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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR008207
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 24 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.088s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0065719.1
n.a. PREDICTED: histidine-containing phosphotransfer protein 4-like [Glycine max] gi|356526081|ref|XP_003531648.1| chr0 22904772 22906440 +
5 domain predictions
1 GO term
Lj0g3v0166149.1
n.a. PREDICTED: histidine-containing phosphotransfer protein 5-like [Glycine max] gi|356500234|ref|XP_003518938.1| chr0 79011737 79012460 -
2 domain predictions
1 GO term
Lj1g3v1720090.2
n.a. PREDICTED: histidine-containing phosphotransfer protein 1-like [Cicer arietinum] gi|502118012|ref|XP_004496057.1| chr1 20213626 20219012 +
3 domain predictions
1 GO term
Lj1g3v1720090.3
n.a. PREDICTED: histidine-containing phosphotransfer protein 1-like [Cicer arietinum] gi|502118012|ref|XP_004496057.1| chr1 20215409 20219012 +
3 domain predictions
1 GO term
Lj2g3v0855250.1
n.a. Histidine phosphotransfer protein [Theobroma cacao] gi|508783409|gb|EOY30665.1| chr2 13170209 13174917 -
3 domain predictions
1 GO term
Lj3g3v0054470.1
n.a. PREDICTED: histidine-containing phosphotransfer protein 6-like [Cicer arietinum] gi|502147874|ref|XP_004506949.1| chr3 615957 616946 +
4 domain predictions
1 GO term
Lj3g3v0288910.1
n.a. Histidine phosphotransfer protein [Medicago truncatula] gi|357454793|ref|XP_003597677.1| chr3 1780962 1782577 +
5 domain predictions
1 GO term
Lj3g3v1145890.2
n.a. PREDICTED: histidine-containing phosphotransfer protein 1-like [Vitis vinifera] gi|225436283|ref|XP_002265254.1| chr3 15495683 15506874 +
2 domain predictions
1 GO term
Lj3g3v2187050.1
n.a. PREDICTED: histidine-containing phosphotransfer protein 6-like [Cicer arietinum] gi|502147874|ref|XP_004506949.1| chr3 27159403 27160936 +
3 domain predictions
1 GO term
Lj5g3v1440060.1
n.a. PREDICTED: histidine-containing phosphotransfer protein 1-like [Glycine max] gi|356576753|ref|XP_003556494.1| chr5 21370379 21371703 -
5 domain predictions
1 GO term
Lj5g3v1440060.2
n.a. PREDICTED: histidine-containing phosphotransfer protein 1-like [Glycine max] gi|356576753|ref|XP_003556494.1| chr5 21370379 21371703 -
5 domain predictions
1 GO term
Lj5g3v1692590.1
n.a. PREDICTED: histidine-containing phosphotransfer protein 1-like [Cicer arietinum] gi|502118012|ref|XP_004496057.1| chr5 23972098 23976212 -
5 domain predictions
1 GO term
Lj5g3v2266270.1
n.a. PREDICTED: histidine-containing phosphotransfer protein 6-like [Cicer arietinum] gi|502147874|ref|XP_004506949.1| chr5 33120984 33122422 -
5 domain predictions
1 GO term
Lj6g3v1915980.2
n.a. PREDICTED: histidine-containing phosphotransfer protein 1-like isoform X1 [Cicer arietinum] gi|502078870|ref|XP_004486082.1| chr6 21591870 21593745 +
5 domain predictions
1 GO term
LotjaGi1g1v0776200.1
n.a. Histidine phosphotransfer protein; TAIR: AT3G21510.1 histidine-containing phosphotransmitter 1; Swiss-Prot: sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1; TrEMBL-Plants: tr|K7KGR6|K7KGR6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0776200 LjG1.1_chr1 134850241 134852040 +
4 domain predictions
1 GO term
LotjaGi3g1v0008600.1
n.a. Histidine phosphotransfer protein; TAIR: AT1G80100.1 histidine phosphotransfer protein 6; Swiss-Prot: sp|Q9SSC9|AHP6_ARATH Pseudo histidine-containing phosphotransfer protein 6; TrEMBL-Plants: tr|G7II71|G7II71_MEDTR Histidine phosphotransfer protein; Found in the gene: LotjaGi3g1v0008600 LjG1.1_chr3 979448 980776 +
3 domain predictions
1 GO term
LotjaGi3g1v0021400.1
n.a. Histidine phosphotransfer protein; TAIR: AT3G16360.2 HPT phosphotransmitter 4; Swiss-Prot: sp|Q6F303|PHP5_ORYSJ Pseudo histidine-containing phosphotransfer protein 5; TrEMBL-Plants: tr|G7IHZ9|G7IHZ9_MEDTR Histidine phosphotransfer protein; Found in the gene: LotjaGi3g1v0021400 LjG1.1_chr3 2237412 2239735 +
3 domain predictions
1 GO term
LotjaGi3g1v0355900.1
n.a. Histidine phosphotransfer protein; TAIR: AT1G80100.1 histidine phosphotransfer protein 6; Swiss-Prot: sp|Q9SSC9|AHP6_ARATH Pseudo histidine-containing phosphotransfer protein 6; TrEMBL-Plants: tr|A0A0B2S001|A0A0B2S001_GLYSO Histidine-containing phosphotransfer protein 6; Found in the gene: LotjaGi3g1v0355900 LjG1.1_chr3 73773772 73775472 +
3 domain predictions
1 GO term
LotjaGi3g1v0371100.1
n.a. Histidine phosphotransfer protein; TAIR: AT3G16360.2 HPT phosphotransmitter 4; Swiss-Prot: sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4; TrEMBL-Plants: tr|A0A0S3SZT5|A0A0S3SZT5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0371100 LjG1.1_chr3 76121380 76123285 +
4 domain predictions
1 GO term
LotjaGi5g1v0217900.1
n.a. Histidine-containing phosphotransfer protein, putative; TAIR: AT3G21510.1 histidine-containing phosphotransmitter 1; Swiss-Prot: sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1; TrEMBL-Plants: tr|I3S0F2|I3S0F2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0217900 LjG1.1_chr5 52390096 52392201 -
4 domain predictions
1 GO term
LotjaGi5g1v0260400.1
n.a. Histidine phosphotransfer protein; TAIR: AT1G03430.1 histidine-containing phosphotransfer factor 5; Swiss-Prot: sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5; TrEMBL-Plants: tr|I3SUF5|I3SUF5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0260400 LjG1.1_chr5 56889896 56894387 +
4 domain predictions
1 GO term
LotjaGi6g1v0303900.1
n.a. Histidine phosphotransfer protein; TAIR: AT3G21510.1 histidine-containing phosphotransmitter 1; Swiss-Prot: sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1; TrEMBL-Plants: tr|I3SSQ4|I3SSQ4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0303900 LjG1.1_chr6 62133612 62142095 +
4 domain predictions
1 GO term
LotjaGi6g1v0303900.2
n.a. Histidine phosphotransfer protein; TAIR: AT3G21510.1 histidine-containing phosphotransmitter 1; Swiss-Prot: sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1; TrEMBL-Plants: tr|I3SSQ4|I3SSQ4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0303900 LjG1.1_chr6 62134029 62136202 +
4 domain predictions
1 GO term
LotjaGi6g1v0303900.3
n.a. Histidine phosphotransfer protein; TAIR: AT3G21510.1 histidine-containing phosphotransmitter 1; Swiss-Prot: sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1; TrEMBL-Plants: tr|I3SSQ4|I3SSQ4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0303900 LjG1.1_chr6 62134622 62135970 +
4 domain predictions
1 GO term