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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0357800 |
| Transcript ID | LotjaGi3g1v0357800.5 |
| Related isoforms 12 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr|A0A1J7GWF5|A0A1J7GWF5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0357800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73998633..74004064) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTGAATTGAAAGACACTGAGGCTTACGAGGAAGAACTCATCGATTATGAGGAAGAAGATGAAAAAGCCCCTGATTC TGCCAAGCCCGCGGCTGAAACAGCCAAAAAGTTAGTTCCTTTCCCATTTTTTCTATTGCGCTTATTGTTTTTTGTTTTGT AAATCTTAAATTGTCAATTATCATGGTTCTTTTGTTTTTTTATGTGCTTTGGGTTCAATAAATGGAGCATAACAGGAAAA AAGTTGCATGCTTGAAAGTGATTTATGTCCAATTTGGTTATTTATTAGAGAAAAATGATTTTTTAGTGCAAAAACGTATT GGATTTAATCAGTGTTACTTTCTTGGTGAGCATATTGAGTCTATGAATTACCGGTTGTGCTATTGAGTTGTTGATTGAAC CAGTTCAATTGGTATAACACGGAAAACTGTAGTGAAAATATTGTTCTGTATTTGATTAAAACAAGTTTATACATATAAAA TATGCCTTTAGATTTTAAAGGGCAAGTCTGGAGCAATGAATTATGCCCATTGCTTGTTTCATATACACACAGGCTTGATT CTCAGTTGCCAGACTAAAATTACAATGGCTATCAAAATGTTTATATTAAAAATCTAGTGGTAGCACAGTGGCTATCACCT ATTGAATGGCCCAAGTGTGTGCTGAGTTCGATTCCTTTTGCTTGTGCATGCACATCTAGTAATTAATTTTTTTACCACAT TCTCACACCTCATGTGCATGTAGAACTGGGCTGAGTGAACCTGAGTGGTCCATTCCCTGACCCAACTGGTCTAGTTCTTA TAACACTGGATTTAACTGTTTCTTTATTTCATTTTATTAGGATTTGTCTAGACTACAAGTCACTGTGCATGTTATTAATA AATATGATTTGAGCACATGCCAGGGGCATATATTGCCAATTTAGAATATAGCTAAAAAAATCATAATATGATAATGGTAT AAAAACTCTTATTTTTAACAATTATAATTTGTGAATTATTAGATGAAGCCATAGGATTGCAATGTTTAATTTAAAATAGT TGTTTTATTTCTTCATTAGTCTTAACTCGTAAGGTTTTCTTGATATGCTATATGTATATTAATTTTTGGCTATAAAACAT ACAACACAATCTCTTGGAAATGAATTAATAATTTTGATGTCAAGTTTTTAAGCAATGTTTTGAATTGTTAAACCCAAAAC CCTAAATAGTATTTTTACTTTTGTGGTGCAGGGGTTATGTTGGTATACATAGTTCGGGATTTCGCGACTTCCTGTTGAAA CCAGAGCTTCTTCGAGCTATTGTAGATTCTGGATTTGAGCATCCTTCAGAAGGCAAGTTTCAGAATATCCTGTCATTATG TAACTTGGCATTGGCAGAGCATCATGTTTTGGCATTGATTTTTTTTCTCGTATACTATATCTGCCTGCTTATATGTGATC AGTCCTGATATTCTGTTGCCAATGCTATCAGTCCTGATATCTTGTACTTTCTGTTTGTATTTTCAATTCATTGTACTATA TGTTTTGAATTCATTTGAGCAATTGTTCAATGGATTCTTGGTGCTTTCTCCCTCTCTCTCTCTCTCTCACACACACACAC ACACAAAAGGGGTGAGTGGCTTGTTGATTGTTGTATGATTGAGTCTTATTATCACATTTGATCCACTAAAGAATTGATTA AGTGAAGATAAATTTTACCAATGAACATGTGTTCTCTTGCTCTTTTATCTCCTTCCTTGCCTTTATTATGATTCTCTTCT AATCTTTATTTTATTTTTCTGCATTGACCAGGTAATCACTACTAGCATATTATGAATACGTCACGAAAATTGGTTGGTAA ACCTTTACATTAAAAGGATCTGGCAGATCATATATACTTACTGAGGATTCGTCCACTACAATTTTGTTTGCTTCTTCATC AGTGCAACATGAATGCATCCCTCAAGCAATTTTAGGAATGGATGTTATCTGCCAAGCAAAATCTGGGATGGGAAAGACTG CTGTGTTTGTTCTGTCATCACTTCAGCAAATTGATCCTGTTCCTGGTCAAGTTGCGGCCCTTGTTCTTTGCCACACGAGG GAACTAGCTTATCAGGTATGTCTACAATAATTTAAATGCAATATATCTGAACTGTTTTGCTAGAGTGATTTGTCTGATAA AAGTTTCCTAATTTGTACAGATTTGCCATGAATTTGAGAGGTTCAGCACATATCTTCCTGATATAAAAGTTGCTGTTTTC TATGGAGGTGTCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCCCATATTGTTGTTGGAACACCTGGGAG GATTCTTGCTCTGACTAGAGACAAGGACCTTGGTTTGAAGAATGTGAGGCATTTTATACTTGATGAGTGCGACAAGATGC TTGAATCACTTGGTCTCTTTCTTCCTCCTACTCGTTGTAGTTATTTTTTTTTGTGTGTGTGTCTTGTTTTGAACTTGCGA ATTGCGATATATTTGATATTTTTTTCTGCTCTCCTTATTTATCACCACATCTGCTATTTTGCTTTTGCAGATATGAGAAG AGATGTGCAAGAGATTTTCAAATTGACTCCCCATGATAAACAAGTGATGATGTTTTCAGCTACACTCAGCAAAGAGATAC GACCTGTTTGCAAGAAGTTTATGCAAGATGTAATATTTTATTTATGTGGTGATTTTTTGACGGCATATGGTGGATGGATT TCATTGTTTCTCGTACTGCTCATATTGTTATTATTGTTGCATCACTTTGTTTCCCCTTTTTGTTAAATGCAAACAAAAGT ATTACTTTTTTAAGCACTTTTGCTCGTTTTTTGTGCTTATATTTGTGAAACGTTTTGAATTTTTGGTATTTTCTATAGAA GTTATTACAAATATTATCTTGAAAATTATATTTGTTTCTTCAACGATATTATCTTCATCATTTTATTGAAGATCTTTTTT CTTTCAGCCCATGGAAATATATGTTGATGATGAGGCCAAGTTGACCCTCCATGGTCTTGTTCAGGTGTGTTTTGTTGACT TCGTTTTTCCTTCTCTAATTGATAATTTTTTTTTAATCTGTATATTAACTAATTTCTACTCATTTGCCCCCTTTTTCAGC ACTATATCAAATTGCAAGATTCAGAGAAGAATCGTAAGTTGAATGATCTTCTTGATGCTCTTGACTTCAACCAAGTTGTT ATTTTTGTCAAGAGTGTAAGCAGAGCAGCAGAATTGAACAAGTTGCTTGTGGAGTGTAATTTCCCGTCAATCTGCATACA TTCTGGAATGTCACAGGAAGAAAGGTACAAGCTCTTCTGCTAACTATCACTTTCAGGCTTTAAGAATTTTGTGCAGACAT TTTGTCTTGTTCTTATTTTATATTTTGTATCTTTCTTTGCTGGATATTACTCTGGTTAAAGGCAGGGGGTTGCTTATCAT TTATTTTTAACATGAGTAACATGATGTTACAGCCAAAATCTTCACTATTCTTGGATCCTTTGATGTGAGTCTTTTGGGTA CTTTTGATAGCTTGATCTAAGTATAAGGTTGCATACTTGTGATGGGTGAGATGAACTTGCAGCATCAATTGAAGGGAGGG GAAGGAATTAGGAAAAAGATGACTGAAGATTTCAATTATGACTTCATGTTCTTTGGTTTTTAAATCTCTTGTGATATTTT ACCAGCAAAGATCTGTCAAAATGTGCCTGTCCTTTGCTGAGTGAAATATTGGTCTAGGATCACAAAGTTCCTAAACAGAG TGAGATGGGCCAATTTCGTATTACTTTCTGGCTGTAATCAGGCCAGAAAAGGGCTGAACTTGCATTTAATTTGGATCATT GTATTCATATATAGCTGCATGGCTTTTTCCTGCAGGGATATAAACTTAATCTAGTAATTGCAACCTTGTAATCATAGTTA TCAATAGCGGCGCGATGTCGCGTCGCAGCCCTTCCCCGCGACTCTGAATCACTCTGAATCAATCGCGTCATAGAACGCTG TCGCGCTGCGAATCGCGGCAAATTGCGGTGCTCCAGGTTGAAGATGGGTCGGATCCAAGGAAAATCCCCAAATTGCCCTT AAATTTTAAATTTAGGTTAAAATTTGAGGGTACTTTTGGGATTTCACTCTTTGTAAGTGAAACGGCGCGTTTCACTCGTC TTCTTCAACGCGTTTCTTCTCTTCACGCGTTTCCTCTGCAATCTCCAGTGCGACTTCCTTCAGCTCAGCCACCTTCGACC AGAAGTCCAGAACCCATGGCCACAACGCAATCTGACAAGCACCGTCCAGGCTCCGGCGACCACCACCCCTGTTTCCCTTG GGCTTCTGTTCTGTTCTGAGTTGCTCTGTTTTTTATCTTCTTTTCCTTTCTTTTCCTTTTTATTTATTATTCTGTTCTCA AAACATACTTCTCCAGTTCTTCTCCTCCAGTAGTCCTCTCTTCTCTATCATTTCATCATGTTATGAATTTGAAGTTATAT TTATCACTTCTTAGTAATTATATGTATATATTAATTATATAATATTATATGTGAAAAATCAAAATAGCGGTCATCCCGCT ATCCCACTTTTGGGGTTGGCCGCTACGCGTCGCGATCCGGGATTGACTACTATGCTTGTAATATCATATCATAATAAAAT TGATTTTGCCCGTTTCAGGTTGAAACGATACAAAGGTTTCAAAGAGGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAG TAGGAAGGGGGATTGATATAGAACGTGTTAATATAGTCATAAACTATGACATGCCTGATTCTGCTGATACTTATCTACAC AGGGTAATTGCTTGATCCATATCATAAGATTTATTAATATTTTTTATTTCAAAAAGTAGTTTCTGGCATGCTGTTTTGGT ATGCTCGAATGCTTGTAAATCACCTCTGCCCCTCATATCTTTAAATGCTTTATTGACATGTGAATTGGTAGGTTGGAAGA GCTGGCAGATTTGGGACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTTCCGGTGATTCTGAAGTTCTTAATCAGGTGAG GCCCAGTTTCATGGATGTTTAGGAAGAGCTTTTCTTTTGTTATGTCAGTTGAGAAAATGGAGGAATACAATGTCCTTTTC TGCATACGATGCATTCCTTAAAATGAAGTCTTATTTCAGGTGCAATCTCGGTTTGAGGTTGATATAAAGGAGCTTCCTGA ACAAATTGACACTGCCACATATAGTAAGAACTTTCTCCGTGCCTACTTGTTTATGATTCATTCCATTTCATTCTGCTTTA TTTTGGTATGCCTCATTCAGTTTGATTCCACTTTCCACTCATTCAGTTTGATTCCACTTTCCATTAGATGTTAAAACTTA GTCAAACGACCTCCGAGGTTTTTCCAGGTCATAAATGTAACATCTTTGTCATGTTCTGCAGTGCCAAACTGA
CDS sequence (LotjaGi3g1v0357800.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGAATTGAAAGACACTGAGGCTTACGAGGAAGAACTCATCGATTATGAGGAAGAAGATGAAAAAGCCCCTGATTC TGCCAAGCCCGCGGCTGAAACAGCCAAAAAGGGTTATGTTGGTATACATAGTTCGGGATTTCGCGACTTCCTGTTGAAAC CAGAGCTTCTTCGAGCTATTGTAGATTCTGGATTTGAGCATCCTTCAGAAGGCAAGTTTCAGATACTTACTGAGGATTCG TCCACTACAATTTTGTTTGCTTCTTCATCAGTGCAACATGAATGCATCCCTCAAGCAATTTTAGGAATGGATGTTATCTG CCAAGCAAAATCTGGGATGGGAAAGACTGCTGTGTTTGTTCTGTCATCACTTCAGCAAATTGATCCTGTTCCTGGTCAAG TTGCGGCCCTTGTTCTTTGCCACACGAGGGAACTAGCTTATCAGATTTGCCATGAATTTGAGAGGTTCAGCACATATCTT CCTGATATAAAAGTTGCTGTTTTCTATGGAGGTGTCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCCCA TATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGACTAGAGACAAGGACCTTGGTTTGAAGAATGTGAGGCATTTTA TACTTGATGAGTGCGACAAGATGCTTGAATCACTTGATATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCAT GATAAACAAGTGATGATGTTTTCAGCTACACTCAGCAAAGAGATACGACCTGTTTGCAAGAAGTTTATGCAAGATCCCAT GGAAATATATGTTGATGATGAGGCCAAGTTGACCCTCCATGGTCTTGTTCAGCACTATATCAAATTGCAAGATTCAGAGA AGAATCGTAAGTTGAATGATCTTCTTGATGCTCTTGACTTCAACCAAGTTGTTATTTTTGTCAAGAGTGTAAGCAGAGCA GCAGAATTGAACAAGTTGCTTGTGGAGTGTAATTTCCCGTCAATCTGCATACATTCTGGAATGTCACAGGAAGAAAGGTT GAAACGATACAAAGGTTTCAAAGAGGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGGGGATTGATATAG AACGTGTTAATATAGTCATAAACTATGACATGCCTGATTCTGCTGATACTTATCTACACAGGGTTGGAAGAGCTGGCAGA TTTGGGACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTTCCGGTGATTCTGAAGTTCTTAATCAGGTGCAATCTCGGTT TGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTGCCACATATATGCCAAACTGA
Protein sequence (LotjaGi3g1v0357800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGELKDTEAYEEELIDYEEEDEKAPDSAKPAAETAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFQILTEDS STTILFASSSVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVAALVLCHTRELAYQICHEFERFSTYL PDIKVAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPH DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQDSEKNRKLNDLLDALDFNQVVIFVKSVSRA AELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR FGTKGLAITFVSSSGDSEVLNQVQSRFEVDIKELPEQIDTATYMPN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 431 | 425 | 3.0E-228 | – | |
| PANTHER | 7 | 431 | 425 | 3.0E-228 | – | |
| Gene3D | 35 | 271 | 237 | 3.9E-58 | – | |
| CDD | 44 | 271 | 228 | 3.7938E-157 | – | |
| ProSiteProfiles | 45 | 73 | 29 | 7.283 | ||
| SMART | 83 | 285 | 203 | 4.9E-49 | ||
| Pfam | 90 | 255 | 166 | 6.8E-37 | ||
| ProSiteProfiles | 96 | 269 | 174 | 25.605 | ||
| SUPERFAMILY | 134 | 419 | 286 | 5.46E-69 | ||
| CDD | 282 | 411 | 130 | 8.41253E-58 | – | |
| Gene3D | 283 | 446 | 164 | 2.3E-53 | – | |
| Pfam | 295 | 402 | 108 | 4.5E-28 | ||
| ProSiteProfiles | 297 | 442 | 146 | 22.664 | ||
| SMART | 321 | 402 | 82 | 3.8E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0357800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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