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LotjaGi3g1v0357800.4

Overview

Field Value
Gene ID LotjaGi3g1v0357800
Transcript ID LotjaGi3g1v0357800.4
Related isoforms 12
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr|A0A0R0J4W7|A0A0R0J4W7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0357800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:73998443..74004503) extracted from Lotus japonicus Gifu genome v1.2.

AGTGTTGTTTCATCTTCAAAACCCACCCAGAAGCAGAAGCAGATCTAGGGTTTAGTTCGAAGAAGTTCGCGTCTTCAAAG GTCAGCTACTATTACCTTTCTTCCCCCTTTACCCAATTCAATTCAATTCAATCTCTGTAGATCTCATCAATTGAAACTGA AAAACCCTAACCCTAATCTACAGAGGTAGCATGGGTGAATTGAAAGACACTGAGGCTTACGAGGAAGAACTCATCGATTA TGAGGAAGAAGATGAAAAAGCCCCTGATTCTGCCAAGCCCGCGGCTGAAACAGCCAAAAAGTTAGTTCCTTTCCCATTTT TTCTATTGCGCTTATTGTTTTTTGTTTTGTAAATCTTAAATTGTCAATTATCATGGTTCTTTTGTTTTTTTATGTGCTTT GGGTTCAATAAATGGAGCATAACAGGAAAAAAGTTGCATGCTTGAAAGTGATTTATGTCCAATTTGGTTATTTATTAGAG AAAAATGATTTTTTAGTGCAAAAACGTATTGGATTTAATCAGTGTTACTTTCTTGGTGAGCATATTGAGTCTATGAATTA CCGGTTGTGCTATTGAGTTGTTGATTGAACCAGTTCAATTGGTATAACACGGAAAACTGTAGTGAAAATATTGTTCTGTA TTTGATTAAAACAAGTTTATACATATAAAATATGCCTTTAGATTTTAAAGGGCAAGTCTGGAGCAATGAATTATGCCCAT TGCTTGTTTCATATACACACAGGCTTGATTCTCAGTTGCCAGACTAAAATTACAATGGCTATCAAAATGTTTATATTAAA AATCTAGTGGTAGCACAGTGGCTATCACCTATTGAATGGCCCAAGTGTGTGCTGAGTTCGATTCCTTTTGCTTGTGCATG CACATCTAGTAATTAATTTTTTTACCACATTCTCACACCTCATGTGCATGTAGAACTGGGCTGAGTGAACCTGAGTGGTC CATTCCCTGACCCAACTGGTCTAGTTCTTATAACACTGGATTTAACTGTTTCTTTATTTCATTTTATTAGGATTTGTCTA GACTACAAGTCACTGTGCATGTTATTAATAAATATGATTTGAGCACATGCCAGGGGCATATATTGCCAATTTAGAATATA GCTAAAAAAATCATAATATGATAATGGTATAAAAACTCTTATTTTTAACAATTATAATTTGTGAATTATTAGATGAAGCC ATAGGATTGCAATGTTTAATTTAAAATAGTTGTTTTATTTCTTCATTAGTCTTAACTCGTAAGGTTTTCTTGATATGCTA TATGTATATTAATTTTTGGCTATAAAACATACAACACAATCTCTTGGAAATGAATTAATAATTTTGATGTCAAGTTTTTA AGCAATGTTTTGAATTGTTAAACCCAAAACCCTAAATAGTATTTTTACTTTTGTGGTGCAGGGGTTATGTTGGTATACAT AGTTCGGGATTTCGCGACTTCCTGTTGAAACCAGAGCTTCTTCGAGCTATTGTAGATTCTGGATTTGAGCATCCTTCAGA AGGCAAGTTTCAGAATATCCTGTCATTATGTAACTTGGCATTGGCAGAGCATCATGTTTTGGCATTGATTTTTTTTCTCG TATACTATATCTGCCTGCTTATATGTGATCAGTCCTGATATTCTGTTGCCAATGCTATCAGTCCTGATATCTTGTACTTT CTGTTTGTATTTTCAATTCATTGTACTATATGTTTTGAATTCATTTGAGCAATTGTTCAATGGATTCTTGGTGCTTTCTC CCTCTCTCTCTCTCTCTCACACACACACACACACAAAAGGGGTGAGTGGCTTGTTGATTGTTGTATGATTGAGTCTTATT ATCACATTTGATCCACTAAAGAATTGATTAAGTGAAGATAAATTTTACCAATGAACATGTGTTCTCTTGCTCTTTTATCT CCTTCCTTGCCTTTATTATGATTCTCTTCTAATCTTTATTTTATTTTTCTGCATTGACCAGGTAATCACTACTAGCATAT TATGAATACGTCACGAAAATTGGTTGGTAAACCTTTACATTAAAAGGATCTGGCAGATCATATATACTTACTGAGGATTC GTCCACTACAATTTTGTTTGCTTCTTCATCAGTGCAACATGAATGCATCCCTCAAGCAATTTTAGGAATGGATGTTATCT GCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTGTTTGTTCTGTCATCACTTCAGCAAATTGATCCTGTTCCTGGTCAA GTTGCGGCCCTTGTTCTTTGCCACACGAGGGAACTAGCTTATCAGGTATGTCTACAATAATTTAAATGCAATATATCTGA ACTGTTTTGCTAGAGTGATTTGTCTGATAAAAGTTTCCTAATTTGTACAGATTTGCCATGAATTTGAGAGGTTCAGCACA TATCTTCCTGATATAAAAGTTGCTGTTTTCTATGGAGGTGTCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATG TCCCCATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGACTAGAGACAAGGACCTTGGTTTGAAGAATGTGAGGC ATTTTATACTTGATGAGTGCGACAAGATGCTTGAATCACTTGGTCTCTTTCTTCCTCCTACTCGTTGTAGTTATTTTTTT TTGTGTGTGTGTCTTGTTTTGAACTTGCGAATTGCGATATATTTGATATTTTTTTCTGCTCTCCTTATTTATCACCACAT CTGCTATTTTGCTTTTGCAGATATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGATAAACAAGTGATGA TGTTTTCAGCTACACTCAGCAAAGAGATACGACCTGTTTGCAAGAAGTTTATGCAAGATGTAATATTTTATTTATGTGGT GATTTTTTGACGGCATATGGTGGATGGATTTCATTGTTTCTCGTACTGCTCATATTGTTATTATTGTTGCATCACTTTGT TTCCCCTTTTTGTTAAATGCAAACAAAAGTATTACTTTTTTAAGCACTTTTGCTCGTTTTTTGTGCTTATATTTGTGAAA CGTTTTGAATTTTTGGTATTTTCTATAGAAGTTATTACAAATATTATCTTGAAAATTATATTTGTTTCTTCAACGATATT ATCTTCATCATTTTATTGAAGATCTTTTTTCTTTCAGCCCATGGAAATATATGTTGATGATGAGGCCAAGTTGACCCTCC ATGGTCTTGTTCAGGTGTGTTTTGTTGACTTCGTTTTTCCTTCTCTAATTGATAATTTTTTTTTAATCTGTATATTAACT AATTTCTACTCATTTGCCCCCTTTTTCAGCACTATATCAAATTGCAAGATTCAGAGAAGAATCGTAAGTTGAATGATCTT CTTGATGCTCTTGACTTCAACCAAGTTGTTATTTTTGTCAAGAGTGTAAGCAGAGCAGCAGAATTGAACAAGTTGCTTGT GGAGTGTAATTTCCCGTCAATCTGCATACATTCTGGAATGTCACAGGAAGAAAGGTACAAGCTCTTCTGCTAACTATCAC TTTCAGGCTTTAAGAATTTTGTGCAGACATTTTGTCTTGTTCTTATTTTATATTTTGTATCTTTCTTTGCTGGATATTAC TCTGGTTAAAGGCAGGGGGTTGCTTATCATTTATTTTTAACATGAGTAACATGATGTTACAGCCAAAATCTTCACTATTC TTGGATCCTTTGATGTGAGTCTTTTGGGTACTTTTGATAGCTTGATCTAAGTATAAGGTTGCATACTTGTGATGGGTGAG ATGAACTTGCAGCATCAATTGAAGGGAGGGGAAGGAATTAGGAAAAAGATGACTGAAGATTTCAATTATGACTTCATGTT CTTTGGTTTTTAAATCTCTTGTGATATTTTACCAGCAAAGATCTGTCAAAATGTGCCTGTCCTTTGCTGAGTGAAATATT GGTCTAGGATCACAAAGTTCCTAAACAGAGTGAGATGGGCCAATTTCGTATTACTTTCTGGCTGTAATCAGGCCAGAAAA GGGCTGAACTTGCATTTAATTTGGATCATTGTATTCATATATAGCTGCATGGCTTTTTCCTGCAGGGATATAAACTTAAT CTAGTAATTGCAACCTTGTAATCATAGTTATCAATAGCGGCGCGATGTCGCGTCGCAGCCCTTCCCCGCGACTCTGAATC ACTCTGAATCAATCGCGTCATAGAACGCTGTCGCGCTGCGAATCGCGGCAAATTGCGGTGCTCCAGGTTGAAGATGGGTC GGATCCAAGGAAAATCCCCAAATTGCCCTTAAATTTTAAATTTAGGTTAAAATTTGAGGGTACTTTTGGGATTTCACTCT TTGTAAGTGAAACGGCGCGTTTCACTCGTCTTCTTCAACGCGTTTCTTCTCTTCACGCGTTTCCTCTGCAATCTCCAGTG CGACTTCCTTCAGCTCAGCCACCTTCGACCAGAAGTCCAGAACCCATGGCCACAACGCAATCTGACAAGCACCGTCCAGG CTCCGGCGACCACCACCCCTGTTTCCCTTGGGCTTCTGTTCTGTTCTGAGTTGCTCTGTTTTTTATCTTCTTTTCCTTTC TTTTCCTTTTTATTTATTATTCTGTTCTCAAAACATACTTCTCCAGTTCTTCTCCTCCAGTAGTCCTCTCTTCTCTATCA TTTCATCATGTTATGAATTTGAAGTTATATTTATCACTTCTTAGTAATTATATGTATATATTAATTATATAATATTATAT GTGAAAAATCAAAATAGCGGTCATCCCGCTATCCCACTTTTGGGGTTGGCCGCTACGCGTCGCGATCCGGGATTGACTAC TATGCTTGTAATATCATATCATAATAAAATTGATTTTGCCCGTTTCAGGTTGAAACGATACAAAGGTTTCAAAGAGGGGA AGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGGGGATTGATATAGAACGTGTTAATATAGTCATAAACTATGAC ATGCCTGATTCTGCTGATACTTATCTACACAGGGTAATTGCTTGATCCATATCATAAGATTTATTAATATTTTTTATTTC AAAAAGTAGTTTCTGGCATGCTGTTTTGGTATGCTCGAATGCTTGTAAATCACCTCTGCCCCTCATATCTTTAAATGCTT TATTGACATGTGAATTGGTAGGTTGGAAGAGCTGGCAGATTTGGGACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTTC CGGTGATTCTGAAGTTCTTAATCAGGTGAGGCCCAGTTTCATGGATGTTTAGGAAGAGCTTTTCTTTTGTTATGTCAGTT GAGAAAATGGAGGAATACAATGTCCTTTTCTGCATACGATGCATTCCTTAAAATGAAGTCTTATTTCAGGTGCAATCTCG GTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTGCCACATATAGTAAGAACTTTCTCCGTGCCTACTTGT TTATGATTCATTCCATTTCATTCTGCTTTATTTTGGTATGCCTCATTCAGTTTGATTCCACTTTCCACTCATTCAGTTTG ATTCCACTTTCCATTAGATGTTAAAACTTAGTCAAACGACCTCCGAGGTTTTTCCAGGTCATAAATGTAACATCTTTGTC ATGTTCTGCAGTGCCAAACTGATGAAATTTGGAGAAAACTAGGAGGCAGAATGCGAATGGAAGGATCTATTTGCGACTGG AGATGGATCAGTTAACATGTCATCAATTTGAGTGTTGACATAGAATGTTTTAATACAAGATAGGCCAATTTGAATTACAA GCATGGTAGGCCAATTTGAATGACTTTTTGTAGACTAAGAGATGTATCAGTTGTTCTATACCTTTTATATTCCTGCATCT GCTTTTTGTTTAGAAATGCAAAATTGAGTCTGCGTAGCTTATGAATGTATTTTATTCTAATTTACATTGTTTCAAAATTT GAGTTCATTGTCTTAACCCTCGTAAAAAAATCAATACATTGTTGAAGGTCTAGTATGTTTTGATAAATGATTTTGTAAAA TCCCGCAATATAATGCATGACTGTTCAAAGGAAGTTATAGGATTGTTAATTCGGACCAAAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0357800.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTGAATTGAAAGACACTGAGGCTTACGAGGAAGAACTCATCGATTATGAGGAAGAAGATGAAAAAGCCCCTGATTC TGCCAAGCCCGCGGCTGAAACAGCCAAAAAGGGTTATGTTGGTATACATAGTTCGGGATTTCGCGACTTCCTGTTGAAAC CAGAGCTTCTTCGAGCTATTGTAGATTCTGGATTTGAGCATCCTTCAGAAGTGCAACATGAATGCATCCCTCAAGCAATT TTAGGAATGGATGTTATCTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTGTTTGTTCTGTCATCACTTCAGCAAAT TGATCCTGTTCCTGGTCAAGTTGCGGCCCTTGTTCTTTGCCACACGAGGGAACTAGCTTATCAGATTTGCCATGAATTTG AGAGGTTCAGCACATATCTTCCTGATATAAAAGTTGCTGTTTTCTATGGAGGTGTCAATATCAAGGTTCACAAAGAATTG CTCAAGAATGAATGTCCCCATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGACTAGAGACAAGGACCTTGGTTT GAAGAATGTGAGGCATTTTATACTTGATGAGTGCGACAAGATGCTTGAATCACTTGATATGAGAAGAGATGTGCAAGAGA TTTTCAAATTGACTCCCCATGATAAACAAGTGATGATGTTTTCAGCTACACTCAGCAAAGAGATACGACCTGTTTGCAAG AAGTTTATGCAAGATCCCATGGAAATATATGTTGATGATGAGGCCAAGTTGACCCTCCATGGTCTTGTTCAGCACTATAT CAAATTGCAAGATTCAGAGAAGAATCGTAAGTTGAATGATCTTCTTGATGCTCTTGACTTCAACCAAGTTGTTATTTTTG TCAAGAGTGTAAGCAGAGCAGCAGAATTGAACAAGTTGCTTGTGGAGTGTAATTTCCCGTCAATCTGCATACATTCTGGA ATGTCACAGGAAGAAAGGTTGAAACGATACAAAGGTTTCAAAGAGGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGT AGGAAGGGGGATTGATATAGAACGTGTTAATATAGTCATAAACTATGACATGCCTGATTCTGCTGATACTTATCTACACA GGGTTGGAAGAGCTGGCAGATTTGGGACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTTCCGGTGATTCTGAAGTTCTT AATCAGGTGCAATCTCGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTGCCACATATATGCCAAACTG A
Download CDS Sequence

Protein sequence (LotjaGi3g1v0357800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGELKDTEAYEEELIDYEEEDEKAPDSAKPAAETAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI LGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKEL LKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCK KFMQDPMEIYVDDEAKLTLHGLVQHYIKLQDSEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG MSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSSGDSEVL NQVQSRFEVDIKELPEQIDTATYMPN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24031
10 411 402 1.6E-231 –
PANTHER
PTHR24031:SF675
10 411 402 1.6E-231 –
Gene3D
G3DSA:3.40.50.300
35 251 217 6.3E-65 –
CDD
cd17950
44 251 208 5.04137E-162 –
ProSiteProfiles
PS51195
45 73 29 9.665
IPR014014
SMART
SM00487
64 265 202 9.1E-53
IPR014001
Pfam
PF00270
70 235 166 5.2E-37
IPR011545
ProSiteProfiles
PS51192
76 249 174 25.605
IPR014001
SUPERFAMILY
SSF52540
114 399 286 4.78E-69
IPR027417
CDD
cd18787
262 391 130 8.3385E-58 –
Gene3D
G3DSA:3.40.50.300
263 426 164 2.1E-53 –
Pfam
PF00271
275 382 108 4.2E-28
IPR001650
ProSiteProfiles
PS51194
277 422 146 22.664
IPR001650
SMART
SM00490
301 382 82 3.8E-31
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0357800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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