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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0366900 |
| Transcript ID | LotjaGi3g1v0366900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | rop guanine nucleotide exchange factor-like protein; TAIR: AT1G79860.1 RHO guanyl-nucleotide exchange factor 12; Swiss-Prot: sp|Q9CA89|ROGFC_ARATH Rop guanine nucleotide exchange factor 12; TrEMBL-Plants: tr|V7AQ39|V7AQ39_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0366900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75308753..75314001) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAACACCATTTGCAACTCTGGCTTCTCCCCCTGCTATTTTCCTCCTTCTCTCTCCCTTGCCAGACAAGTAACAACA AACTTGCATTTTCTTTTCTTTCATTCCTCCCCTTTCCCCTCCCTCAGGGACCTGGGAACCCCATGTTTTGTTCTTGTTTG TTCAGGCTTTGAGAAAGTTTTTTCCTTCAAATTTATAAGGAAAAATGGTTCGGGCACTGGAACAAGAGCAGGAAAGTTAC AGGTCCAAATTATTCCATTTCAGAGGGATGTTTGAGAATACGGGGAGGCATACAAAGAGCTTGAGCATTGAGAGCGCCAG CACGTTAAGTCCTTCAGACGAAGATCCAGCAACATCGAGAAGTCAAGGATCAAAACCTCTAAATGATTCTACTGAGAAGG CTCAAAGGTCAAGAGCAATCAAGGAGGAAATAGCAGCAAAAGAAGCCAAAGAGAAGCTATTGCAAGGTGAATAAACACCA ATGTTAATTACCCCCCAATCTAATTTCCCATTAAGTATGCCTGTGTCACGAAATATGTTATTTTCCCGTTTTCATACTTT TTGATTGGTAAACAAACTGAGTATAAATGTAGAGTTTTACATTTTATAGCTGTTACCAATTTTTTCATGCATAGGGGATA TTAATATACACCTGACAGAACAGAATTAGCTCATTTTCTTCAACTATAATTGAAACCATATTGATTTAGAAACTCTGAAG ATGCCCTTGCATTGAATTTGTTTATAATTTTAATATTTATGGTTGGGTTTAATTCAGAAATGGAACAGATGAAGGAGAGA TTTGCTAAATTGCTATTGGGGGAGGATATGTCTGGTGGAGGAAAGGGTGTTTCATCAGCTCTGGCACTGTCAAATGCATT CACAAACCTTGCTGGTATGTTGACTTTTTAGCTTTTACTTTCTTTATATGCTACTTGAATCATGATGGATACCCATTGTG ATGTTACTTCCATTTTCATGAGCTCTGGATAGAAGAAATGTTTCAAATAGCTCTTGTAAGTTTTTCATCGTTTTCTTGCT GAGAATGCAGCTGCTGTTTTTGGTGAACAAAAGCGCCTAGAGCCGATGCCGCCCGAGAGGAAAGCCAGATGGAGAAAGGA AATTGATTGGCTTCTATCAGTGACAGATTATGTTGTTGAGATGGTTCCTACTCAACAAAAAGCAAAAGATGGATCCAGCA TGGAGGTAACCCTCCTCACTCACCCTACTTTTCCAATGTTCCTTATTCTCCCTATGACAGTTGCTATACGATTGATCCTC ATCTTTGAATAAATAGATTATGACAACGCGACAACGAACGGATCTCCACATGAATATCCCTGCCTTAAGAAAGCTTGACA ACATGCTTATTGTAAGATCACTAACCAAAATGATCATTATTTTTCTATAGATAGGTCTCAATTGGTTGTTAGCTCTTAAA AAACTTGCTGATGATGAGCAGGATTGTCTAGATAACTTCAAAGACCAGAATGAGTTCTACTATGTATCAAAAGATGCAGA TGATGCAGATAAAGATAGTTCAAAGAGAAAAAATGATGACAAGTGGTGGTTACCTACACCTAAGGTTCCTGCAGAGGGTT TATCTGATGTGGCGAGAAGGTTTCTGCAGTATCAAAAAGATTGTATGAATCAAGTACTTAAAGCAGCGATGGCCATAAAT GCACAGACCCTATCGGAGATGGAGATCCCTGAAAGCTATATTGAATCCCTACCCAAGGTAAGTAAAACAGAACTAGTATC TGCATAGAAGTTTTCTTGATTAACAATTTCATATCTTTTCACATTATATAAATTTTGGTCTTTTTACTTCTTTTACAGAA TGGAAGAGCCAGTCTAGGGGACTCGATCTACCGTAGCATTACAGATGACGTTTTTGATCCTGATCAGTTCCTAGCTACTA TGGACATGACATCAGAACATAAAATCCTAGATCTCAAGAACAGAATCGAGGCGTCAATAGTGATTTGGAAGCGGAAGATG AACCAAAAAGATACCAAGTCAGCTTGGGGTTCTGCTGTGAGCTTGGAAAAAAGAGAACTCTTTGAAGAGAGAGCAGAAAC CATCTTAATTCTTTTGAAGCACCGTTTTCCTGGGCTTCCCCAATCTTCATTGGATATAAGCAAAATCCAATTCAACCGGG TAAGAGCATCCCCTGCTAGTAGTTTGATTCTGCATGCTTCTCAGTTTCAATGTTGCATTAATTTTTTCCATGGATGATTG ATATAAATATAATACAAAACCATTCATATGCTTTCACCTAACCGCTTAAGCTTTCAAGTTAGTTGGTTCATCACATGTTA TCAGAGCCTTTATAACCAAGTATTCTAGAGCTTGATCCTGGCGTGTTGCCATATCTATTATAAGTTCTAGTCATAACAAT AGACAAATATTAGTGTTTTGTTTCACTACCATATGTGCTTAAGGATCACTTATGATGGCAGGATGTGGGGCAAGCTGTTC TTGAAAGCTATTCAAGAATATTGGAAAGTTTGGCTTTTACAGTGCTGTCAAGAATAGAAGATGTACTCCATGCAGATCAC CTCACTCAAAACCCATCACTAGCTGGAAGAAGGAGCAGTGTGAGAAACCAAGTTCCCAAGCCAGAGAAGTGTCCAACTCC TAGAGAAGAGGTGGACAAGGGTGGAGCAGAAACACCCGGGTCAATGACACTATCTGATTTCATGGGTTGGCATGGTGATC AAGGTGACTCAGACATTAAGAAGGACCCTCTTGCTGCAACAGATGACTTCTACAAAGACATTGATAGTGGAAAGCCTCAA AAACTCCCAAATGTAGTGACAGACAAGAAGGTTTCTTATCTTGAGACCTTGGGAGGTATGAGAAGTCCCACATCGCGTCA TTAACCCAGAAAAGTTAAGAGTTAAGAGTTGTAAGAGGGAGAGATTTAAAAAAGGCAAGAAAACAAGAATGGTTGGTCTT GGAGAGGAGTTGTTTGAGACCTTATTTATTCTTGATCATCTATTCTTTCTTTTTGTACATAAAAATGAATATAACAATCA TCAGGGTTTGAGGTATTTTTCACAAGTTGTGTATGGTGGCACCTACAAAATGTGAATTTTTTTATGAACTCACACCGCCA TTGTACCTTAAAAAGGCTTGTAACTCTAATCAGCCTATGATGGCAGGAGGATTAGGCCTGATAGAAAGAACCATTCCTAA CTCTCATTTGCATAAACACTGTCCAATTCTATTGACAATCATCCTCTCTCATCAATATTATGTGTATCCAAATTTGTTCT CATAATTAAGTTACTGTAGTTAACTCTGAAGTTACTTGTATATACATGAATTTGATCTTCTTAATATGTGTCTGTTTTTT TATTTGCATTAATACAATGTGATTCCACAAATGCCAAGACATAAAAAGAAACATGAATTAACATCATAGCAGTGCCACTC AATTAGATTGGAAATTGGAAATTAACATCTTTGAATAGCTGTACGCATACTTACACATTATGCAAGAGAAAAAAAGAAAA AAGAACTCAATAGATGAAGTTCTGAAGTGATAGTAATTAGATCTTGCCACGAGGACCGAGCTTTGGTGGAAGTTGAGGGC CCTTCTTGATTGGTAGAATGTCACCAGAAGCTGTGGCACTGTAGTATGCGAGGGTGGAACCACCTCCCAAGATCAGAAAC TTGAGCAACAATCCCCTCTTTGTGAATGGAGCAGCAAATGTCTCAAAGAACTTGCTCTGCAAATCCATATGGATCAAAGA GCTATATAATTAGTTTAGGTATTTAAGGCAAACTCAAAGGACAAAGTTGTTTTGGAAAAAGAAAAAACTTTTTGGGGCCA ACCATGTGTTTTCAAGCTCATTTCTATTACAGCATTGACACCGTCCCTATTCAGTTGTGGTGATAGAGTCTCAGGAGAAT CCTAATCCTAGAATGGGAGCTTTAGGCCAATTTGAAAGAACTTAATCGAGCTAATCTTATAACATATATGCTTGCTTATG CAAGTGTCGAGTGAGCGTATGCAAATAACTCACGACCTACCTAAAAACTATTTTGAGCTTATTTTCATTAGCAACTCAAA TTAGCTTATGAATAAGCGCTTACACTTATTTATAACCAATTTTTTGAGTTTATTTCAATAAGCTTATCAAATTAGCTCAT GAGTAAGCATTTATGCTAGAATTTGTTGTCAAGAAATTCCTAAATTCACAAGGTCAAGGAATCTAAGTTGTTCAACAAAA ATCAGAGGACTAAAACTTTAAGCTTATCTCTGCATCCAATCTTGATGAAACGTAAGAGCCGACCAATCTTAAAGGAGCCG GGAAGTAGAGTTATGACCCATACAGAAATGTTTCTTCATAGATTTCAAATCATTGAGTCATGGACTGCCTACAATCCAGA ATTAACATTTGCCTTACAGAAACCATTCTGCCTATGGCCTTCCCAAAAACATTTCAATCTTCCTACTTTATTCCTTTTAT TCTCTTCACTATTTTCTATGTTCATGTTATACATAAGTTGCATTTTCATGTGTAAGGTTTAGCCTCTAGTTGTGACAGTT CTAATGCAAGTAGCAAAGTTCATGTAAAAGATATGTATGAAAATTGAAGAGCAAATAGCCAATCCCCAAATATTACTACT ACTACTACTCTTATCAAACCTGAAGAGAGTTGTAAGGTGAAGGTGCATCTGAACCATACAAGTCCCACTGTCCTGTAGTG TTACCAATATCCTCCAAATCAAAGTACACACTCTTGTCACCATACTTTGCTACCACAGCACCATTCCTGCAATGTTTGCT TAAACAAGTTGAGCATACAATTAAAACATACACAAAAAATAAACTAAGGATTTGATATTCCTATAGTCAAGTTGCACAAT ATGAGTAAATGCATGTGGAACCTGAAGTTCTTGGATTTGATGCTCTGGCGAGAGGACTTGAAGGAGAGCTTAGTTCCATT AAGGGAACTTCCAGCAAGACCATTGATTGCAGCTGGTTGAACAGCAGCTAAGGTAGCAAGAGAAGCCATGGTGATGGTGT TACCTTCAAACTTTCTTCTCTCTTTGTATCAATAAGTGATGATTCAGTTTCTGGTTGTTGCCAATGGGGATGTTTTGGTT TTGATATGTTACTTGGAGATCATGTTGCCATGTGGCCAGGTACGTTTACTTGAGAAGATTTGATGACTCATTTACGAGGT GACATGTGGCTTGAAGATAGATAAGCCTATCCTCTCCAAAACTCTTAGC
CDS sequence (LotjaGi3g1v0366900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCGGGCACTGGAACAAGAGCAGGAAAGTTACAGGTCCAAATTATTCCATTTCAGAGGGATGTTTGAGAATACGGG GAGGCATACAAAGAGCTTGAGCATTGAGAGCGCCAGCACGTTAAGTCCTTCAGACGAAGATCCAGCAACATCGAGAAGTC AAGGATCAAAACCTCTAAATGATTCTACTGAGAAGGCTCAAAGGTCAAGAGCAATCAAGGAGGAAATAGCAGCAAAAGAA GCCAAAGAGAAGCTATTGCAAGAAATGGAACAGATGAAGGAGAGATTTGCTAAATTGCTATTGGGGGAGGATATGTCTGG TGGAGGAAAGGGTGTTTCATCAGCTCTGGCACTGTCAAATGCATTCACAAACCTTGCTGCTGCTGTTTTTGGTGAACAAA AGCGCCTAGAGCCGATGCCGCCCGAGAGGAAAGCCAGATGGAGAAAGGAAATTGATTGGCTTCTATCAGTGACAGATTAT GTTGTTGAGATGGTTCCTACTCAACAAAAAGCAAAAGATGGATCCAGCATGGAGATTATGACAACGCGACAACGAACGGA TCTCCACATGAATATCCCTGCCTTAAGAAAGCTTGACAACATGCTTATTGATTGTCTAGATAACTTCAAAGACCAGAATG AGTTCTACTATGTATCAAAAGATGCAGATGATGCAGATAAAGATAGTTCAAAGAGAAAAAATGATGACAAGTGGTGGTTA CCTACACCTAAGGTTCCTGCAGAGGGTTTATCTGATGTGGCGAGAAGGTTTCTGCAGTATCAAAAAGATTGTATGAATCA AGTACTTAAAGCAGCGATGGCCATAAATGCACAGACCCTATCGGAGATGGAGATCCCTGAAAGCTATATTGAATCCCTAC CCAAGAATGGAAGAGCCAGTCTAGGGGACTCGATCTACCGTAGCATTACAGATGACGTTTTTGATCCTGATCAGTTCCTA GCTACTATGGACATGACATCAGAACATAAAATCCTAGATCTCAAGAACAGAATCGAGGCGTCAATAGTGATTTGGAAGCG GAAGATGAACCAAAAAGATACCAAGTCAGCTTGGGGTTCTGCTGTGAGCTTGGAAAAAAGAGAACTCTTTGAAGAGAGAG CAGAAACCATCTTAATTCTTTTGAAGCACCGTTTTCCTGGGCTTCCCCAATCTTCATTGGATATAAGCAAAATCCAATTC AACCGGGATGTGGGGCAAGCTGTTCTTGAAAGCTATTCAAGAATATTGGAAAGTTTGGCTTTTACAGTGCTGTCAAGAAT AGAAGATGTACTCCATGCAGATCACCTCACTCAAAACCCATCACTAGCTGGAAGAAGGAGCAGTGTGAGAAACCAAGTTC CCAAGCCAGAGAAGTGTCCAACTCCTAGAGAAGAGGTGGACAAGGGTGGAGCAGAAACACCCGGGTCAATGACACTATCT GATTTCATGGGTTGGCATGGTGATCAAGGTGACTCAGACATTAAGAAGGACCCTCTTGCTGCAACAGATGACTTCTACAA AGACATTGATAGTGGAAAGCCTCAAAAACTCCCAAATGTAGTGACAGACAAGAAGGTTTCTTATCTTGAGACCTTGGGAG GTATGAGAAGTCCCACATCGCGTCATTAA
Protein sequence (LotjaGi3g1v0366900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRALEQEQESYRSKLFHFRGMFENTGRHTKSLSIESASTLSPSDEDPATSRSQGSKPLNDSTEKAQRSRAIKEEIAAKE AKEKLLQEMEQMKERFAKLLLGEDMSGGGKGVSSALALSNAFTNLAAAVFGEQKRLEPMPPERKARWRKEIDWLLSVTDY VVEMVPTQQKAKDGSSMEIMTTRQRTDLHMNIPALRKLDNMLIDCLDNFKDQNEFYYVSKDADDADKDSSKRKNDDKWWL PTPKVPAEGLSDVARRFLQYQKDCMNQVLKAAMAINAQTLSEMEIPESYIESLPKNGRASLGDSIYRSITDDVFDPDQFL ATMDMTSEHKILDLKNRIEASIVIWKRKMNQKDTKSAWGSAVSLEKRELFEERAETILILLKHRFPGLPQSSLDISKIQF NRDVGQAVLESYSRILESLAFTVLSRIEDVLHADHLTQNPSLAGRRSSVRNQVPKPEKCPTPREEVDKGGAETPGSMTLS DFMGWHGDQGDSDIKKDPLAATDDFYKDIDSGKPQKLPNVVTDKKVSYLETLGGMRSPTSRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 30 | 71 | 42 | - | – | |
| MobiDBLite | 30 | 62 | 33 | - | – | |
| Coils | 72 | 102 | 31 | - | – | |
| Gene3D | 79 | 231 | 153 | 2.3E-70 | – | |
| ProSiteProfiles | 79 | 444 | 366 | 114.652 | ||
| PANTHER | 86 | 542 | 457 | 7.5E-280 | – | |
| PANTHER | 86 | 542 | 457 | 7.5E-280 | ||
| Pfam | 87 | 438 | 352 | 2.0E-175 | ||
| Gene3D | 255 | 434 | 180 | 1.4E-108 | – | |
| Gene3D | 284 | 400 | 117 | 1.4E-108 | – | |
| MobiDBLite | 441 | 475 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho guanyl-nucleotide exchange factor activity | Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. |
Expression pattern of LotjaGi3g1v0366900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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