Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0361800 |
| Transcript ID | LotjaGi3g1v0361800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/kelch-repeat protein family; TAIR: AT1G15670.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9LMR5|FK126_ARATH F-box/kelch-repeat protein At1g15670; TrEMBL-Plants: tr|A0A072UH78|A0A072UH78_MEDTR Galactose oxidase/kelch repeat protein; Found in the gene: LotjaGi3g1v0361800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74551596..74555236) extracted from Lotus japonicus Gifu genome v1.2.
AAAGCCATCAATCATCACTTTACTATTATTTTATTCTTACCTTTAAAACTTTGTACAAGAAATAATAAGTTATTGCTTGT GAAGAGAAGATAAAGCTAGAAATAAAAATGACAATTCCATAATTTAAAATTGACAAGTGAAAACAGAAAAAGAAAAATAG AAATTTATTTTACCAAAGTACCCCTACTTTGTCTCAATCAAATTAAAAACCTTCTAGAAGACTATTCCTTTCTCACTCCC CAAAGCACCATCTGAAAACACCATGTGCACCCCTCTTCTATAAAGCCCAAAACTCGGCACTCTCAACCCCACAACACCAT TTCAACAACACAAGCATCTTCACTTCACAAGCATCTCTTCCTCTTCTCAGAAACCAAACCCCTCTTCATCTCTTCTCACC CTTTCTAAAATTGCTTTGCAAAGATCCTTTCCTTCTGCTATTCCAATTCATGGGTGTTCATTAATTCATCGTTGACCTTT GTAGTAACAGTGTTTCTGCTATCATGGAGCTAATTTCTGGTCTACCGGATGATGTTGCGCGAGACTGTCTGATTCGGGTT TCATACGAGCAGTTCGCCGCAGCGGCGGCGGTCTGCAGAGGGTGGAAAACAGAGATACACTCGCCGGAGTTCCATCGTCA ACGGCGGAGCACGGGGCACGCCGAGAAAGTCATGGTGACGGTTCAAGCCCAGCCCGAACCGGAGAAGTCCGGAACCGGTT CGACAAAGCGTCTGACGAACCCGGTTTACCGGCTCAGCTTATTCAACCTGGGAACAGGTGACTGGAGCGAGTTACCGGCA CCTCCCGGTTTCGGTTCGGGATTACCGGTGATGTGTCAGGTTGCCGGTGTCGGGTACGATCTTGTGGTGATGGGCGGGTT AGACCCGGATTCATGGAAAGCATCGAATTCGGTGTTTATTTATAATTTCTTGTCGGGGAGGTGGCGCAGTGGGACCGACA TGCCCGGTGGGTCCCGCTCGTTTTTCGCATGCGCGTCGGATTCTCACCGGACGGTGTTCGTCGCCGGCGGGCACGACGAT GAGAAGAACGCGCTGAGGTCGGCGCTGGCGTACGACGTGGAAACGGACGAGTGGGTCCAGCTGCCGGACATGGCGGCGGA GCGCGACGAGTGCAAGGCGGTGTACCGCCGTGACGGGAGCTTCGTCGTCGTCGGTGGTTACCGGACGGAGGCTCAGGGAG GTTTTGAGAGGACCGCAGAGGCGTTTGATGCGGCGGAGGGGAAGTGGGGCCAGGTGGAAGAGAACTTCTTGGGTTGCGCC ACGTGTCCGAGGACGGTTGTGGACGGCGGCGATGGAGATGAGAGCGGGTACATGTGCAGTGGCGGCGGGGATTTGATGGC GAAGAGGGGGGACACGTGGCAGAAGGTGGCGAGGGTGCCGGGTGAGATATGCAACGTGGCGTATGTTGGAGCGTTGGATG GGTCAGTGTTGTTGATAGGATCGAATGGGTATGGTGGAGTTCATATGGGTTATGTGTTTGATGTGAAGAGTTGTAGTTGG AGAAAATTGGAGAGTCCAGAAGGGTTCCATGGACATGTCCAAAGTGGTTGCATCTTGGAGATTTGATTTAGGAATTTGGG GTTTTTGATATTTCCAATGGAGGGTGATATTTTGGATTCACAGATTTGGATTATCTGTGCAGGGACATGGCATAAAGTGT TTTTAACTTTTTCTTGATCCCTTTCCACCTCTTTTTTTATTATTCTGGCTGTCTGCTGAGTGCTGAGGGAGATTTTGGAT AGTAGTTTGAGCTTTTTGACCCCTCCTCAGTTTGAAAAGAAAAAACAAAAGTCATGAACAAGATATAGGTAAAAATTATA CCTTTCTATGAAAATTAACAATGAGACTAGTTCTGTTGGAAAATGATTCCCTCCCTTACACCATTAAGGACTTAGACCAC ATGTCATATTGGATGAGAAGTGAAATAAGCGGAAAATGTGATATGTGATGTGATAAAGAAAAATAAGTGATAAATGTGAT ATGTGATGCGATAAAAAAAAAAGAGGTATTGTTACTCTTTTTGTGTATCCTGGTGGCATGAAGTAAATATGTTTGTTTCT GAGTTTGGGGCCTTTTAAAAGTTTATTTGGTAAATTTTAAACTAACATTCACCATGCACTTTTAACTCCAAACTTCATTT AATAAAATCAAACATATATTACATTATTGCTATGTTTGGTTGGAGGGAGGGGAAAAGAAAGGGAAAGAAAACACGGAAAT CGATGAGTGAATTTAGACTAAGGTTTAATCCAAGTTCACTCCTCGATTTCCGTGTTTTCTTTCCATTTCTTTTCTCTTCC CTCCAACCAAACGAAGCCTATAACCAACCAACTTTTATTAAATTGTCACTTTTATATCCACCTAATTCACTTTTAAGTTC AAACTCTTTTTTTAATAAAAGAAACCAAGTATAAATCACATTATAGCCAATATATTTTGACCTAAATTATGTTTTGCAAA CCTAAATTTACTCAAACTCTGTTTTATAAGTTGAAACTCAATCACACACTAATGATAATATTATCTAGTATTATCGGTTC TTTGGTTGGAAAAGAAAAGTAAAAAAAGAAAAGAAAATGAAGTAATTTTTCAGATTGTTTGATTAGGGAGAAAGCGTAAT GAAAAACAAAAGAAAAAATATAACATATATAATTACTATTTACTCTTAAATATAAATTTCACAATTAATTTATATTTTAC TTTTTAAATATATAATAATTGTTTTAACTACGGGATGTCTAAATGACCCATGATAAAGTTTGGGATAAATAACTCATCAT CCAATCCCATTTGAGATAAATGAGTTGGAATTTCTATATTTTATTTATTAATTTATTTTCAACTCATTTATCTCCAATAT GATTGGATGATGAATTATTTAACCCAAACTTTTTCATGGGTCATTTAGACAACCCCTTTATCTACTCTCTCCATTCCTAT TTAACTGTCAAAGAAGAGAAAAAACACACATATTAAGGAGTGCAATTAATTTTGTTATTTTTCATAAAAGTATTATTTGA TTTCCTATTTCACCCTTTAAAATGTATATTATTTTTCCTCATTTATTGTTGATGCAAGGGCATTTCTTGGAAAAACATCA TTTAATGCTCTCTTTGAAACTATAAGTGGACAGATATATAGGAACAAAATTTTTTCTTCAAAGTGGACAGTTAATAAGAA ACGGAGAGAGTATAGTATTATATACTAAGAAGTAAAATTGTAATTATAATATTTAATTAAAATAACATTACTATAAGAAA ATTTGAATAAAAATTAATCAGTTATCTAAATGACTAAATCTGGTTTCAAAAAAAGCAACAAAATATGGGCATAGTTGACC TTTTTCAAAACAAACCTCTTTCATGTTTTCTTCCTAGAGTTGAGCAGAAAAAAGTTAGGATGGATCCCATTCATAATTTT CTTTCTCACCTCTTTTCATTTTTTATGTAACAATGCAAGAGAAATCTTGTGTGTTTTCTCTCTACCTGAAATCTTTCTCT TCATTTTTTGTAGTACCAAACCAAGAAATCATGTCTTCACCAAGTATGGTTCATCATGATAAAGTGAATATGAAAAGGTT CCAAAATAAGAACACATTATTCCTTCATAACCAAAGAAAGG
CDS sequence (LotjaGi3g1v0361800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTAATTTCTGGTCTACCGGATGATGTTGCGCGAGACTGTCTGATTCGGGTTTCATACGAGCAGTTCGCCGCAGC GGCGGCGGTCTGCAGAGGGTGGAAAACAGAGATACACTCGCCGGAGTTCCATCGTCAACGGCGGAGCACGGGGCACGCCG AGAAAGTCATGGTGACGGTTCAAGCCCAGCCCGAACCGGAGAAGTCCGGAACCGGTTCGACAAAGCGTCTGACGAACCCG GTTTACCGGCTCAGCTTATTCAACCTGGGAACAGGTGACTGGAGCGAGTTACCGGCACCTCCCGGTTTCGGTTCGGGATT ACCGGTGATGTGTCAGGTTGCCGGTGTCGGGTACGATCTTGTGGTGATGGGCGGGTTAGACCCGGATTCATGGAAAGCAT CGAATTCGGTGTTTATTTATAATTTCTTGTCGGGGAGGTGGCGCAGTGGGACCGACATGCCCGGTGGGTCCCGCTCGTTT TTCGCATGCGCGTCGGATTCTCACCGGACGGTGTTCGTCGCCGGCGGGCACGACGATGAGAAGAACGCGCTGAGGTCGGC GCTGGCGTACGACGTGGAAACGGACGAGTGGGTCCAGCTGCCGGACATGGCGGCGGAGCGCGACGAGTGCAAGGCGGTGT ACCGCCGTGACGGGAGCTTCGTCGTCGTCGGTGGTTACCGGACGGAGGCTCAGGGAGGTTTTGAGAGGACCGCAGAGGCG TTTGATGCGGCGGAGGGGAAGTGGGGCCAGGTGGAAGAGAACTTCTTGGGTTGCGCCACGTGTCCGAGGACGGTTGTGGA CGGCGGCGATGGAGATGAGAGCGGGTACATGTGCAGTGGCGGCGGGGATTTGATGGCGAAGAGGGGGGACACGTGGCAGA AGGTGGCGAGGGTGCCGGGTGAGATATGCAACGTGGCGTATGTTGGAGCGTTGGATGGGTCAGTGTTGTTGATAGGATCG AATGGGTATGGTGGAGTTCATATGGGTTATGTGTTTGATGTGAAGAGTTGTAGTTGGAGAAAATTGGAGAGTCCAGAAGG GTTCCATGGACATGTCCAAAGTGGTTGCATCTTGGAGATTTGA
Protein sequence (LotjaGi3g1v0361800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELISGLPDDVARDCLIRVSYEQFAAAAAVCRGWKTEIHSPEFHRQRRSTGHAEKVMVTVQAQPEPEKSGTGSTKRLTNP VYRLSLFNLGTGDWSELPAPPGFGSGLPVMCQVAGVGYDLVVMGGLDPDSWKASNSVFIYNFLSGRWRSGTDMPGGSRSF FACASDSHRTVFVAGGHDDEKNALRSALAYDVETDEWVQLPDMAAERDECKAVYRRDGSFVVVGGYRTEAQGGFERTAEA FDAAEGKWGQVEENFLGCATCPRTVVDGGDGDESGYMCSGGGDLMAKRGDTWQKVARVPGEICNVAYVGALDGSVLLIGS NGYGGVHMGYVFDVKSCSWRKLESPEGFHGHVQSGCILEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 360 | 360 | 7.7E-195 | – | |
| PANTHER | 1 | 360 | 360 | 7.7E-195 | – | |
| SUPERFAMILY | 3 | 48 | 46 | 8.37E-7 | ||
| Pfam | 4 | 46 | 43 | 5.8E-6 | ||
| Gene3D | 70 | 354 | 285 | 5.0E-31 | ||
| SUPERFAMILY | 79 | 344 | 266 | 1.07E-36 | ||
| Pfam | 110 | 156 | 47 | 1.8E-8 | – | |
| SMART | 119 | 167 | 49 | 0.069 | ||
| SMART | 170 | 217 | 48 | 3.0E-5 | ||
| Pfam | 170 | 203 | 34 | 9.6E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0361800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…