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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0357800 |
| Transcript ID | LotjaGi3g1v0357800.2 |
| Related isoforms 12 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr|A0A0R0J4W7|A0A0R0J4W7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0357800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73998358..74004064) extracted from Lotus japonicus Gifu genome v1.2.
AGAGCCCTCAACAGCAAAATTGAAAGGGCAATTTGGTCAATTCAGTGCATCCACTATATATTCCCATTCACACTTGTGTG TTCTCAGTGTTGTTTCATCTTCAAAACCCACCCAGAAGCAGAAGCAGATCTAGGGTTTAGTTCGAAGAAGTTCGCGTCTT CAAAGGTCAGCTACTATTACCTTTCTTCCCCCTTTACCCAATTCAATTCAATTCAATCTCTGTAGATCTCATCAATTGAA ACTGAAAAACCCTAACCCTAATCTACAGAGGTAGCATGGGTGAATTGAAAGACACTGAGGCTTACGAGGAAGAACTCATC GATTATGAGGAAGAAGATGAAAAAGCCCCTGATTCTGCCAAGCCCGCGGCTGAAACAGCCAAAAAGTTAGTTCCTTTCCC ATTTTTTCTATTGCGCTTATTGTTTTTTGTTTTGTAAATCTTAAATTGTCAATTATCATGGTTCTTTTGTTTTTTTATGT GCTTTGGGTTCAATAAATGGAGCATAACAGGAAAAAAGTTGCATGCTTGAAAGTGATTTATGTCCAATTTGGTTATTTAT TAGAGAAAAATGATTTTTTAGTGCAAAAACGTATTGGATTTAATCAGTGTTACTTTCTTGGTGAGCATATTGAGTCTATG AATTACCGGTTGTGCTATTGAGTTGTTGATTGAACCAGTTCAATTGGTATAACACGGAAAACTGTAGTGAAAATATTGTT CTGTATTTGATTAAAACAAGTTTATACATATAAAATATGCCTTTAGATTTTAAAGGGCAAGTCTGGAGCAATGAATTATG CCCATTGCTTGTTTCATATACACACAGGCTTGATTCTCAGTTGCCAGACTAAAATTACAATGGCTATCAAAATGTTTATA TTAAAAATCTAGTGGTAGCACAGTGGCTATCACCTATTGAATGGCCCAAGTGTGTGCTGAGTTCGATTCCTTTTGCTTGT GCATGCACATCTAGTAATTAATTTTTTTACCACATTCTCACACCTCATGTGCATGTAGAACTGGGCTGAGTGAACCTGAG TGGTCCATTCCCTGACCCAACTGGTCTAGTTCTTATAACACTGGATTTAACTGTTTCTTTATTTCATTTTATTAGGATTT GTCTAGACTACAAGTCACTGTGCATGTTATTAATAAATATGATTTGAGCACATGCCAGGGGCATATATTGCCAATTTAGA ATATAGCTAAAAAAATCATAATATGATAATGGTATAAAAACTCTTATTTTTAACAATTATAATTTGTGAATTATTAGATG AAGCCATAGGATTGCAATGTTTAATTTAAAATAGTTGTTTTATTTCTTCATTAGTCTTAACTCGTAAGGTTTTCTTGATA TGCTATATGTATATTAATTTTTGGCTATAAAACATACAACACAATCTCTTGGAAATGAATTAATAATTTTGATGTCAAGT TTTTAAGCAATGTTTTGAATTGTTAAACCCAAAACCCTAAATAGTATTTTTACTTTTGTGGTGCAGGGGTTATGTTGGTA TACATAGTTCGGGATTTCGCGACTTCCTGTTGAAACCAGAGCTTCTTCGAGCTATTGTAGATTCTGGATTTGAGCATCCT TCAGAAGGCAAGTTTCAGAATATCCTGTCATTATGTAACTTGGCATTGGCAGAGCATCATGTTTTGGCATTGATTTTTTT TCTCGTATACTATATCTGCCTGCTTATATGTGATCAGTCCTGATATTCTGTTGCCAATGCTATCAGTCCTGATATCTTGT ACTTTCTGTTTGTATTTTCAATTCATTGTACTATATGTTTTGAATTCATTTGAGCAATTGTTCAATGGATTCTTGGTGCT TTCTCCCTCTCTCTCTCTCTCTCACACACACACACACACAAAAGGGGTGAGTGGCTTGTTGATTGTTGTATGATTGAGTC TTATTATCACATTTGATCCACTAAAGAATTGATTAAGTGAAGATAAATTTTACCAATGAACATGTGTTCTCTTGCTCTTT TATCTCCTTCCTTGCCTTTATTATGATTCTCTTCTAATCTTTATTTTATTTTTCTGCATTGACCAGGTAATCACTACTAG CATATTATGAATACGTCACGAAAATTGGTTGGTAAACCTTTACATTAAAAGGATCTGGCAGATCATATATACTTACTGAG GATTCGTCCACTACAATTTTGTTTGCTTCTTCATCAGTGCAACATGAATGCATCCCTCAAGCAATTTTAGGAATGGATGT TATCTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTGTTTGTTCTGTCATCACTTCAGCAAATTGATCCTGTTCCTG GTCAAGTTGCGGCCCTTGTTCTTTGCCACACGAGGGAACTAGCTTATCAGGTATGTCTACAATAATTTAAATGCAATATA TCTGAACTGTTTTGCTAGAGTGATTTGTCTGATAAAAGTTTCCTAATTTGTACAGATTTGCCATGAATTTGAGAGGTTCA GCACATATCTTCCTGATATAAAAGTTGCTGTTTTCTATGGAGGTGTCAATATCAAGGTTCACAAAGAATTGCTCAAGAAT GAATGTCCCCATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGACTAGAGACAAGGACCTTGGTTTGAAGAATGT GAGGCATTTTATACTTGATGAGTGCGACAAGATGCTTGAATCACTTGGTCTCTTTCTTCCTCCTACTCGTTGTAGTTATT TTTTTTTGTGTGTGTGTCTTGTTTTGAACTTGCGAATTGCGATATATTTGATATTTTTTTCTGCTCTCCTTATTTATCAC CACATCTGCTATTTTGCTTTTGCAGATATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGATAAACAAGT GATGATGTTTTCAGCTACACTCAGCAAAGAGATACGACCTGTTTGCAAGAAGTTTATGCAAGATGTAATATTTTATTTAT GTGGTGATTTTTTGACGGCATATGGTGGATGGATTTCATTGTTTCTCGTACTGCTCATATTGTTATTATTGTTGCATCAC TTTGTTTCCCCTTTTTGTTAAATGCAAACAAAAGTATTACTTTTTTAAGCACTTTTGCTCGTTTTTTGTGCTTATATTTG TGAAACGTTTTGAATTTTTGGTATTTTCTATAGAAGTTATTACAAATATTATCTTGAAAATTATATTTGTTTCTTCAACG ATATTATCTTCATCATTTTATTGAAGATCTTTTTTCTTTCAGCCCATGGAAATATATGTTGATGATGAGGCCAAGTTGAC CCTCCATGGTCTTGTTCAGGTGTGTTTTGTTGACTTCGTTTTTCCTTCTCTAATTGATAATTTTTTTTTAATCTGTATAT TAACTAATTTCTACTCATTTGCCCCCTTTTTCAGCACTATATCAAATTGCAAGATTCAGAGAAGAATCGTAAGTTGAATG ATCTTCTTGATGCTCTTGACTTCAACCAAGTTGTTATTTTTGTCAAGAGTGTAAGCAGAGCAGCAGAATTGAACAAGTTG CTTGTGGAGTGTAATTTCCCGTCAATCTGCATACATTCTGGAATGTCACAGGAAGAAAGGTACAAGCTCTTCTGCTAACT ATCACTTTCAGGCTTTAAGAATTTTGTGCAGACATTTTGTCTTGTTCTTATTTTATATTTTGTATCTTTCTTTGCTGGAT ATTACTCTGGTTAAAGGCAGGGGGTTGCTTATCATTTATTTTTAACATGAGTAACATGATGTTACAGCCAAAATCTTCAC TATTCTTGGATCCTTTGATGTGAGTCTTTTGGGTACTTTTGATAGCTTGATCTAAGTATAAGGTTGCATACTTGTGATGG GTGAGATGAACTTGCAGCATCAATTGAAGGGAGGGGAAGGAATTAGGAAAAAGATGACTGAAGATTTCAATTATGACTTC ATGTTCTTTGGTTTTTAAATCTCTTGTGATATTTTACCAGCAAAGATCTGTCAAAATGTGCCTGTCCTTTGCTGAGTGAA ATATTGGTCTAGGATCACAAAGTTCCTAAACAGAGTGAGATGGGCCAATTTCGTATTACTTTCTGGCTGTAATCAGGCCA GAAAAGGGCTGAACTTGCATTTAATTTGGATCATTGTATTCATATATAGCTGCATGGCTTTTTCCTGCAGGGATATAAAC TTAATCTAGTAATTGCAACCTTGTAATCATAGTTATCAATAGCGGCGCGATGTCGCGTCGCAGCCCTTCCCCGCGACTCT GAATCACTCTGAATCAATCGCGTCATAGAACGCTGTCGCGCTGCGAATCGCGGCAAATTGCGGTGCTCCAGGTTGAAGAT GGGTCGGATCCAAGGAAAATCCCCAAATTGCCCTTAAATTTTAAATTTAGGTTAAAATTTGAGGGTACTTTTGGGATTTC ACTCTTTGTAAGTGAAACGGCGCGTTTCACTCGTCTTCTTCAACGCGTTTCTTCTCTTCACGCGTTTCCTCTGCAATCTC CAGTGCGACTTCCTTCAGCTCAGCCACCTTCGACCAGAAGTCCAGAACCCATGGCCACAACGCAATCTGACAAGCACCGT CCAGGCTCCGGCGACCACCACCCCTGTTTCCCTTGGGCTTCTGTTCTGTTCTGAGTTGCTCTGTTTTTTATCTTCTTTTC CTTTCTTTTCCTTTTTATTTATTATTCTGTTCTCAAAACATACTTCTCCAGTTCTTCTCCTCCAGTAGTCCTCTCTTCTC TATCATTTCATCATGTTATGAATTTGAAGTTATATTTATCACTTCTTAGTAATTATATGTATATATTAATTATATAATAT TATATGTGAAAAATCAAAATAGCGGTCATCCCGCTATCCCACTTTTGGGGTTGGCCGCTACGCGTCGCGATCCGGGATTG ACTACTATGCTTGTAATATCATATCATAATAAAATTGATTTTGCCCGTTTCAGGTTGAAACGATACAAAGGTTTCAAAGA GGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGGGGATTGATATAGAACGTGTTAATATAGTCATAAACT ATGACATGCCTGATTCTGCTGATACTTATCTACACAGGGTAATTGCTTGATCCATATCATAAGATTTATTAATATTTTTT ATTTCAAAAAGTAGTTTCTGGCATGCTGTTTTGGTATGCTCGAATGCTTGTAAATCACCTCTGCCCCTCATATCTTTAAA TGCTTTATTGACATGTGAATTGGTAGGTTGGAAGAGCTGGCAGATTTGGGACCAAGGGGCTTGCAATTACTTTTGTGTCT TCTTCCGGTGATTCTGAAGTTCTTAATCAGGTGAGGCCCAGTTTCATGGATGTTTAGGAAGAGCTTTTCTTTTGTTATGT CAGTTGAGAAAATGGAGGAATACAATGTCCTTTTCTGCATACGATGCATTCCTTAAAATGAAGTCTTATTTCAGGTGCAA TCTCGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTGCCACATATAGTAAGAACTTTCTCCGTGCCTA CTTGTTTATGATTCATTCCATTTCATTCTGCTTTATTTTGGTATGCCTCATTCAGTTTGATTCCACTTTCCACTCATTCA GTTTGATTCCACTTTCCATTAGATGTTAAAACTTAGTCAAACGACCTCCGAGGTTTTTCCAGGTCATAAATGTAACATCT TTGTCATGTTCTGCAGTGCCAAACTGA
CDS sequence (LotjaGi3g1v0357800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGAATTGAAAGACACTGAGGCTTACGAGGAAGAACTCATCGATTATGAGGAAGAAGATGAAAAAGCCCCTGATTC TGCCAAGCCCGCGGCTGAAACAGCCAAAAAGGGTTATGTTGGTATACATAGTTCGGGATTTCGCGACTTCCTGTTGAAAC CAGAGCTTCTTCGAGCTATTGTAGATTCTGGATTTGAGCATCCTTCAGAAGTGCAACATGAATGCATCCCTCAAGCAATT TTAGGAATGGATGTTATCTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTGTTTGTTCTGTCATCACTTCAGCAAAT TGATCCTGTTCCTGGTCAAGTTGCGGCCCTTGTTCTTTGCCACACGAGGGAACTAGCTTATCAGATTTGCCATGAATTTG AGAGGTTCAGCACATATCTTCCTGATATAAAAGTTGCTGTTTTCTATGGAGGTGTCAATATCAAGGTTCACAAAGAATTG CTCAAGAATGAATGTCCCCATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGACTAGAGACAAGGACCTTGGTTT GAAGAATGTGAGGCATTTTATACTTGATGAGTGCGACAAGATGCTTGAATCACTTGATATGAGAAGAGATGTGCAAGAGA TTTTCAAATTGACTCCCCATGATAAACAAGTGATGATGTTTTCAGCTACACTCAGCAAAGAGATACGACCTGTTTGCAAG AAGTTTATGCAAGATCCCATGGAAATATATGTTGATGATGAGGCCAAGTTGACCCTCCATGGTCTTGTTCAGCACTATAT CAAATTGCAAGATTCAGAGAAGAATCGTAAGTTGAATGATCTTCTTGATGCTCTTGACTTCAACCAAGTTGTTATTTTTG TCAAGAGTGTAAGCAGAGCAGCAGAATTGAACAAGTTGCTTGTGGAGTGTAATTTCCCGTCAATCTGCATACATTCTGGA ATGTCACAGGAAGAAAGGTTGAAACGATACAAAGGTTTCAAAGAGGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGT AGGAAGGGGGATTGATATAGAACGTGTTAATATAGTCATAAACTATGACATGCCTGATTCTGCTGATACTTATCTACACA GGGTTGGAAGAGCTGGCAGATTTGGGACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTTCCGGTGATTCTGAAGTTCTT AATCAGGTGCAATCTCGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTGCCACATATATGCCAAACTG A
Protein sequence (LotjaGi3g1v0357800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGELKDTEAYEEELIDYEEEDEKAPDSAKPAAETAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI LGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKEL LKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCK KFMQDPMEIYVDDEAKLTLHGLVQHYIKLQDSEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG MSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSSGDSEVL NQVQSRFEVDIKELPEQIDTATYMPN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 411 | 402 | 1.6E-231 | – | |
| PANTHER | 10 | 411 | 402 | 1.6E-231 | – | |
| Gene3D | 35 | 251 | 217 | 6.3E-65 | – | |
| CDD | 44 | 251 | 208 | 5.04137E-162 | – | |
| ProSiteProfiles | 45 | 73 | 29 | 9.665 | ||
| SMART | 64 | 265 | 202 | 9.1E-53 | ||
| Pfam | 70 | 235 | 166 | 5.2E-37 | ||
| ProSiteProfiles | 76 | 249 | 174 | 25.605 | ||
| SUPERFAMILY | 114 | 399 | 286 | 4.78E-69 | ||
| CDD | 262 | 391 | 130 | 8.3385E-58 | – | |
| Gene3D | 263 | 426 | 164 | 2.1E-53 | – | |
| Pfam | 275 | 382 | 108 | 4.2E-28 | ||
| ProSiteProfiles | 277 | 422 | 146 | 22.664 | ||
| SMART | 301 | 382 | 82 | 3.8E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0357800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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