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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0371100 |
Transcript ID | LotjaGi3g1v0371100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Histidine phosphotransfer protein; TAIR: AT3G16360.2 HPT phosphotransmitter 4; Swiss-Prot: sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4; TrEMBL-Plants: tr|A0A0S3SZT5|A0A0S3SZT5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0371100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76121380..76123285) extracted from Lotus japonicus Gifu genome v1.2.
ATAACTTCCCCTGTTCACTTCTCTCTGTTTTCCTCACATCACATTATTTCTTCTTCTAAGTTCTAACTATGGACAGAAAC CACTCCCACAGGCACCTTGCTGCCATGAAACAATCTCTCTTTGATCAGGTTCTTCCCTCTTCCTTACATTTTTTCATTCA CTTTGCTATGCATCATGATCTCAATTCTCAAGTACATTTACATAAATGTAATGTTCTGTTGGCTCCATTTCAGTTCAATG ATGACTCTTGATACTTTTTTCTACAGGGATTGCTGGATGAACAATTTATTCAACTGGAAGAACTGCAGGATGATGCTAAT CCTAACTTTGTTGAGGAAATTGTGACTCTTTACTACCGCGATTCATCGCGCCTTATCTCAAACATAGATCAGGCACTGTG AGTTAATTCATTTCACTATTCTCTGTTTTTTCTTGATTTTGTACTTTTTTTTTTAAATTAATACATAAATTTGGTTCATT TTGGTGCTTGTAGCAAAGAGAGGAACTCAATGGATTTCAACAAGCTGGACACACTTATGCATCAGTTCAAAGGAAGCAGC TCAAGGTAAATATAAAATTGTCCAATACAAAATATTAAAAGTATCCCAGGTACATTTTTGTTGGTTTGATCACACAACAG ATAATCCTAATTATTTGAACTCATTGTTTTGTTTCTTTTCCTTTTATAATGGGTTGCAGCATCGGAGCCAAAAAGGTGAA AGCAGAGTGCAATCTATTTAGAGAATACTGCATGGCAGGAAATGCAGAAGGGTAAGCAATCTCTTAAAGAAGTTTCATAA TTCATGTAATCCCATATTCTCATGATAATGATCATATATATCTAGCTTTTCTCAAGGGCCCAAGCTTTTGCATTATATTG TTTTATCATGCATGATATTAAATTGCAGTCCGCAATCACAATGGCAATCGCAATCCCAATAACAATACCAAGGTTTTTCG GCTCATCGCAATTGTTCCGCGATTGGAATTGCAGCCCTATCAAATGATTTTTTCCGCAACTTTACATAAAATCACGAATC ACTACTTTGTGTATGTTGAAAATTCTAATTGATTCTACAACTAAAATCAATTTTAGTGAGAAGTATTCTTGTGAAAATGT CCAAATTAAACAAGCTATTAAGTATTAACGACAATTGTAACTTTTAAAACCTTAATCGCGATGAAGAACTAATATTTCAT TGAAGAGCTTGGTCAAGCCATAGTACTGAAGGCTAAATGCATTTTGTTTTCTTTTTAAATATGAAAAATAAATAAATTGA TATTTTAAGTCTTCCAATTTGAAAAAAATTCCTAAACATTTATGATTTATAGCACTGTTCTTTTGTGAATAAGCAGATGC ATAAGGAGCTTCCAACAACTAAAGAAAGAGTATGCTGCACTGAAAAAGAAACTTGAAGCTTATTTTCAGGTGACTACAGA AACATTTGAGTTCATATGTAATGAAAATTTGTACTTTGGCAATGTGTTGTTGAACTGTAATGCTCATTTTGTTCATTAAT GTAGTTTGCTAGGCAATCTGGGCCCTCTGAGACAGCGTGTCGCCCCAAATGAAGACCTAGTAAAACTATGCATATCATAA GGACAAATGTATATGGTGAATCAAGTAACATGAAAGAGTATATGTTCATCACCGCAAGAAGAAAGTGATGTTGTCCCGTT TGAGATATTTTGCTTTCAAATATCATTTTTGTTTTCATGGTAGTAGGAATCCTGCTGTTGTACTTTTATGCCTATTACTA TAATATGCATATCTCTGATTTGACTACTTTAAAAATGTTACTCCCTCCGGTCCTATTTATAAGCAACAAAAAAAAAATTC ACATAGTTTAAGAAATGTAGTTAAACTAGATAAAATGCATTAAATTTGTCTTGAATTAAAATAAAC
CDS sequence (LotjaGi3g1v0371100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAGAAACCACTCCCACAGGCACCTTGCTGCCATGAAACAATCTCTCTTTGATCAGGGATTGCTGGATGAACAATT TATTCAACTGGAAGAACTGCAGGATGATGCTAATCCTAACTTTGTTGAGGAAATTGTGACTCTTTACTACCGCGATTCAT CGCGCCTTATCTCAAACATAGATCAGGCACTCAAAGAGAGGAACTCAATGGATTTCAACAAGCTGGACACACTTATGCAT CAGTTCAAAGGAAGCAGCTCAAGCATCGGAGCCAAAAAGGTGAAAGCAGAGTGCAATCTATTTAGAGAATACTGCATGGC AGGAAATGCAGAAGGATGCATAAGGAGCTTCCAACAACTAAAGAAAGAGTATGCTGCACTGAAAAAGAAACTTGAAGCTT ATTTTCAGTTTGCTAGGCAATCTGGGCCCTCTGAGACAGCGTGTCGCCCCAAATGA
Protein sequence (LotjaGi3g1v0371100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRNHSHRHLAAMKQSLFDQGLLDEQFIQLEELQDDANPNFVEEIVTLYYRDSSRLISNIDQALKERNSMDFNKLDTLMH QFKGSSSSIGAKKVKAECNLFREYCMAGNAEGCIRSFQQLKKEYAALKKKLEAYFQFARQSGPSETACRPK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 150 | 150 | 3.9E-80 | – | |
PANTHER | 1 | 150 | 150 | 3.9E-80 | – | |
Gene3D | 3 | 144 | 142 | 2.8E-47 | ||
SUPERFAMILY | 6 | 140 | 135 | 3.66E-33 | ||
ProSiteProfiles | 38 | 134 | 97 | 12.711 | ||
CDD | 42 | 132 | 91 | 5.82253E-7 | ||
Pfam | 44 | 128 | 85 | 5.1E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Phosphorelay signal transduction system | A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. |
Expression pattern of LotjaGi3g1v0371100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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