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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0360300 |
| Transcript ID | LotjaGi3g1v0360300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G15510.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510, chloroplastic; TrEMBL-Plants: tr|A0A0R0IYV3|A0A0R0IYV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0360300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74309834..74312994) extracted from Lotus japonicus Gifu genome v1.2.
CAAGAAGTTATGGATAAGATGTTGTTGGCAGCTCTAGAGACAAAGATCTTTAAAACAAGAAAACATTTTACTCTCCTCTC TTTGTTCCTACTTTCACTCTTGACTCACACTGTCGTGGTTACCATCTCATGCTCGTTAACACCAATGTCTGCGTTTGCTA CATCTTCGCAGCTCCATGCTCAAAGGGACCACCCCATTCTTCCCACCATTTCCAGCCACTTCAATCTCAAAACTCTCAAC TTCCAGATTCTCCATCCCAGACTCAGAAGTAGTAAACAATTTCGTGTCTCAAGTTCCATCACCACCACCGCCACCGCCAC CGCTTCCATCAACAACCACAACCCAAACTCCTATATTTGTCAACTATGCCTTCTTGGGAACTTGGACCGCGCTATGAGCT ACCTAGACTCCACACACGAGCTTCAAATTCGTGTTGAAGAAGATGCTTACGTTGCTTTGATTCGTCTCTGTGAGTGGAAG AGAGCAAGGAAGGAAGGGTCTCGGGTTTACTCCTATGTTTCTAAATCCATGGCCATTTTGAGCCTTCAGCTGGGGAATGC TCTTTTGAGCATGTTTGTCAGGTTTGGGAACTTGGTGGATGCTTGGTATGTGTTTGGGAGAATGGAAGAGAGGAACGTGT TTTCTTGGAATGTTTTGGTTGGTGGGTATGCTAAGGGTGGGTTCTTTGATGAGGCATTGAATCTTTATCATAGAATGTTG TGGGTTGGTGTGAGGCCTGATGTTTACACTTTTCCTTGTGTTTTGAGGACTTGTGGTGGGATTCCTGACTTGGTTAGGGG TAGGGAGATTCATGTGCATGTTCTGAGATATGGGTTTGAGTCAGAAGTGGATGTGGTTAATGCATTGATAACTATGTATG TGAAATGTGGGGATATTGATAATGCGAGGTTGGTGTTCGATAAAATGCCTGACCGAGACAGGATTTCGTGGAACGCCATG ATTTCTGGGTATTTTGAGAATGGAGAGTGTTTCGAGGGACTTAGACTGTTCTGCACGATGCTTGAAATTCCAGTTGAGCC AGATTTGATGACCTTGACTAGTGTGATTAGTGCATGCGAGCTTATCAGTGATGAGAGATTGGGGAGGGAGATTCATGGTT ATGTTATGAGAACAGAGTTCTGGAGAGACCCTTCGGTTTGTAATTCGTTAGTTCAGATGTACTCATCTGTTGGACTTATT GAGGAAGGTGAAAAAGTTTTTTCTCGAACGGAAGGTAGAGATGTAGTTTCATGGACTTCAATGATATCAGGTTATGAGAA TAATTCAATGCCTCATAAAGCTCTTGAGACATATGAAATGATGGAAGAGGAAGGTATCATGCCAGATGAAATCACTATAG CCAGTGTGCTATCTGCTTGTTCTTGTTTATGCCATTTAGATATGGGGATGAAACTTCATGAAATGGCCAAGCAGACAGGG TTCATCTCTTATACAATAGTTGCAAACACACTCATTGACATGTATGCCAAGTGTAAATCCATTGACATGGCTTTAGAAGT TTTCCACTCTACTCGTGACAAGAATATAATCTCCTGGACATCTATCATCCTTGGTCTTCGGATCAATAACCGATATTTTG AAGCTTTAGTTTTCTTCAGAGATATGATGCGTAGACTAAAGCCAAACTCTGTTACTTTAGTTTGTGTCCTATCTGCATGT GCTAGAATTGGAGCTCTGGGATGTGGTAAAGAGATCCATGCCTATGCTTTGAGAACCGGAGTAAGTTTTTATGGTTTTCT GCCGAATGCAATTTTGGACTTGTATGTGAGGTGTGGAAGAATGGAATATGGCTGGAAACAATTTTTCTCAGGTGATCAAG ATATTTCTGCTTGGAACATTTTGCTAACAGGATACGCTGAGCGTGGGAAAGGAGCACTTGCTGCTGAGCTTTTTCAGAGA ATGGTAGAATCAAACATTGAACCTGATGAAATCACATTCATCTCCATATTATGTGCTTGCAGCAGATCTAGTATGGTTGC AGAAGGCTTAGAATATTTTAACAGCATGAAATACGAGTACTCTATCACACCTAATCTGAAACACTACGCATGTGTAGTCG ATTTACTTGGCCGTGCTGGGAAATTAGAGGATGCTTATGAATTCATACAGAAAATTCCAATGAAACCAGACCCTGCAGTT TGGGGAGCCTTGTTAAATGCGTGCCGGATCCACCGTGATGTCGAGCTAGGGGAACTTGCTGCAGAGAACATCTTTCAAGA AGATACAACCAGCGTTGGCTATTACATTCTTCTGTCTAATCTATATGCTGATAATGGTAAATGGGACAAAGTTGCAGAAG TAAGAAAAATGATGAGACAGAATGGGCTAATAGTAGATCCTGGATGCAGCTGGGTGGAAATTAAGGGCACAGTGCATGCT TTTCTCAGCGGTGATAACTTCCATCCTCAAATCGAGGAAATAAACGCGCTTTTGGAGCGGTTTTACGAGAAAATGAAGGT AGCTGGTATTGAAGGGCCAGAAAGTAGTCACATGAACATAATGGAAGCTTCCAAGGCTGATATATTTTGTGGACACAGTG AGAGACAGGCCATTGCCTTTGGACTTCTTAATTCTGCTCCTGGGATGCCCATTTGGGTGACCAAGAATCTTTACATGTGC CAAAGTTGTCACAACATTGTCAAATTTATCTCGAAGGAGGTCCGCAGAGAGATTTCTGTAAGAGACGCTGAACGGTTTCA CCATTTCAGGGGAGGTATCTGCTCTTGCATGGATGAAAGATACTAGTCAGATTGATTATTAGCTGGTATAAACTGTAAGA TATGTAGCATCATATTAAAAAGTTATGATCATAGGGTACTTCAACTTTGAGATCCTTCAGAGAAGCGATTAATGGAGCTG TGAATCATTAATCATGCATTGTATAACATGATATAGAAAGAAAGAAAGAAGGTAGTTTTATGTATGCTGCACATAGGTTA TTCTCATTTGTAAACTTAAGACTGTAGTATAGTAATTTTCAACTACTTTTATACAAATCAGGATATGTCTGATCCGGTAA TTCCAAATGATACTGAAATATACAGTCCAACAAGTGATACAAACAGATTATAAAAGTTTGTAGGAGAGGATATGTATGGT AAATTGACTAAATTCCACGGTGCTGCTGTGGTAATGATTTT
CDS sequence (LotjaGi3g1v0360300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAAGATGTTGTTGGCAGCTCTAGAGACAAAGATCTTTAAAACAAGAAAACATTTTACTCTCCTCTCTTTGTTCCT ACTTTCACTCTTGACTCACACTGTCGTGGTTACCATCTCATGCTCGTTAACACCAATGTCTGCGTTTGCTACATCTTCGC AGCTCCATGCTCAAAGGGACCACCCCATTCTTCCCACCATTTCCAGCCACTTCAATCTCAAAACTCTCAACTTCCAGATT CTCCATCCCAGACTCAGAAGTAGTAAACAATTTCGTGTCTCAAGTTCCATCACCACCACCGCCACCGCCACCGCTTCCAT CAACAACCACAACCCAAACTCCTATATTTGTCAACTATGCCTTCTTGGGAACTTGGACCGCGCTATGAGCTACCTAGACT CCACACACGAGCTTCAAATTCGTGTTGAAGAAGATGCTTACGTTGCTTTGATTCGTCTCTGTGAGTGGAAGAGAGCAAGG AAGGAAGGGTCTCGGGTTTACTCCTATGTTTCTAAATCCATGGCCATTTTGAGCCTTCAGCTGGGGAATGCTCTTTTGAG CATGTTTGTCAGGTTTGGGAACTTGGTGGATGCTTGGTATGTGTTTGGGAGAATGGAAGAGAGGAACGTGTTTTCTTGGA ATGTTTTGGTTGGTGGGTATGCTAAGGGTGGGTTCTTTGATGAGGCATTGAATCTTTATCATAGAATGTTGTGGGTTGGT GTGAGGCCTGATGTTTACACTTTTCCTTGTGTTTTGAGGACTTGTGGTGGGATTCCTGACTTGGTTAGGGGTAGGGAGAT TCATGTGCATGTTCTGAGATATGGGTTTGAGTCAGAAGTGGATGTGGTTAATGCATTGATAACTATGTATGTGAAATGTG GGGATATTGATAATGCGAGGTTGGTGTTCGATAAAATGCCTGACCGAGACAGGATTTCGTGGAACGCCATGATTTCTGGG TATTTTGAGAATGGAGAGTGTTTCGAGGGACTTAGACTGTTCTGCACGATGCTTGAAATTCCAGTTGAGCCAGATTTGAT GACCTTGACTAGTGTGATTAGTGCATGCGAGCTTATCAGTGATGAGAGATTGGGGAGGGAGATTCATGGTTATGTTATGA GAACAGAGTTCTGGAGAGACCCTTCGGTTTGTAATTCGTTAGTTCAGATGTACTCATCTGTTGGACTTATTGAGGAAGGT GAAAAAGTTTTTTCTCGAACGGAAGGTAGAGATGTAGTTTCATGGACTTCAATGATATCAGGTTATGAGAATAATTCAAT GCCTCATAAAGCTCTTGAGACATATGAAATGATGGAAGAGGAAGGTATCATGCCAGATGAAATCACTATAGCCAGTGTGC TATCTGCTTGTTCTTGTTTATGCCATTTAGATATGGGGATGAAACTTCATGAAATGGCCAAGCAGACAGGGTTCATCTCT TATACAATAGTTGCAAACACACTCATTGACATGTATGCCAAGTGTAAATCCATTGACATGGCTTTAGAAGTTTTCCACTC TACTCGTGACAAGAATATAATCTCCTGGACATCTATCATCCTTGGTCTTCGGATCAATAACCGATATTTTGAAGCTTTAG TTTTCTTCAGAGATATGATGCGTAGACTAAAGCCAAACTCTGTTACTTTAGTTTGTGTCCTATCTGCATGTGCTAGAATT GGAGCTCTGGGATGTGGTAAAGAGATCCATGCCTATGCTTTGAGAACCGGAGTAAGTTTTTATGGTTTTCTGCCGAATGC AATTTTGGACTTGTATGTGAGGTGTGGAAGAATGGAATATGGCTGGAAACAATTTTTCTCAGGTGATCAAGATATTTCTG CTTGGAACATTTTGCTAACAGGATACGCTGAGCGTGGGAAAGGAGCACTTGCTGCTGAGCTTTTTCAGAGAATGGTAGAA TCAAACATTGAACCTGATGAAATCACATTCATCTCCATATTATGTGCTTGCAGCAGATCTAGTATGGTTGCAGAAGGCTT AGAATATTTTAACAGCATGAAATACGAGTACTCTATCACACCTAATCTGAAACACTACGCATGTGTAGTCGATTTACTTG GCCGTGCTGGGAAATTAGAGGATGCTTATGAATTCATACAGAAAATTCCAATGAAACCAGACCCTGCAGTTTGGGGAGCC TTGTTAAATGCGTGCCGGATCCACCGTGATGTCGAGCTAGGGGAACTTGCTGCAGAGAACATCTTTCAAGAAGATACAAC CAGCGTTGGCTATTACATTCTTCTGTCTAATCTATATGCTGATAATGGTAAATGGGACAAAGTTGCAGAAGTAAGAAAAA TGATGAGACAGAATGGGCTAATAGTAGATCCTGGATGCAGCTGGGTGGAAATTAAGGGCACAGTGCATGCTTTTCTCAGC GGTGATAACTTCCATCCTCAAATCGAGGAAATAAACGCGCTTTTGGAGCGGTTTTACGAGAAAATGAAGGTAGCTGGTAT TGAAGGGCCAGAAAGTAGTCACATGAACATAATGGAAGCTTCCAAGGCTGATATATTTTGTGGACACAGTGAGAGACAGG CCATTGCCTTTGGACTTCTTAATTCTGCTCCTGGGATGCCCATTTGGGTGACCAAGAATCTTTACATGTGCCAAAGTTGT CACAACATTGTCAAATTTATCTCGAAGGAGGTCCGCAGAGAGATTTCTGTAAGAGACGCTGAACGGTTTCACCATTTCAG GGGAGGTATCTGCTCTTGCATGGATGAAAGATACTAG
Protein sequence (LotjaGi3g1v0360300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKMLLAALETKIFKTRKHFTLLSLFLLSLLTHTVVVTISCSLTPMSAFATSSQLHAQRDHPILPTISSHFNLKTLNFQI LHPRLRSSKQFRVSSSITTTATATASINNHNPNSYICQLCLLGNLDRAMSYLDSTHELQIRVEEDAYVALIRLCEWKRAR KEGSRVYSYVSKSMAILSLQLGNALLSMFVRFGNLVDAWYVFGRMEERNVFSWNVLVGGYAKGGFFDEALNLYHRMLWVG VRPDVYTFPCVLRTCGGIPDLVRGREIHVHVLRYGFESEVDVVNALITMYVKCGDIDNARLVFDKMPDRDRISWNAMISG YFENGECFEGLRLFCTMLEIPVEPDLMTLTSVISACELISDERLGREIHGYVMRTEFWRDPSVCNSLVQMYSSVGLIEEG EKVFSRTEGRDVVSWTSMISGYENNSMPHKALETYEMMEEEGIMPDEITIASVLSACSCLCHLDMGMKLHEMAKQTGFIS YTIVANTLIDMYAKCKSIDMALEVFHSTRDKNIISWTSIILGLRINNRYFEALVFFRDMMRRLKPNSVTLVCVLSACARI GALGCGKEIHAYALRTGVSFYGFLPNAILDLYVRCGRMEYGWKQFFSGDQDISAWNILLTGYAERGKGALAAELFQRMVE SNIEPDEITFISILCACSRSSMVAEGLEYFNSMKYEYSITPNLKHYACVVDLLGRAGKLEDAYEFIQKIPMKPDPAVWGA LLNACRIHRDVELGELAAENIFQEDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEIKGTVHAFLS GDNFHPQIEEINALLERFYEKMKVAGIEGPESSHMNIMEASKADIFCGHSERQAIAFGLLNSAPGMPIWVTKNLYMCQSC HNIVKFISKEVRREISVRDAERFHHFRGGICSCMDERY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 50 | 50 | - | – | |
| Phobius | 1 | 50 | 50 | - | – | |
| TMHMM | 20 | 39 | 20 | - | – | |
| Phobius | 21 | 32 | 12 | - | – | |
| Phobius | 33 | 50 | 18 | - | – | |
| Phobius | 51 | 918 | 868 | - | – | |
| ProSiteProfiles | 108 | 142 | 35 | 5.36 | ||
| PANTHER | 110 | 256 | 147 | 1.5E-144 | – | |
| Gene3D | 111 | 260 | 150 | 1.8E-22 | ||
| ProSiteProfiles | 178 | 208 | 31 | 7.18 | ||
| TIGRFAM | 183 | 210 | 28 | 0.0012 | ||
| Pfam | 209 | 255 | 47 | 9.4E-9 | ||
| ProSiteProfiles | 209 | 243 | 35 | 12.551 | ||
| TIGRFAM | 211 | 244 | 34 | 7.6E-6 | ||
| ProSiteProfiles | 244 | 278 | 35 | 5.821 | ||
| Gene3D | 261 | 362 | 102 | 2.6E-21 | ||
| PANTHER | 264 | 357 | 94 | 1.5E-144 | – | |
| ProSiteProfiles | 279 | 309 | 31 | 8.374 | ||
| TIGRFAM | 283 | 309 | 27 | 0.0024 | ||
| Pfam | 283 | 309 | 27 | 9.5E-4 | ||
| ProSiteProfiles | 310 | 344 | 35 | 10.501 | ||
| TIGRFAM | 312 | 339 | 28 | 3.9E-4 | ||
| Pfam | 312 | 339 | 28 | 2.0E-5 | ||
| PANTHER | 364 | 472 | 109 | 1.5E-144 | – | |
| Gene3D | 366 | 462 | 97 | 3.0E-18 | ||
| ProSiteProfiles | 380 | 410 | 31 | 7.805 | ||
| Pfam | 383 | 406 | 24 | 0.14 | ||
| Pfam | 411 | 457 | 47 | 7.0E-10 | ||
| ProSiteProfiles | 411 | 445 | 35 | 11.915 | ||
| TIGRFAM | 413 | 447 | 35 | 5.0E-7 | ||
| ProSiteProfiles | 446 | 480 | 35 | 6.654 | ||
| PANTHER | 461 | 567 | 107 | 1.5E-144 | – | |
| Gene3D | 463 | 567 | 105 | 4.6E-17 | ||
| ProSiteProfiles | 481 | 515 | 35 | 7.87 | ||
| Pfam | 486 | 512 | 27 | 0.0077 | ||
| Pfam | 514 | 542 | 29 | 0.081 | ||
| ProSiteProfiles | 546 | 580 | 35 | 6.347 | ||
| PANTHER | 566 | 775 | 210 | 1.5E-144 | – | |
| Gene3D | 568 | 857 | 290 | 1.2E-32 | ||
| Pfam | 611 | 658 | 48 | 2.1E-9 | ||
| ProSiteProfiles | 611 | 645 | 35 | 11.772 | ||
| TIGRFAM | 614 | 647 | 34 | 1.6E-6 | ||
| ProSiteProfiles | 646 | 676 | 31 | 7.552 | ||
| ProSiteProfiles | 682 | 712 | 31 | 7.136 | ||
| ProSiteProfiles | 748 | 782 | 35 | 7.881 | ||
| Pfam | 755 | 780 | 26 | 0.39 | ||
| Pfam | 784 | 907 | 124 | 2.4E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0360300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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