAATTGAAGGATTTAGATGGAGGCAATTACGTTTATAAGTATATCAAAGAAGGTATTGTTGAGCCTAATCTTGTAATGG AAAATGTCTTACTTGATATGTTTGGAGCTTGTGGAGAAATGGATGCTGCAAAAGGTGTTTTTGACAATATGAAGACTCGA GATGTAATTTCTTGGACTTCCATTGTTAGCGGATTTGCCAATACCGGCCAAATTGATTTAGCACGGAAGTATTTTGATCA AATGCCTGAAAGAGATTATGTTTCTTGGACTGCTATGATTGATGGCTACCTTAGAATGAACCATTTCAGAGAGGCTTTGG CACTTTTCCGTGAGATGCAGATGTCACATGTGAAACCAGATGAATTCACCATGGTTAGCATTCTAACAGCCTGTGCGCAC CTGGGAGCACTTGAGCTAGGGGAATGGGTAAAGACTTACATTGACAAAAACAAGATTAATAATGACACTTTCATTGGGAG TGCTCTAATAGACATGTACTTCAAATGTGGGAATGTTGAGAAAGCAAGAAAAACATTCAAGGAAATGCATCAGAAAGACA AATTTATCTGGACGGCGATGATTGTTGGTCTCGCCATTAATGGTCATGGTGAAGAAGCTCTTACTATGTTTTCAAATATG ATAGAATCTTCAATCACACCAGATGATATAACTTATATTGGTGTCCTGAGTGCTTGCACACACGCCGGCATGGTAGAAAA AGGAAGAAAGTTTTTTGCTAGCATGACCATCCAACATGGAATTAAGCCTAATGTGACTCATTATGGATGCATGGTTGACC TACTTAGTAGAGCTGGGCATTTAAAAGAAGCCCTTGATGTCATTTTGAATATGCCTGTGAAGCCAAATTCAATTGTTTGG GGATCTCTTCTTGGTGCTTGCAGAGTTCACAAAAATGTTGAACTCGCAGAAATGGCAGCTAAACAAATAATTGAGTTAGA GCCTGAAAATGGGTCTGTTTATGTCCTGTTATGTAACATATATGCTGCATGCAAGAGATGGGAAAACTTGCGTGAAGTCA GGACAATTATGATGGAGAGGGGAATTAAGAAAACACCAGGTTGCAGTTTGATGGAAATGAATGGCATTGTCTATGAGTTT GTTGCTGGGGACCAGTCACATCCTCAGTCTAAAGAAATATATGCGAAGTTGGAAAACATGATGCAAGATTTGACAAATGC AGGGTACTCGCCTGATACATCAGAGGTTTTCCTTGATATAGGAGAAGAGGATAAGGAGACTGCACTTTTCCGGCATAGCG AGAAGTTGGCTATTGCCTATGCCCTTATTAGTTCAGGACCTGGGGTTACCATAAGAATAGTGAAGAACCTTAGAATGTGT GTAGATTGTCACCAGATGGCAAAGCTGGTGTCAAAGGCTTACAATAGGGAACTAGTAGTTAGGGATAAAACCAGATTCCA TCATTTCAGGCATGGTGTATGTTCATGTAATAATTTCTGGTAA
Protein sequence (LotjaGi3g1v0354800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLSSDPVFGNKVIAFCCTQESGDVDYARQVFDTIPHPSVFIWNTMIKGYSRISCPKSGISMYLLMLAHNIKPDSFTFPF LLKGFTNDMALKFGKVLLDHAVKLGLDSNLFVQKAFIHLFSLCGLVDLAHKIFNMGDAWEVVTWNVMLSGYNRVKLFEKS KKLFFEMEKKGVSPNSVTLVLILSACSKLKDLDGGNYVYKYIKEGIVEPNLVMENVLLDMFGACGEMDAAKGVFDNMKTR DVISWTSIVSGFANTGQIDLARKYFDQMPERDYVSWTAMIDGYLRMNHFREALALFREMQMSHVKPDEFTMVSILTACAH LGALELGEWVKTYIDKNKINNDTFIGSALIDMYFKCGNVEKARKTFKEMHQKDKFIWTAMIVGLAINGHGEEALTMFSNM IESSITPDDITYIGVLSACTHAGMVEKGRKFFASMTIQHGIKPNVTHYGCMVDLLSRAGHLKEALDVILNMPVKPNSIVW GSLLGACRVHKNVELAEMAAKQIIELEPENGSVYVLLCNIYAACKRWENLREVRTIMMERGIKKTPGCSLMEMNGIVYEF VAGDQSHPQSKEIYAKLENMMQDLTNAGYSPDTSEVFLDIGEEDKETALFRHSEKLAIAYALISSGPGVTIRIVKNLRMC VDCHQMAKLVSKAYNRELVVRDKTRFHHFRHGVCSCNNFW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 95 | 95 | 2.6E-11 | ||
| ProSiteProfiles | 6 | 38 | 33 | 5.097 | ||
| PANTHER | 13 | 94 | 82 | 1.4E-113 | – | |
| Pfam | 38 | 86 | 49 | 7.5E-8 | ||
| ProSiteProfiles | 39 | 73 | 35 | 9.591 | ||
| TIGRFAM | 42 | 75 | 34 | 9.8E-6 | ||
| ProSiteProfiles | 74 | 108 | 35 | 5.371 | ||
| PANTHER | 100 | 205 | 106 | 1.4E-113 | – | |
| Gene3D | 109 | 217 | 109 | 3.5E-18 | ||
| ProSiteProfiles | 140 | 174 | 35 | 12.167 | ||
| Pfam | 141 | 187 | 47 | 1.2E-10 | ||
| TIGRFAM | 142 | 175 | 34 | 2.9E-8 | ||
| ProSiteProfiles | 175 | 209 | 35 | 7.169 | ||
| ProSiteProfiles | 210 | 240 | 31 | 7.662 | ||
| PANTHER | 213 | 269 | 57 | 1.4E-113 | – | |
| Pfam | 215 | 241 | 27 | 0.041 | ||
| Gene3D | 218 | 329 | 112 | 7.0E-30 | ||
| ProSiteProfiles | 241 | 271 | 31 | 9.832 | ||
| TIGRFAM | 243 | 273 | 31 | 2.7E-5 | ||
| SUPERFAMILY | 254 | 528 | 275 | 2.38E-7 | ||
| PANTHER | 258 | 328 | 71 | 1.4E-113 | – | |
| ProSiteProfiles | 272 | 306 | 35 | 12.134 | ||
| Pfam | 272 | 319 | 48 | 3.6E-12 | ||
| TIGRFAM | 274 | 308 | 35 | 7.5E-9 | ||
| ProSiteProfiles | 307 | 341 | 35 | 5.404 | ||
| PANTHER | 327 | 538 | 212 | 1.4E-113 | – | |
| Gene3D | 330 | 437 | 108 | 7.4E-25 | ||
| ProSiteProfiles | 342 | 372 | 31 | 8.966 | ||
| Pfam | 347 | 372 | 26 | 7.6E-5 | ||
| TIGRFAM | 348 | 372 | 25 | 3.7E-5 | ||
| Pfam | 373 | 419 | 47 | 2.3E-8 | ||
| ProSiteProfiles | 373 | 407 | 35 | 10.369 | ||
| TIGRFAM | 376 | 408 | 33 | 8.5E-6 | ||
| ProSiteProfiles | 408 | 443 | 36 | 9.032 | ||
| TIGRFAM | 410 | 445 | 36 | 4.0E-5 | ||
| Gene3D | 438 | 613 | 176 | 2.8E-16 | ||
| ProSiteProfiles | 444 | 474 | 31 | 7.618 | ||
| Pfam | 447 | 471 | 25 | 0.095 | ||
| ProSiteProfiles | 476 | 506 | 31 | 5.086 | ||
| ProSiteProfiles | 510 | 544 | 35 | 7.333 | ||
| Pfam | 546 | 670 | 125 | 2.7E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0354800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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