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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • cd00088
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 12 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.018s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0065719.1
n.a. PREDICTED: histidine-containing phosphotransfer protein 4-like [Glycine max] gi|356526081|ref|XP_003531648.1| chr0 22904772 22906440 +
1 domain prediction
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Lj5g3v1440060.1
n.a. PREDICTED: histidine-containing phosphotransfer protein 1-like [Glycine max] gi|356576753|ref|XP_003556494.1| chr5 21370379 21371703 -
1 domain prediction
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Lj5g3v1440060.2
n.a. PREDICTED: histidine-containing phosphotransfer protein 1-like [Glycine max] gi|356576753|ref|XP_003556494.1| chr5 21370379 21371703 -
1 domain prediction
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Lj5g3v1692590.1
n.a. PREDICTED: histidine-containing phosphotransfer protein 1-like [Cicer arietinum] gi|502118012|ref|XP_004496057.1| chr5 23972098 23976212 -
1 domain prediction
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Lj6g3v1915980.2
n.a. PREDICTED: histidine-containing phosphotransfer protein 1-like isoform X1 [Cicer arietinum] gi|502078870|ref|XP_004486082.1| chr6 21591870 21593745 +
1 domain prediction
 –
LotjaGi1g1v0776200.1
n.a. Histidine phosphotransfer protein; TAIR: AT3G21510.1 histidine-containing phosphotransmitter 1; Swiss-Prot: sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1; TrEMBL-Plants: tr|K7KGR6|K7KGR6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0776200 LjG1.1_chr1 134850241 134852040 +
2 domain predictions
1 GO term
LotjaGi3g1v0371100.1
n.a. Histidine phosphotransfer protein; TAIR: AT3G16360.2 HPT phosphotransmitter 4; Swiss-Prot: sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4; TrEMBL-Plants: tr|A0A0S3SZT5|A0A0S3SZT5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0371100 LjG1.1_chr3 76121380 76123285 +
2 domain predictions
1 GO term
LotjaGi5g1v0217900.1
n.a. Histidine-containing phosphotransfer protein, putative; TAIR: AT3G21510.1 histidine-containing phosphotransmitter 1; Swiss-Prot: sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1; TrEMBL-Plants: tr|I3S0F2|I3S0F2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0217900 LjG1.1_chr5 52390096 52392201 -
2 domain predictions
1 GO term
LotjaGi5g1v0260400.1
n.a. Histidine phosphotransfer protein; TAIR: AT1G03430.1 histidine-containing phosphotransfer factor 5; Swiss-Prot: sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5; TrEMBL-Plants: tr|I3SUF5|I3SUF5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0260400 LjG1.1_chr5 56889896 56894387 +
2 domain predictions
1 GO term
LotjaGi6g1v0303900.1
n.a. Histidine phosphotransfer protein; TAIR: AT3G21510.1 histidine-containing phosphotransmitter 1; Swiss-Prot: sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1; TrEMBL-Plants: tr|I3SSQ4|I3SSQ4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0303900 LjG1.1_chr6 62133612 62142095 +
2 domain predictions
1 GO term
LotjaGi6g1v0303900.2
n.a. Histidine phosphotransfer protein; TAIR: AT3G21510.1 histidine-containing phosphotransmitter 1; Swiss-Prot: sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1; TrEMBL-Plants: tr|I3SSQ4|I3SSQ4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0303900 LjG1.1_chr6 62134029 62136202 +
2 domain predictions
1 GO term
LotjaGi6g1v0303900.3
n.a. Histidine phosphotransfer protein; TAIR: AT3G21510.1 histidine-containing phosphotransmitter 1; Swiss-Prot: sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1; TrEMBL-Plants: tr|I3SSQ4|I3SSQ4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0303900 LjG1.1_chr6 62134622 62135970 +
2 domain predictions
1 GO term