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LotjaGi3g1v0357800.9

Overview

Field Value
Gene ID LotjaGi3g1v0357800
Transcript ID LotjaGi3g1v0357800.9
Related isoforms 12
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase; TAIR: AT5G11170.2 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr|A0A072UHT1|A0A072UHT1_MEDTR DEAD-box ATP-dependent RNA helicase-like protein; Found in the gene: LotjaGi3g1v0357800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:73999567..74004064) extracted from Lotus japonicus Gifu genome v1.2.

AAAAAATCATAATATGATAATGGTATAAAAACTCTTATTTTTAACAATTATAATTTGTGAATTATTAGATGAAGCCATAG GATTGCAATGTTTAATTTAAAATAGTTGTTTTATTTCTTCATTAGTCTTAACTCGTAAGGTTTTCTTGATATGCTATATG TATATTAATTTTTGGCTATAAAACATACAACACAATCTCTTGGAAATGAATTAATAATTTTGATGTCAAGTTTTTAAGCA ATGTTTTGAATTGTTAAACCCAAAACCCTAAATAGTATTTTTACTTTTGTGGTGCAGGGGTTATGTTGGTATACATAGTT CGGGATTTCGCGACTTCCTGTTGAAACCAGAGCTTCTTCGAGCTATTGTAGATTCTGGATTTGAGCATCCTTCAGAAGGC AAGTTTCAGAATATCCTGTCATTATGTAACTTGGCATTGGCAGAGCATCATGTTTTGGCATTGATTTTTTTTCTCGTATA CTATATCTGCCTGCTTATATGTGATCAGTCCTGATATTCTGTTGCCAATGCTATCAGTCCTGATATCTTGTACTTTCTGT TTGTATTTTCAATTCATTGTACTATATGTTTTGAATTCATTTGAGCAATTGTTCAATGGATTCTTGGTGCTTTCTCCCTC TCTCTCTCTCTCTCACACACACACACACACAAAAGGGGTGAGTGGCTTGTTGATTGTTGTATGATTGAGTCTTATTATCA CATTTGATCCACTAAAGAATTGATTAAGTGAAGATAAATTTTACCAATGAACATGTGTTCTCTTGCTCTTTTATCTCCTT CCTTGCCTTTATTATGATTCTCTTCTAATCTTTATTTTATTTTTCTGCATTGACCAGGTAATCACTACTAGCATATTATG AATACGTCACGAAAATTGGTTGGTAAACCTTTACATTAAAAGGATCTGGCAGATCATATATACTTACTGAGGATTCGTCC ACTACAATTTTGTTTGCTTCTTCATCAGTGCAACATGAATGCATCCCTCAAGCAATTTTAGGAATGGATGTTATCTGCCA AGCAAAATCTGGGATGGGAAAGACTGCTGTGTTTGTTCTGTCATCACTTCAGCAAATTGATCCTGTTCCTGGTCAAGTTG CGGCCCTTGTTCTTTGCCACACGAGGGAACTAGCTTATCAGGTATGTCTACAATAATTTAAATGCAATATATCTGAACTG TTTTGCTAGAGTGATTTGTCTGATAAAAGTTTCCTAATTTGTACAGATTTGCCATGAATTTGAGAGGTTCAGCACATATC TTCCTGATATAAAAGTTGCTGTTTTCTATGGAGGTGTCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCC CATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGACTAGAGACAAGGACCTTGGTTTGAAGAATGTGAGGCATTT TATACTTGATGAGTGCGACAAGATGCTTGAATCACTTGGTCTCTTTCTTCCTCCTACTCGTTGTAGTTATTTTTTTTTGT GTGTGTGTCTTGTTTTGAACTTGCGAATTGCGATATATTTGATATTTTTTTCTGCTCTCCTTATTTATCACCACATCTGC TATTTTGCTTTTGCAGATATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGATAAACAAGTGATGATGTT TTCAGCTACACTCAGCAAAGAGATACGACCTGTTTGCAAGAAGTTTATGCAAGATGTAATATTTTATTTATGTGGTGATT TTTTGACGGCATATGGTGGATGGATTTCATTGTTTCTCGTACTGCTCATATTGTTATTATTGTTGCATCACTTTGTTTCC CCTTTTTGTTAAATGCAAACAAAAGTATTACTTTTTTAAGCACTTTTGCTCGTTTTTTGTGCTTATATTTGTGAAACGTT TTGAATTTTTGGTATTTTCTATAGAAGTTATTACAAATATTATCTTGAAAATTATATTTGTTTCTTCAACGATATTATCT TCATCATTTTATTGAAGATCTTTTTTCTTTCAGCCCATGGAAATATATGTTGATGATGAGGCCAAGTTGACCCTCCATGG TCTTGTTCAGGTGTGTTTTGTTGACTTCGTTTTTCCTTCTCTAATTGATAATTTTTTTTTAATCTGTATATTAACTAATT TCTACTCATTTGCCCCCTTTTTCAGCACTATATCAAATTGCAAGATTCAGAGAAGAATCGTAAGTTGAATGATCTTCTTG ATGCTCTTGACTTCAACCAAGTTGTTATTTTTGTCAAGAGTGTAAGCAGAGCAGCAGAATTGAACAAGTTGCTTGTGGAG TGTAATTTCCCGTCAATCTGCATACATTCTGGAATGTCACAGGAAGAAAGGTACAAGCTCTTCTGCTAACTATCACTTTC AGGCTTTAAGAATTTTGTGCAGACATTTTGTCTTGTTCTTATTTTATATTTTGTATCTTTCTTTGCTGGATATTACTCTG GTTAAAGGCAGGGGGTTGCTTATCATTTATTTTTAACATGAGTAACATGATGTTACAGCCAAAATCTTCACTATTCTTGG ATCCTTTGATGTGAGTCTTTTGGGTACTTTTGATAGCTTGATCTAAGTATAAGGTTGCATACTTGTGATGGGTGAGATGA ACTTGCAGCATCAATTGAAGGGAGGGGAAGGAATTAGGAAAAAGATGACTGAAGATTTCAATTATGACTTCATGTTCTTT GGTTTTTAAATCTCTTGTGATATTTTACCAGCAAAGATCTGTCAAAATGTGCCTGTCCTTTGCTGAGTGAAATATTGGTC TAGGATCACAAAGTTCCTAAACAGAGTGAGATGGGCCAATTTCGTATTACTTTCTGGCTGTAATCAGGCCAGAAAAGGGC TGAACTTGCATTTAATTTGGATCATTGTATTCATATATAGCTGCATGGCTTTTTCCTGCAGGGATATAAACTTAATCTAG TAATTGCAACCTTGTAATCATAGTTATCAATAGCGGCGCGATGTCGCGTCGCAGCCCTTCCCCGCGACTCTGAATCACTC TGAATCAATCGCGTCATAGAACGCTGTCGCGCTGCGAATCGCGGCAAATTGCGGTGCTCCAGGTTGAAGATGGGTCGGAT CCAAGGAAAATCCCCAAATTGCCCTTAAATTTTAAATTTAGGTTAAAATTTGAGGGTACTTTTGGGATTTCACTCTTTGT AAGTGAAACGGCGCGTTTCACTCGTCTTCTTCAACGCGTTTCTTCTCTTCACGCGTTTCCTCTGCAATCTCCAGTGCGAC TTCCTTCAGCTCAGCCACCTTCGACCAGAAGTCCAGAACCCATGGCCACAACGCAATCTGACAAGCACCGTCCAGGCTCC GGCGACCACCACCCCTGTTTCCCTTGGGCTTCTGTTCTGTTCTGAGTTGCTCTGTTTTTTATCTTCTTTTCCTTTCTTTT CCTTTTTATTTATTATTCTGTTCTCAAAACATACTTCTCCAGTTCTTCTCCTCCAGTAGTCCTCTCTTCTCTATCATTTC ATCATGTTATGAATTTGAAGTTATATTTATCACTTCTTAGTAATTATATGTATATATTAATTATATAATATTATATGTGA AAAATCAAAATAGCGGTCATCCCGCTATCCCACTTTTGGGGTTGGCCGCTACGCGTCGCGATCCGGGATTGACTACTATG CTTGTAATATCATATCATAATAAAATTGATTTTGCCCGTTTCAGGTTGAAACGATACAAAGGTTTCAAAGAGGGGAAGCA AAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGGGGATTGATATAGAACGTGTTAATATAGTCATAAACTATGACATGC CTGATTCTGCTGATACTTATCTACACAGGGTAATTGCTTGATCCATATCATAAGATTTATTAATATTTTTTATTTCAAAA AGTAGTTTCTGGCATGCTGTTTTGGTATGCTCGAATGCTTGTAAATCACCTCTGCCCCTCATATCTTTAAATGCTTTATT GACATGTGAATTGGTAGGTTGGAAGAGCTGGCAGATTTGGGACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTTCCGGT GATTCTGAAGTTCTTAATCAGGTGAGGCCCAGTTTCATGGATGTTTAGGAAGAGCTTTTCTTTTGTTATGTCAGTTGAGA AAATGGAGGAATACAATGTCCTTTTCTGCATACGATGCATTCCTTAAAATGAAGTCTTATTTCAGGTGCAATCTCGGTTT GAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTGCCACATATAGTAAGAACTTTCTCCGTGCCTACTTGTTTAT GATTCATTCCATTTCATTCTGCTTTATTTTGGTATGCCTCATTCAGTTTGATTCCACTTTCCACTCATTCAGTTTGATTC CACTTTCCATTAGATGTTAAAACTTAGTCAAACGACCTCCGAGGTTTTTCCAGGTCATAAATGTAACATCTTTGTCATGT TCTGCAGTGCCAAACTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0357800.9) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGTTATCTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTGTTTGTTCTGTCATCACTTCAGCAAATTGATCC TGTTCCTGGTCAAGTTGCGGCCCTTGTTCTTTGCCACACGAGGGAACTAGCTTATCAGATTTGCCATGAATTTGAGAGGT TCAGCACATATCTTCCTGATATAAAAGTTGCTGTTTTCTATGGAGGTGTCAATATCAAGGTTCACAAAGAATTGCTCAAG AATGAATGTCCCCATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGACTAGAGACAAGGACCTTGGTTTGAAGAA TGTGAGGCATTTTATACTTGATGAGTGCGACAAGATGCTTGAATCACTTGATATGAGAAGAGATGTGCAAGAGATTTTCA AATTGACTCCCCATGATAAACAAGTGATGATGTTTTCAGCTACACTCAGCAAAGAGATACGACCTGTTTGCAAGAAGTTT ATGCAAGATCCCATGGAAATATATGTTGATGATGAGGCCAAGTTGACCCTCCATGGTCTTGTTCAGCACTATATCAAATT GCAAGATTCAGAGAAGAATCGTAAGTTGAATGATCTTCTTGATGCTCTTGACTTCAACCAAGTTGTTATTTTTGTCAAGA GTGTAAGCAGAGCAGCAGAATTGAACAAGTTGCTTGTGGAGTGTAATTTCCCGTCAATCTGCATACATTCTGGAATGTCA CAGGAAGAAAGGTTGAAACGATACAAAGGTTTCAAAGAGGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAG GGGGATTGATATAGAACGTGTTAATATAGTCATAAACTATGACATGCCTGATTCTGCTGATACTTATCTACACAGGGTTG GAAGAGCTGGCAGATTTGGGACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTTCCGGTGATTCTGAAGTTCTTAATCAG GTGCAATCTCGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTGCCACATATATGCCAAACTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0357800.9) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKELLK NECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKF MQDPMEIYVDDEAKLTLHGLVQHYIKLQDSEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS QEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSSGDSEVLNQ VQSRFEVDIKELPEQIDTATYMPN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24031:SF675
1 329 329 2.8E-203 –
CDD
cd17950
1 169 169 5.551E-126 –
Gene3D
G3DSA:3.40.50.300
1 169 169 4.8E-52 –
PANTHER
PTHR24031
1 329 329 2.8E-203 –
ProSiteProfiles
PS51192
1 167 167 24.87
IPR014001
SMART
SM00487
1 183 183 6.8E-38
IPR014001
Pfam
PF00270
2 153 152 2.8E-33
IPR011545
SUPERFAMILY
SSF52540
32 317 286 2.36E-69
IPR027417
CDD
cd18787
180 309 130 4.36753E-58 –
Gene3D
G3DSA:3.40.50.300
181 344 164 1.3E-53 –
Pfam
PF00271
193 300 108 2.8E-28
IPR001650
ProSiteProfiles
PS51194
195 340 146 22.664
IPR001650
SMART
SM00490
219 300 82 3.8E-31
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0357800.9, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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