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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0357800 |
Transcript ID | LotjaGi3g1v0357800.13 |
Related isoforms 12 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ATP-dependent RNA helicase; TAIR: AT5G11170.2 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr|A0A072UHT1|A0A072UHT1_MEDTR DEAD-box ATP-dependent RNA helicase-like protein; Found in the gene: LotjaGi3g1v0357800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74000482..74004064) extracted from Lotus japonicus Gifu genome v1.2.
TTAAAAGGATCTGGCAGATCATATATACTTACTGAGGATTCGTCCACTACAATTTTGTTTGCTTCTTCATCAGTGCAACA TGAATGCATCCCTCAAGCAATTTTAGGAATGGATGTTATCTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTGTTTG TTCTGTCATCACTTCAGCAAATTGATCCTGTTCCTGGTCAAGTTGCGGCCCTTGTTCTTTGCCACACGAGGGAACTAGCT TATCAGGTATGTCTACAATAATTTAAATGCAATATATCTGAACTGTTTTGCTAGAGTGATTTGTCTGATAAAAGTTTCCT AATTTGTACAGATTTGCCATGAATTTGAGAGGTTCAGCACATATCTTCCTGATATAAAAGTTGCTGTTTTCTATGGAGGT GTCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCCCATATTGTTGTTGGAACACCTGGGAGGATTCTTGC TCTGACTAGAGACAAGGACCTTGGTTTGAAGAATGTGAGGCATTTTATACTTGATGAGTGCGACAAGATGCTTGAATCAC TTGGTCTCTTTCTTCCTCCTACTCGTTGTAGTTATTTTTTTTTGTGTGTGTGTCTTGTTTTGAACTTGCGAATTGCGATA TATTTGATATTTTTTTCTGCTCTCCTTATTTATCACCACATCTGCTATTTTGCTTTTGCAGATATGAGAAGAGATGTGCA AGAGATTTTCAAATTGACTCCCCATGATAAACAAGTGATGATGTTTTCAGCTACACTCAGCAAAGAGATACGACCTGTTT GCAAGAAGTTTATGCAAGATGTAATATTTTATTTATGTGGTGATTTTTTGACGGCATATGGTGGATGGATTTCATTGTTT CTCGTACTGCTCATATTGTTATTATTGTTGCATCACTTTGTTTCCCCTTTTTGTTAAATGCAAACAAAAGTATTACTTTT TTAAGCACTTTTGCTCGTTTTTTGTGCTTATATTTGTGAAACGTTTTGAATTTTTGGTATTTTCTATAGAAGTTATTACA AATATTATCTTGAAAATTATATTTGTTTCTTCAACGATATTATCTTCATCATTTTATTGAAGATCTTTTTTCTTTCAGCC CATGGAAATATATGTTGATGATGAGGCCAAGTTGACCCTCCATGGTCTTGTTCAGGTGTGTTTTGTTGACTTCGTTTTTC CTTCTCTAATTGATAATTTTTTTTTAATCTGTATATTAACTAATTTCTACTCATTTGCCCCCTTTTTCAGCACTATATCA AATTGCAAGATTCAGAGAAGAATCGTAAGTTGAATGATCTTCTTGATGCTCTTGACTTCAACCAAGTTGTTATTTTTGTC AAGAGTGTAAGCAGAGCAGCAGAATTGAACAAGTTGCTTGTGGAGTGTAATTTCCCGTCAATCTGCATACATTCTGGAAT GTCACAGGAAGAAAGGTACAAGCTCTTCTGCTAACTATCACTTTCAGGCTTTAAGAATTTTGTGCAGACATTTTGTCTTG TTCTTATTTTATATTTTGTATCTTTCTTTGCTGGATATTACTCTGGTTAAAGGCAGGGGGTTGCTTATCATTTATTTTTA ACATGAGTAACATGATGTTACAGCCAAAATCTTCACTATTCTTGGATCCTTTGATGTGAGTCTTTTGGGTACTTTTGATA GCTTGATCTAAGTATAAGGTTGCATACTTGTGATGGGTGAGATGAACTTGCAGCATCAATTGAAGGGAGGGGAAGGAATT AGGAAAAAGATGACTGAAGATTTCAATTATGACTTCATGTTCTTTGGTTTTTAAATCTCTTGTGATATTTTACCAGCAAA GATCTGTCAAAATGTGCCTGTCCTTTGCTGAGTGAAATATTGGTCTAGGATCACAAAGTTCCTAAACAGAGTGAGATGGG CCAATTTCGTATTACTTTCTGGCTGTAATCAGGCCAGAAAAGGGCTGAACTTGCATTTAATTTGGATCATTGTATTCATA TATAGCTGCATGGCTTTTTCCTGCAGGGATATAAACTTAATCTAGTAATTGCAACCTTGTAATCATAGTTATCAATAGCG GCGCGATGTCGCGTCGCAGCCCTTCCCCGCGACTCTGAATCACTCTGAATCAATCGCGTCATAGAACGCTGTCGCGCTGC GAATCGCGGCAAATTGCGGTGCTCCAGGTTGAAGATGGGTCGGATCCAAGGAAAATCCCCAAATTGCCCTTAAATTTTAA ATTTAGGTTAAAATTTGAGGGTACTTTTGGGATTTCACTCTTTGTAAGTGAAACGGCGCGTTTCACTCGTCTTCTTCAAC GCGTTTCTTCTCTTCACGCGTTTCCTCTGCAATCTCCAGTGCGACTTCCTTCAGCTCAGCCACCTTCGACCAGAAGTCCA GAACCCATGGCCACAACGCAATCTGACAAGCACCGTCCAGGCTCCGGCGACCACCACCCCTGTTTCCCTTGGGCTTCTGT TCTGTTCTGAGTTGCTCTGTTTTTTATCTTCTTTTCCTTTCTTTTCCTTTTTATTTATTATTCTGTTCTCAAAACATACT TCTCCAGTTCTTCTCCTCCAGTAGTCCTCTCTTCTCTATCATTTCATCATGTTATGAATTTGAAGTTATATTTATCACTT CTTAGTAATTATATGTATATATTAATTATATAATATTATATGTGAAAAATCAAAATAGCGGTCATCCCGCTATCCCACTT TTGGGGTTGGCCGCTACGCGTCGCGATCCGGGATTGACTACTATGCTTGTAATATCATATCATAATAAAATTGATTTTGC CCGTTTCAGGTTGAAACGATACAAAGGTTTCAAAGAGGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGG GGATTGATATAGAACGTGTTAATATAGTCATAAACTATGACATGCCTGATTCTGCTGATACTTATCTACACAGGGTAATT GCTTGATCCATATCATAAGATTTATTAATATTTTTTATTTCAAAAAGTAGTTTCTGGCATGCTGTTTTGGTATGCTCGAA TGCTTGTAAATCACCTCTGCCCCTCATATCTTTAAATGCTTTATTGACATGTGAATTGGTAGGTTGGAAGAGCTGGCAGA TTTGGGACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTTCCGGTGATTCTGAAGTTCTTAATCAGGTGAGGCCCAGTTT CATGGATGTTTAGGAAGAGCTTTTCTTTTGTTATGTCAGTTGAGAAAATGGAGGAATACAATGTCCTTTTCTGCATACGA TGCATTCCTTAAAATGAAGTCTTATTTCAGGTGCAATCTCGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGA CACTGCCACATATAGTAAGAACTTTCTCCGTGCCTACTTGTTTATGATTCATTCCATTTCATTCTGCTTTATTTTGGTAT GCCTCATTCAGTTTGATTCCACTTTCCACTCATTCAGTTTGATTCCACTTTCCATTAGATGTTAAAACTTAGTCAAACGA CCTCCGAGGTTTTTCCAGGTCATAAATGTAACATCTTTGTCATGTTCTGCAGTGCCAAACTGA
CDS sequence (LotjaGi3g1v0357800.13) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTTATCTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTGTTTGTTCTGTCATCACTTCAGCAAATTGATCC TGTTCCTGGTCAAGTTGCGGCCCTTGTTCTTTGCCACACGAGGGAACTAGCTTATCAGATTTGCCATGAATTTGAGAGGT TCAGCACATATCTTCCTGATATAAAAGTTGCTGTTTTCTATGGAGGTGTCAATATCAAGGTTCACAAAGAATTGCTCAAG AATGAATGTCCCCATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGACTAGAGACAAGGACCTTGGTTTGAAGAA TGTGAGGCATTTTATACTTGATGAGTGCGACAAGATGCTTGAATCACTTGATATGAGAAGAGATGTGCAAGAGATTTTCA AATTGACTCCCCATGATAAACAAGTGATGATGTTTTCAGCTACACTCAGCAAAGAGATACGACCTGTTTGCAAGAAGTTT ATGCAAGATCCCATGGAAATATATGTTGATGATGAGGCCAAGTTGACCCTCCATGGTCTTGTTCAGCACTATATCAAATT GCAAGATTCAGAGAAGAATCGTAAGTTGAATGATCTTCTTGATGCTCTTGACTTCAACCAAGTTGTTATTTTTGTCAAGA GTGTAAGCAGAGCAGCAGAATTGAACAAGTTGCTTGTGGAGTGTAATTTCCCGTCAATCTGCATACATTCTGGAATGTCA CAGGAAGAAAGGTTGAAACGATACAAAGGTTTCAAAGAGGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAG GGGGATTGATATAGAACGTGTTAATATAGTCATAAACTATGACATGCCTGATTCTGCTGATACTTATCTACACAGGGTTG GAAGAGCTGGCAGATTTGGGACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTTCCGGTGATTCTGAAGTTCTTAATCAG GTGCAATCTCGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTGCCACATATATGCCAAACTGA
Protein sequence (LotjaGi3g1v0357800.13) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKELLK NECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKF MQDPMEIYVDDEAKLTLHGLVQHYIKLQDSEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS QEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSSGDSEVLNQ VQSRFEVDIKELPEQIDTATYMPN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 329 | 329 | 2.8E-203 | – | |
CDD | 1 | 169 | 169 | 5.551E-126 | – | |
Gene3D | 1 | 169 | 169 | 4.8E-52 | – | |
PANTHER | 1 | 329 | 329 | 2.8E-203 | – | |
ProSiteProfiles | 1 | 167 | 167 | 24.87 | ||
SMART | 1 | 183 | 183 | 6.8E-38 | ||
Pfam | 2 | 153 | 152 | 2.8E-33 | ||
SUPERFAMILY | 32 | 317 | 286 | 2.36E-69 | ||
CDD | 180 | 309 | 130 | 4.36753E-58 | – | |
Gene3D | 181 | 344 | 164 | 1.3E-53 | – | |
Pfam | 193 | 300 | 108 | 2.8E-28 | ||
ProSiteProfiles | 195 | 340 | 146 | 22.664 | ||
SMART | 219 | 300 | 82 | 3.8E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0357800.13, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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