Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0365300 |
| Transcript ID | LotjaGi3g1v0365300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|A0A151R3Y3|A0A151R3Y3_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi3g1v0365300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75112936..75116813) extracted from Lotus japonicus Gifu genome v1.2.
GATTCAATCTGTATGGAGTGTGTGGAAGAGTGGAAGTTAAACACAAACAAAGTAACAATGATGCTCCGCGTCAAAACCAT TCTCCGAAACCGCTTGTTGCCGCTGAAAGTCATCATCCCCGGCTTCGCCGCCGCCGGGAACTTACAACCAGAATCGAACA AGGTGTCTGGGTTGTGGAACTTGAAAGCAAGGACTGAGAAGGATGTGGGGCGGATCAGAGAGGTGGCTGAGAAGACGAAT CAGAAAGGTTTGGTTTCTTTCAATGCAACCGCAACCATTCAGGATTTGTGCGGGAAAGGGAGGATGGAAGAGGCTGAGGA GGTGTTTGAGGAGATGAATCGAAAGGGTTTGGCCCTTGATCAGAGGACTTACACGTCTCTCATTCATATGTTCTGCCACC AGGAGGAGGTAGATAAGGCTTATAAGGTTTTGAGTGAAATGATTGATAGAGGGTTTTCGCCCTCGGTTGCTACATACAAC AAGCTTGTTCGTGCATATTGCGAAGAAGACAGGGTTCGGGAGGCTGCGGGGATTTTGAGGGTTATGGCTGATAGGGGTTT GTCTCCTGATGTTGATATTTATAACACTGTTATCACCTGGGGTGGTGACCAGGAGCTGGAGCTGGATACGGCGCTTGAAT TCAAGGCGAAGATGGTTGAAAAGGGCATCTTGCCTCATGCTGACACGTACTCATGGCTTATAGTGTCCCTGTGCTTCGAG CGAAGACTGTCCGAAGCTTTTGATCTCTTCCGAGAGATGCTGCGCGGGGGTTTGTCGACCGGTGAGCCTGCATACACTAG TTTGATGAATGCTTTTTGTCTTGAAGGTGAATTTAGTAAGGTTTTTCATTTGCATGATGCAATCAAGGGTTTTTTGCCTG ATTTTGTGACTAGGTTTTCACCGTCTCTTGTTACATACAACGCGCTTATTTATGGGCATTGTTGTATGGGGAGGTTTGAG GAGGCTCTAGGGATTTTGAGGGGCATGGCTGAGATGGGTTTGTCCCCCCGATGCTGTTAGTTATAGCACTGTTATATCCA GGTTTTGCAAAATCGGGGAGCCGGGGATGGCGTATGAATTGATGGTGGAGATGAATGAGAAGGAAATCAGGGGGGTATTG ATGAAGTCGTGTATAAATCACTTATGAAAGGCCTGTCAGATGAGATTACTTATACTAGTTTGATAAATGCTTATTGTGCT GAAGGTGAAGTGTATAAGGCTATTACATTGAAGGATGAAATGACACACAATGGTTCTTTGCGAGATGATGTTCCCTATAG TGTGTTTATTAATGGACTTGATAAGAAAGCTAGGACAAGGGAAGCTAAAGAGATCCTTCTGCGGATGTTTTATGATTTGG GAATGCATCTGCCAACTTTCACATATGATACTCTGATAGAAAACTGCAGTAATAATGAATTTAAGAGTGTGGTAGAGCTT GTCAAAGGTCTTTGGATGAGGGGTTTAGAGAATGAAGCAGCCAGTGTTTTGAACACAGTGCTTCAATGGAATCATAAGCC GGATGGAGCAGTTTATAATTTATTAATTGTTGAACATTGTAGGTGTGGTAATGTTGACAAGGCGTATACTATGTACATGG AGATGGTACATTATGGTTTTGCTTCTCATATGTTCTCTGTACTTGCTCTTATTAATGCTCTATTATATGTTAGAAGGTAC AATGAGATAAGAAAGGTGATTCAAAACGTATTGAGGAGCTGTGATCTCAATGATTCTGAACTACATAAAGCACTTGATGA AATTGACATCAGTCAAGGTTTTAAAGATGCTCTTTTGGATGTGCTAGCTGAAATAGCCATGGATGGACTGCTACTTAATG GTGGAAAGTGTTCATATGCTCCAGCAAGTGCCTAATATATTATTTGGTTTTTGCTTGTTGAACCCTGTTACTATAAGTAG GAATTGTTTTCTGTTATTTGGTTTTTTGCTTGTTGAACTTTTAAGTAGGAATTGTTTTCTGTGTTTTTTTAATCAAAATG TATTTCTTACTGTTACTGATTTACTTTCAGGTTGTTGGGAATCATGTTTAATGATTTTAGTGCTATGTGATTGATTGTTG AATATTTTGTTAAATTTACTAGTGTGTGTATGCATGGAGGATTTTGCTCGTGTTTGAGAAATAAATCAATTCAGAGGAGC TTTAGGAAATATATTTCATATGTTTCTCTCCTCACTTAATATCTCTCTTTCTCTCCAATTCCTACTTTTTCTATTGGGTT AAAAACTATAACCGTCCCTAAACTTTGAGCGAGTTTTGAAAACCGTCCCTCGCCGGAAAATTATCTGAAAACCATCCTCA GACTATTAAAAATAATTTGAACCCATCCCTCCGGCCACCATAGGTCCGGCCAACGTGCTTACGTGTGGGCTGAGATCCTA CGTGTACTTCCACGTCAATTAATGAGTACCAGGTGGAAGCTTATGTATGCCACGTCAATAAATAAATACATATAACTTTT TTTTATTTCAAATAGATTATTACTGATTAAAAAATTAATCTCACAATCTCAATCACCAACACAATCACACAATCCTTATC TTCTGCATCATCCAGATTCACCAACACCAGCCAACACGTCCACCATTCTCTGCATCATCATCTCCAATCCTTTGCAAAGG AAAAGCCCACAATCACCACCATCCTCTACATCATCACCAACACCAGCCACGAACTCCACCACCCCCTCCATAAAAAACCA TCTCCAAGTCCTCTTCTTTCATCTTCCAAAGCCAAAACCCAGAAACACAAGTTGTTTCTGATGCAGGAAGGTTCGATCTG GCCGTTTATCGGTTTATCGTCCAAAGAAGAGAAGAAGTATGTTTCGTTGCAGATCTGGGGTTGCAGAAATGGGTTTCATT GCAAATCTGACCGCTTGAACGTTAACCCATTTGAATCCTATTGGGTTTCTTTGAAGATTTGGGGCCGTTTATCCGTTTGA ACCATCCAAGATCTCATAGATAAGGAACCACTTCTGATCGGAGCCACCCGTTTCACGATCTGGGTTCTGGGTTTTGGGGG TCGGGGTTGCGGTGAGTGGGGTTGCGGGTTGGGGCTTCTTGGTTCTCTGATCGGAGCCACCCGTTTCACGATCCAGAGGA GTGTATTTTGGTTTTTTCGATTCAAATCAAAGCTGTGAACTTTCCTTTTCTTCTGGGTTTGTTCTTAGTTTTTTTCTCTT CTTCTTCTTCTTCCTGTGAAGTTAGCTTTTTTGCTTGATTATCATTGGAAAGAATTGATTATGGGCTTTGATTTAAATAT TCATGTAACCTGCTTTCATATACATAAGAAATAGAACTGAAAGTGTTTTAGAAAGAATCGATGGTCCACTCAATTTCTGG GTTGGTATGAAATATTAAATTCATGTGTTGTGTGTGTCTATGCTTTAAATTTGTGACCATAGCATGTAATTGGTTAATCG ATTCTGATGAATTTAAGGAAAAAACCATTTTGTGTTTTTAGTTTTTAATTTTTTCTTGGGTTCTTCATTTTTCTCAATTT TTTGATATTTTATCTATGAGTAACATGAAGATGATGATGAAGAACATGAACATTCAATGTTTCTGGGCTATTTGTTAATT ACTAGTTTTAGGGTTAGTGTGGTTGTTAGGGTTAATTTGGGGATTTAAGGTAAAATTAGGATATTAGGGTTAATTACTTA ATTCAGTTAATTAGAGATTTTTTATTTTTTATTTTAAAAAAATACACATAGGACTCATTAATTGACGTGGAAGTACACGT AGGATCTCAGCCCACACGTAAGCACGCTGGCCGGACCTGTGGTGGCCGGAGGGATGGGTTCAAATTATTTTTAATAGTCT GAGGATGGTTTTCAGATAATTTTCCGGCGAGGGACGGT
CDS sequence (LotjaGi3g1v0365300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTGTGTGGAAGAGTGGAAGTTAAACACAAACAAAGTAACAATGATGCTCCGCGTCAAAACCATTCTCCGAAACCG CTTGTTGCCGCTGAAAGTCATCATCCCCGGCTTCGCCGCCGCCGGGAACTTACAACCAGAATCGAACAAGGTGTCTGGGT TGTGGAACTTGAAAGCAAGGACTGAGAAGGATGTGGGGCGGATCAGAGAGGTGGCTGAGAAGACGAATCAGAAAGGTTTG GTTTCTTTCAATGCAACCGCAACCATTCAGGATTTGTGCGGGAAAGGGAGGATGGAAGAGGCTGAGGAGGTGTTTGAGGA GATGAATCGAAAGGGTTTGGCCCTTGATCAGAGGACTTACACGTCTCTCATTCATATGTTCTGCCACCAGGAGGAGGTAG ATAAGGCTTATAAGGTTTTGAGTGAAATGATTGATAGAGGGTTTTCGCCCTCGGTTGCTACATACAACAAGCTTGTTCGT GCATATTGCGAAGAAGACAGGGTTCGGGAGGCTGCGGGGATTTTGAGGGTTATGGCTGATAGGGGTTTGTCTCCTGATGT TGATATTTATAACACTGTTATCACCTGGGGTGGTGACCAGGAGCTGGAGCTGGATACGGCGCTTGAATTCAAGGCGAAGA TGGTTGAAAAGGGCATCTTGCCTCATGCTGACACGTACTCATGGCTTATAGTGTCCCTGTGCTTCGAGCGAAGACTGTCC GAAGCTTTTGATCTCTTCCGAGAGATGCTGCGCGGGGGTTTGTCGACCGGTGAGCCTGCATACACTAGTTTGATGAATGC TTTTTGTCTTGAAGGTGAATTTAGTAAGGTTTTTCATTTGCATGATGCAATCAAGGGTTTTTTGCCTGATTTTGTGACTA GGTTTTCACCGTCTCTTGTTACATACAACGCGCTTATTTATGGGCATTGTTGTATGGGGAGGTTTGAGGAGGCTCTAGGG ATTTTGAGGGGCATGGCTGAGATGGGTTTGTCCCCCCGATGCTGTTAG
Protein sequence (LotjaGi3g1v0365300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MECVEEWKLNTNKVTMMLRVKTILRNRLLPLKVIIPGFAAAGNLQPESNKVSGLWNLKARTEKDVGRIREVAEKTNQKGL VSFNATATIQDLCGKGRMEEAEEVFEEMNRKGLALDQRTYTSLIHMFCHQEEVDKAYKVLSEMIDRGFSPSVATYNKLVR AYCEEDRVREAAGILRVMADRGLSPDVDIYNTVITWGGDQELELDTALEFKAKMVEKGILPHADTYSWLIVSLCFERRLS EAFDLFREMLRGGLSTGEPAYTSLMNAFCLEGEFSKVFHLHDAIKGFLPDFVTRFSPSLVTYNALIYGHCCMGRFEEALG ILRGMAEMGLSPRCC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 51 | 197 | 147 | 3.9E-33 | ||
| PANTHER | 62 | 194 | 133 | 7.6E-55 | – | |
| PANTHER | 62 | 194 | 133 | 7.6E-55 | – | |
| ProSiteProfiles | 81 | 115 | 35 | 9.098 | ||
| Pfam | 91 | 113 | 23 | 2.1E-4 | ||
| TIGRFAM | 92 | 116 | 25 | 6.2E-4 | ||
| ProSiteProfiles | 116 | 150 | 35 | 12.715 | ||
| Pfam | 118 | 163 | 46 | 2.8E-14 | ||
| TIGRFAM | 119 | 152 | 34 | 1.9E-9 | ||
| PANTHER | 136 | 228 | 93 | 7.6E-55 | – | |
| PANTHER | 136 | 228 | 93 | 7.6E-55 | – | |
| ProSiteProfiles | 151 | 185 | 35 | 11.816 | ||
| TIGRFAM | 154 | 187 | 34 | 6.9E-7 | ||
| ProSiteProfiles | 186 | 221 | 36 | 7.98 | ||
| Gene3D | 199 | 335 | 137 | 9.6E-25 | ||
| PANTHER | 212 | 293 | 82 | 7.6E-55 | – | |
| PANTHER | 212 | 293 | 82 | 7.6E-55 | – | |
| ProSiteProfiles | 222 | 256 | 35 | 9.788 | ||
| Pfam | 225 | 269 | 45 | 6.1E-8 | ||
| ProSiteProfiles | 257 | 287 | 31 | 6.763 | ||
| Pfam | 296 | 325 | 30 | 4.2E-8 | ||
| ProSiteProfiles | 298 | 332 | 35 | 12.233 | ||
| TIGRFAM | 300 | 332 | 33 | 1.4E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0365300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…