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TIGR00604

Source: TIGRFAM

Description

rad3: DNA repair helicase (rad3)

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003678
Molecular function DNA helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix.
Subterm of

Associated Lotus transcripts 7

Transcript Name Description Predicted domains Domain count
Lj0g3v0292829.1
– ATP-dependent RNA helicase chl1 [Medicago truncatula] gi|357468391|ref|XP_003604480.1|
Domains
10
Lj0g3v0292829.2
– PREDICTED: probable ATP-dependent RNA helicase DDX11-like isoform X2 [Cicer arietinum] gi|502147607|ref|XP_004506847.1|
Domains
18
LotjaGi2g1v0132200.1
– DNA repair helicase; TAIR: AT1G03190.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|Q8W4M7|ERCC2_ARATH DNA repair helicase XPD; TrEMBL-Plants: tr|A0A072VC04|A0A072VC04_MEDTR DNA repair helicase (Rad3); Found in the gene: LotjaGi2g1v0132200
Domains
14
LotjaGi2g1v0132200.2
– DNA repair helicase; TAIR: AT1G03190.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|Q8W4M7|ERCC2_ARATH DNA repair helicase XPD; TrEMBL-Plants: tr|A0A0L9VKH8|A0A0L9VKH8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0132200
Domains
24
LotjaGi2g1v0132200.3
– DNA repair helicase; TAIR: AT1G03190.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|Q8W4M7|ERCC2_ARATH DNA repair helicase XPD; TrEMBL-Plants: tr|A0A0L9VKH8|A0A0L9VKH8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0132200
Domains
23
LotjaGi3g1v0366000.1
– Rad3-related DNA helicase family protein; TAIR: AT1G79890.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|F1R345|DDX11_DANRE ATP-dependent DNA helicase DDX11; TrEMBL-Plants: tr|I1KG67|I1KG67_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0366000
Domains
24
LotjaGi3g1v0366000.2
– Rad3-related DNA helicase family protein; TAIR: AT1G79890.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|F1R345|DDX11_DANRE ATP-dependent DNA helicase DDX11; TrEMBL-Plants: tr|A0A072TSN1|A0A072TSN1_MEDTR Rad3-related DNA helicase family protein; Found in the gene: LotjaGi3g1v0366000
Domains
16

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd18788 CDD 1 14.29